ViewGene

Locus Name:
GeneID:
Location:

GeneID:1714
TrivialName: PA14_44160
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_44160
PAO1 Ortholog Locus:PA1572
Sequence Length:1146
Protein Length:381
Start: 3930598
Stop: 3929453
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04961.1|AE004585_9 (AE004585) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 374/381 (98%), Positives = 379/381 (99%)
Sequence:
ATGGACATGTTTCGCCTGGGATTGGTGGTCAATCCCCTGGCCGGGCTGGGTGGCCCGGTCGCCTTGAAGGGC
AGCGACGGGGTGGCTGCCGAGGCCCTGGCCAGAGGCGCCGAACCACGTGCGCTGGAGCGCACCCGGATAGCC
CTGGAGTGCCTGTTGCCGCTGGTCGAGAAGATCGAGTTCCTGACCTTTCCCGGGGCCATGGGCGGCGAGTTG
CTCGAGCGCATGGGCTTCCGCCATCGCCTGCTCGGCGAGTGGCAGGGAGCGGTCAGCAGCGCGGCGGATACC
CGGTTGGCGGTCGAGCGTTTGCAGGAGGCCGGCGTCGCCCTGATCCTGTTCGCCGGTGGTGATGGCACAGCA
CGGGATGTTGCCGGGGTGGTGCGCGAGCAACAGCCGGTGCTCGGCATTCCGGCCGGGGTGAAGATCCACTCC
GGGGTCTATGCCATCAGTCCGCGCGCGGCCGGCGAATTGGCCAGGCGCCTGGTCGAGGGCGGCCTGGTGCGC
CTGGCCAGCGGCGAGGTGCGCGATCTCGACGAAGAGGCGCTGCGCGCCGGCCGCGTCGCCGCGCGTTGGTAC
GGCGAGATGACGGTGCCGGAGGAGGGCCACTTCATGCAGCACGTGAAGCAGGCAGGGATGGAGTCCGAGGAG
CTGGTGCTGGTGGACCTCGCCGATTGGCTGGCGGAAAGCTGGGAAGACGGCGTGCGTTATGTGCTCGGACCG
GGCTCGACCCTGCATGGCCTGGCGCGCAACCTCGGCCTGGAAACCACCCTGCTGGGCGTCGACGTGCTGGAG
AATGGCGCGGTGCTCGCCCGCGACGTCGACGAGGCGCGGCTGTTCGAACTGGTGGACGGTCATCCGGCGTTC
CTGCTGGTCACCGCCATCGGCGGCCAGGGCCACGTGATCGGTCGCGGCAACCAGCAGATCAGTCCCCGGGTG
TTGCGCGCCATCGGCCTGGAGCGCATGCGGGTGGTCGCCACCAAGCGCAAGCTGGGGACCCTCGGGGGCCGC
CCGTTGCTGGTCGACAGCGGCGACCCGGTGCTGGACGACAGCTTCCCGGACGCCATCCGGGTCTGGGCCGGC
TACAAGGAAGAACTGCTGTATCCGCTGGGATACGCGAAGGACCAGGACACGCCCGCGGGCGCTTAG
Translation:
MDMFRLGLVVNPLAGLGGPVALKGSDGVAAEALARGAEPRALERTRIALECLLPLVEKIEFLTFPGAMGGEL
LERMGFRHRLLGEWQGAVSSAADTRLAVERLQEAGVALILFAGGDGTARDVAGVVREQQPVLGIPAGVKIHS
GVYAISPRAAGELARRLVEGGLVRLASGEVRDLDEEALRAGRVAARWYGEMTVPEEGHFMQHVKQAGMESEE
LVLVDLADWLAESWEDGVRYVLGPGSTLHGLARNLGLETTLLGVDVLENGAVLARDVDEARLFELVDGHPAF
LLVTAIGGQGHVIGRGNQQISPRVLRAIGLERMRVVATKRKLGTLGGRPLLVDSGDPVLDDSFPDAIRVWAG
YKEELLYPLGYAKDQDTPAGA*
AnnotationID:1723GeneID:1714
AnnotatorUID: diggins
Modification Date/Time: 2005-05-30 12:12:14
Gene Name:
Confidence Code:3
GeneProduct:putative ATP-NAD kinase
Cell Localization:()
Synonyms:PA1572
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(8) Central intermediary metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam01513
Secondary Functional Category(ies):putative enzyme
EC Number:2.7.1.23
Status:ACTIVE
Pathway:
Homology:
Structural Features:
pfam01513, NAD_kinase, ATP-NAD kinase. 
CD-Length = 355 residues, 100.0% aligned
Score =  348 bits (894), Expect = 6e-97
Identities = 81/355 (22%), Positives = 121/355 (34%), Gaps = 90/355 (25%)
Genomic Context:
Comment:
ReferenceID:3431
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:20578
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:37280
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:1714_cdd.html
URL:
Homologs By Global Alignment
Gene ID:1714

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
3012 PA1572_tr translation of PA1572 381 98.16 99.47 0 1910.0
93667 gb|AAG04961.1|AE004585_9 (AE004585) conserved hypothetical protein [Pseudomonas aeruginosa PAO1] 381 98.16 99.47 0 1910.0
93668 gb|AAN56085.1|AE015744_6 (AE015744) conserved hypothetical protein [Shewanella oneidensis MR-1] 386 46.63 63.73 15 862.0
93671 gb|AAG19237.1| (AE005019) Vng0764c [Halobacterium sp. NRC-1] 388 40.20 52.57 37 591.0
93670 dbj|BAA30787.1| (AP000006) 377aa long hypothetical protein [Pyrococcus horikoshii] 400 39.75 55.00 42 601.0
GC ORFID: 44716How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA1572Glimmer Score:
Start: 1023311Stop: 1024456
Length: 1146
Start Codon: ATGTruncated Start:
Stop Codon: TAGTruncated Stop:
Homolog: t_PA1572 translation of PA1572Homolog Bit Score 740.0
Other Homologs: t_PA1572 (ORF: GLIMMER)
GC ORF Sequence
ATGGACATGTTTCGCCTGGGATTGGTGGTCAATCCCCTGGCCGGGCTGGGTGGCCCGGTCGCCTTGAAGGGC
AGCGACGGGGTGGCTGCCGAGGCCCTGGCCAGAGGCGCCGAACCACGTGCGCTGGAGCGCACCCGGATAGCC
CTGGAGTGCCTGTTGCCGCTGGTCGAGAAGATCGAGTTCCTGACCTTTCCCGGGGCCATGGGCGGCGAGTTG
CTCGAGCGCATGGGCTTCCGCCATCGCCTGCTCGGCGAGTGGCAGGGAGCGGTCAGCAGCGCGGCGGATACC
CGGTTGGCGGTCGAGCGTTTGCAGGAGGCCGGCGTCGCCCTGATCCTGTTCGCCGGTGGTGATGGCACAGCA
CGGGATGTTGCCGGGGTGGTGCGCGAGCAACAGCCGGTGCTCGGCATTCCGGCCGGGGTGAAGATCCACTCC
GGGGTCTATGCCATCAGTCCGCGCGCGGCCGGCGAATTGGCCAGGCGCCTGGTCGAGGGCGGCCTGGTGCGC
CTGGCCAGCGGCGAGGTGCGCGATCTCGACGAAGAGGCGCTGCGCGCCGGCCGCGTCGCCGCGCGTTGGTAC
GGCGAGATGACGGTGCCGGAGGAGGGCCACTTCATGCAGCACGTGAAGCAGGCAGGGATGGAGTCCGAGGAG
CTGGTGCTGGTGGACCTCGCCGATTGGCTGGCGGAAAGCTGGGAAGACGGCGTGCGTTATGTGCTCGGACCG
GGCTCGACCCTGCATGGCCTGGCGCGCAACCTCGGCCTGGAAACCACCCTGCTGGGCGTCGACGTGCTGGAG
AATGGCGCGGTGCTCGCCCGCGACGTCGACGAGGCGCGGCTGTTCGAACTGGTGGACGGTCATCCGGCGTTC
CTGCTGGTCACCGCCATCGGCGGCCAGGGCCACGTGATCGGTCGCGGCAACCAGCAGATCAGTCCCCGGGTG
TTGCGCGCCATCGGCCTGGAGCGCATGCGGGTGGTCGCCACCAAGCGCAAGCTGGGGACCCTCGGGGGCCGC
CCGTTGCTGGTCGACAGCGGCGACCCGGTGCTGGACGACAGCTTCCCGGACGCCATCCGGGTCTGGGCCGGC
TACAAGGAAGAACTGCTGTATCCGCTGGGATACGCGAAGGACCAGGACACGCCCGCGGGCGCTTAG