ViewGene
Locus Name:
GeneID:
Location:

GeneID:1712
TrivialName: PA14_61090
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_61090
PAO1 Ortholog Locus:PA4617
Sequence Length:1125
Protein Length:374
Start: 5447439
Stop: 5448563
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08005.1|AE004875_11 (AE004875) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 373/374 (99%), Positives = 373/374 (99%)
Sequence:
ATGCCTCTATTCGCCACCCCCTTCGCCCAGCTCGATCTGGTCCGCCAGCCCGAGCAGGACGGCGAGCCCCTC
CAGGCGTTCGACGCCGCCGACGAATACCTGCTCAACCAGTTGCACGAACGGGGCGTGACGGCGCAATGCCGG
GTGCTGGTCCTCAACGACGCCTTCGGCGCCCTCGCCGCGAGCCTGGCGCCGCACGTCCAGGTCACCAGCAGC
GGCGATTCGCACCTGGGCTTCCTTGCCCTGCGCAAGAACCTCGCGCGCAACGGCCTCGACCTGGGCTCGGTG
CGCTTCGTCCCGGCCAGCGAAACCGCCGTGGGGCCCTTCGATCACGTGTTGGTCAAGGTGCCGAAGACCCTC
GCGTTGCTGGAGGAGCAACTGATCCGCCTGCACGGCCAACTGGCACCGGGCGCGCAGGTCGTCGCCGCGGGG
ATGGTCAAGCACTTGCCACGCGCCGCCGGCGACCTGCTGGAACGCTACATCGGCCCGATGCACGCTTCGCTG
GCGGTGAAGAAGGCCCGCCTGCTGATCGCCGAGGCAGCGGAGCGCCCGCAACCGCGCTCGCCCTATCCGACC
CGCTATCGCCTGGAGCAGCCGCCGCTGACGCTGCTCAACCACGCCAACGTATTCTGCCGAGAAGGTCTCGAC
ATCGGCACCCGCGCCTTCCTCCCGCACCTGCCGCGCAGCCTCGGCGCGCTACGCGCCGCCGACCTGGGCTGC
GGCAACGGGGTGCTCGGCATCGCCTACGCGCTGCTCAACCCGCAGGCCGAGCTGACCCTGGTGGATGAGTCG
TACATGGCCGTGCAATCGGCACGGGAAAACTGGCGAGCAGCGCTGGGCGAGCGGCCGGCGACGTTCCGCGCC
GACGATGGCCTGGCCGGCCAGGCGGCGGGCTCGCTGGACCTGGTCCTGTGCAACCCACCGTTCCACCAGCAG
CAGGTGGTCGGCGACTTCCTCGCCTGGCGCATGTTTCTCCAGGCTCGCGATGCCCTGGCGGCGGGCGGCGAA
CTGTGGATCGTCGGCAACCGCCACCTGGGCTACCACGCCAAGCTCAAGCGGCTGTTCCGCGGGGTCGAGCAG
GTCGCGGCGAATCCGAAGTTCGTGATCCTGAAAGCGGGAAAATAG
Translation:
MPLFATPFAQLDLVRQPEQDGEPLQAFDAADEYLLNQLHERGVTAQCRVLVLNDAFGALAASLAPHVQVTSS
GDSHLGFLALRKNLARNGLDLGSVRFVPASETAVGPFDHVLVKVPKTLALLEEQLIRLHGQLAPGAQVVAAG
MVKHLPRAAGDLLERYIGPMHASLAVKKARLLIAEAAERPQPRSPYPTRYRLEQPPLTLLNHANVFCREGLD
IGTRAFLPHLPRSLGALRAADLGCGNGVLGIAYALLNPQAELTLVDESYMAVQSARENWRAALGERPATFRA
DDGLAGQAAGSLDLVLCNPPFHQQQVVGDFLAWRMFLQARDALAAGGELWIVGNRHLGYHAKLKRLFRGVEQ
VAANPKFVILKAGK*
AnnotationID:1721GeneID:1712
AnnotatorUID: diggins
Modification Date/Time: 2005-05-06 07:07:07
Gene Name:
Confidence Code:3
GeneProduct:putative nucleotide methyltransferase
Cell Localization:()
Synonyms:PA4617
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(26) Translation, post-translational modification, degradation
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2813
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN70221.1|AE016661_7 (AE016791) nucleotide methyltransferase, putative [Pseudomonas
           putida KT2440]
          Length = 374

 Score =  576 bits (1485), Expect = e-164
 Identities = 292/374 (78%), Positives = 318/374 (85%)


>gb|AAN82287.1|AE016767_47 (AE016767) Putative ribosomal RNA small subunit methyltransferase D
           [Escherichia coli CFT073]
          Length = 378

 Score =  280 bits (717), Expect = 8e-75
 Identities = 167/370 (45%), Positives = 220/370 (59%), Gaps = 7/370 (1%)








 
Structural Features:
COG2813, RsmC, 16S RNA G1207 methylase RsmC 
[Translation, ribosomal structure and biogenesis]
CD-Length = 300 residues,  99.3% aligned
Score =  289 bits (742), Expect = 6e-79
Identities = 122/302 (40%), Positives = 154/302 (50%), Gaps = 4/302 (1%)







   
Genomic Context:






   
Comment:


















    ReferenceID:3427




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20574




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31607




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1712_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1712
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3010
                           PA4617_tr
                           translation of PA4617
                           374
                           99.73
                           99.73
                           0
                           1914.0
     

     
     
93501
                           gb|AAG08005.1|AE004875_11
                           (AE004875) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           374
                           99.73
                           99.73
                           0
                           1914.0
     

     
     
93502
                           gb|AAN70221.1|AE016661_7
                           (AE016791) nucleotide methyltransferase, putative [Pseudomonas putida KT2440]
                           374
                           78.07
                           85.02
                           0
                           1485.0
     

     
     
93503
                           gb|AAO58091.1|
                           (AE016872) methyltransferase, putative [Pseudomonas syringae pv. tomato str. DC3000]
                           376
                           72.60
                           79.52
                           4
                           1351.0
     

     
     
93505
                           dbj|BAC69154.1|
                           (AP005026) hypothetical protein [Streptomyces avermitilis MA-4680]
                           389
                           48.84
                           60.41
                           24
                           822.0
     

     






      

          
GC ORFID: 44714How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4617Glimmer Score: 

          
Start: 4711119Stop: 4712243

          
Length: 1125


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA4617 translation of PA4617Homolog Bit Score 741.0

          
Other Homologs:  psyr_15may02_Scaffold4_revised_gene5651 (ORF: BLASTX 538.0), t_PA4617 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCCTCTATTCGCCACCCCCTTCGCCCAGCTCGATCTGGTCCGCCAGCCCGAGCAGGACGGCGAGCCCCTC 
CAGGCGTTCGACGCCGCCGACGAATACCTGCTCAACCAGTTGCACGAACGGGGCGTGACGGCGCAATGCCGG 
GTGCTGGTCCTCAACGACGCCTTCGGCGCCCTCGCCGCGAGCCTGGCGCCGCACGTCCAGGTCACCAGCAGC 
GGCGATTCGCACCTGGGCTTCCTTGCCCTGCGCAAGAACCTCGCGCGCAACGGCCTCGACCTGGGCTCGGTG 
CGCTTCGTCCCGGCCAGCGAAACCGCCGTGGGGCCCTTCGATCACGTGTTGGTCAAGGTGCCGAAGACCCTC 
GCGTTGCTGGAGGAGCAACTGATCCGCCTGCACGGCCAACTGGCACCGGGCGCGCAGGTCGTCGCCGCGGGG 
ATGGTCAAGCACTTGCCACGCGCCGCCGGCGACCTGCTGGAACGCTACATCGGCCCGATGCACGCTTCGCTG 
GCGGTGAAGAAGGCCCGCCTGCTGATCGCCGAGGCAGCGGAGCGCCCGCAACCGCGCTCGCCCTATCCGACC 
CGCTATCGCCTGGAGCAGCCGCCGCTGACGCTGCTCAACCACGCCAACGTATTCTGCCGAGAAGGTCTCGAC 
ATCGGCACCCGCGCCTTCCTCCCGCACCTGCCGCGCAGCCTCGGCGCGCTACGCGCCGCCGACCTGGGCTGC 
GGCAACGGGGTGCTCGGCATCGCCTACGCGCTGCTCAACCCGCAGGCCGAGCTGACCCTGGTGGATGAGTCG 
TACATGGCCGTGCAATCGGCACGGGAAAACTGGCGAGCAGCGCTGGGCGAGCGGCCGGCGACGTTCCGCGCC 
GACGATGGCCTGGCCGGCCAGGCGGCGGGCTCGCTGGACCTGGTCCTGTGCAACCCACCGTTCCACCAGCAG 
CAGGTGGTCGGCGACTTCCTCGCCTGGCGCATGTTTCTCCAGGCTCGCGATGCCCTGGCGGCGGGCGGCGAA 
CTGTGGATCGTCGGCAACCGCCACCTGGGCTACCACGCCAAGCTCAAGCGGCTGTTCCGCGGGGTCGAGCAG 
GTCGCGGCGAATCCGAAGTTCGTGATCCTGAAAGCGGGAAAATAG