ViewGene
Locus Name:
GeneID:
Location:

GeneID:1711
TrivialName: PA14_23800
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_23800
PAO1 Ortholog Locus:PA3117
Sequence Length:1113
Protein Length:370
Start: 2067690
Stop: 2068802
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06505.1|AE004736_2 (AE004736) aspartate semialdehyde dehydrogenase [Pseudomonas aeruginosa PAO1]
Identities = 370/370 (100%), Positives = 370/370 (100%)
Sequence:
ATGAAGCGTGTAGGTCTGATCGGTTGGCGCGGGATGGTGGGTTCCGTACTCATGCAGCGGATGCTGGAAGAG
CGGGACTTCGACCTGATCGAGCCGGTGTTCTTCACCACGTCGAACGTCGGTGGCCAGGGCCCGGAAGTGGGC
AAGGACATCGCTCCGCTGAAGGACGCCTACAGCATCGACGAGCTGAAGACCCTCGACGTGATCCTGACCTGC
CAGGGCGGCGACTACACCAGCGAAGTATTCCCCAAGCTGCGCGAGGCCGGCTGGCAGGGCTACTGGATCGAT
GCCGCCTCCAGCCTGCGCATGGAAGACGACGCGGTGATCGTCCTCGACCCGGTCAACCGCAAGGTCATCGAC
CAGGCCCTGGACGCCGGCACCCGCAACTACATCGGCGGCAACTGCACCGTCAGCCTGATGCTGATGGCCCTG
GGCGGGCTGTTCGACGCCGGCCTGGTCGAGTGGATGAGCGCCATGACCTACCAGGCCGCCTCCGGCGCCGGC
GCGCAGAACATGCGTGAACTGCTCAAGCAGATGGGCGCCGCCCATGCATCGGTGGCGGATGACCTGGCCAAC
CCGGCCAGCGCGATCCTCGACATCGATCGCAAGGTGGCGGAGACCCTGCGCAGCGAAGCCTTCCCCACCGAG
CATTTCGGCGCGCCGCTGGGCGGCAGCCTGATCCCCTGGATCGACAAGGAACTGCCCAACGGGCAGAGCCGC
GAAGAGTGGAAGGCCCAGGCGGAGACCAACAAGATCCTCGCCCGCTTCAAGAACCCGATCCCGGTCGACGGT
ATCTGCGTGCGCGTCGGCGCCATGCGTTGCCACAGCCAGGCACTGACCATCAAGTTGAACAAGGATGTGCCG
CTGACCGACATCGAGGGCCTGATCAGCCAGCACAATCCCTGGGTCAAACTGGTGCCGAACCACCGCGAGGTA
AGCGTGCGCGAGCTGACCCCGGCCGCCGTCACCGGCACCCTGAGCGTTCCGGTCGGGCGCCTGCGCAAGCTG
AACATGGGCTCCCAGTATCTCGGCGCCTTCACCGTCGGCGACCAGTTGCTGTGGGGCGCTGCCGAGCCGCTG
CGGCGCATGCTGCGGATTCTGCTGGAGCGCTGA
Translation:
MKRVGLIGWRGMVGSVLMQRMLEERDFDLIEPVFFTTSNVGGQGPEVGKDIAPLKDAYSIDELKTLDVILTC
QGGDYTSEVFPKLREAGWQGYWIDAASSLRMEDDAVIVLDPVNRKVIDQALDAGTRNYIGGNCTVSLMLMAL
GGLFDAGLVEWMSAMTYQAASGAGAQNMRELLKQMGAAHASVADDLANPASAILDIDRKVAETLRSEAFPTE
HFGAPLGGSLIPWIDKELPNGQSREEWKAQAETNKILARFKNPIPVDGICVRVGAMRCHSQALTIKLNKDVP
LTDIEGLISQHNPWVKLVPNHREVSVRELTPAAVTGTLSVPVGRLRKLNMGSQYLGAFTVGDQLLWGAAEPL
RRMLRILLER*
AnnotationID:1720GeneID:1711
AnnotatorUID: diggins
Modification Date/Time: 2005-04-13 07:07:44
Gene Name:asd
Confidence Code:1
GeneProduct: aspartate semialdehyde dehydrogenase
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(2) Amino acid biosynthesis and metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0136
Secondary Functional Category(ies):
EC Number:1.2.1.11
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN67604.1|AE016390_3 (AE016781) aspartate-semialdehyde dehydrogenase [Pseudomonas putida
           KT2440]
          Length = 370

 Score =  696 bits (1795), Expect = 0.0
 Identities = 338/370 (91%), Positives = 358/370 (96%)

>gb|AAM87425.1|AE013992_1 (AE013992) aspartate-semialdehyde dehydrogenase [Yersinia pestis
           KIM]
          Length = 367

 Score =  535 bits (1377), Expect = e-151
 Identities = 261/368 (70%), Positives = 298/368 (80%), Gaps = 1/368 (0%)

>gb|AAN82658.1|AE016768_76 (AE016768) Aspartate-semialdehyde dehydrogenase [Escherichia coli
           CFT073]
          Length = 387

 Score =  529 bits (1362), Expect = e-149
 Identities = 255/367 (69%), Positives = 301/367 (82%), Gaps = 1/367 (0%)






 
Structural Features:
COG0136, Asd, Aspartate-semialdehyde dehydrogenase 
[Amino acid transport and metabolism]
CD-Length = 334 residues, 100.0% aligned
Score =  346 bits (888), Expect = 3e-96
Identities = 123/370 (33%), Positives = 170/370 (45%), Gaps = 38/370 (10%)






   
Genomic Context:






   
Comment:


















    ReferenceID:3425




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20572




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32408




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1711_cdd.html


    		




 
URL:

















    ReferenceID:33600




  
Author/Investigator(s):
        Hoang TT, Williams S, Schweizer HP, Lam JS.





  
Title:
        Molecular genetic analysis of the region containing the essential Pseudomonas aeruginosa asd gene encoding aspartate-beta-semialdehyde dehydrogenase.




  
PubMed:
        9084174


MedLine:
        




    
Source:
Microbiology. 1997 Mar;143 ( Pt 3):899-907.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=9084174









           
Homologs By Global Alignment 

           

       



     
Gene ID:1711
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3009
                           PA3117_tr
                           translation of PA3117
                           370
                           99.99
                           99.99
                           0
                           1912.0
     

     
     
93411
                           gb|AAG06505.1|AE004736_2
                           (AE004736) aspartate semialdehyde dehydrogenase [Pseudomonas aeruginosa PAO1]
                           370
                           99.99
                           99.99
                           0
                           1912.0
     

     
     
93412
                           gb|AAB51626.1|
                           (U11055) aspartate semialdehyde dehydrogenase [Pseudomonas aeruginosa]
                           371
                           97.03
                           97.57
                           1
                           1840.0
     

     
     
93413
                           gb|AAN67604.1|AE016390_3
                           (AE016781) aspartate-semialdehyde dehydrogenase [Pseudomonas putida KT2440]
                           370
                           91.35
                           96.75
                           0
                           1795.0
     

     
     
93415
                           gb|AAO55693.1|
                           (AE016863) aspartate-semialdehyde dehydrogenase [Pseudomonas syringae pv. tomato str. DC3000]
                           370
                           90.27
                           95.13
                           0
                           1768.0
     

     






      

          
GC ORFID: 44713How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3117Glimmer Score: 

          
Start: 2886241Stop: 2885129

          
Length: 1113


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3117 translation of PA3117Homolog Bit Score 741.0

          
Other Homologs:  psyr_15may02_Scaffold1_revised_gene971 (ORF: BLASTX 686.0), t_PA3117 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAAGCGTGTAGGTCTGATCGGTTGGCGCGGGATGGTGGGTTCCGTACTCATGCAGCGGATGCTGGAAGAG 
CGGGACTTCGACCTGATCGAGCCGGTGTTCTTCACCACGTCGAACGTCGGTGGCCAGGGCCCGGAAGTGGGC 
AAGGACATCGCTCCGCTGAAGGACGCCTACAGCATCGACGAGCTGAAGACCCTCGACGTGATCCTGACCTGC 
CAGGGCGGCGACTACACCAGCGAAGTATTCCCCAAGCTGCGCGAGGCCGGCTGGCAGGGCTACTGGATCGAT 
GCCGCCTCCAGCCTGCGCATGGAAGACGACGCGGTGATCGTCCTCGACCCGGTCAACCGCAAGGTCATCGAC 
CAGGCCCTGGACGCCGGCACCCGCAACTACATCGGCGGCAACTGCACCGTCAGCCTGATGCTGATGGCCCTG 
GGCGGGCTGTTCGACGCCGGCCTGGTCGAGTGGATGAGCGCCATGACCTACCAGGCCGCCTCCGGCGCCGGC 
GCGCAGAACATGCGTGAACTGCTCAAGCAGATGGGCGCCGCCCATGCATCGGTGGCGGATGACCTGGCCAAC 
CCGGCCAGCGCGATCCTCGACATCGATCGCAAGGTGGCGGAGACCCTGCGCAGCGAAGCCTTCCCCACCGAG 
CATTTCGGCGCGCCGCTGGGCGGCAGCCTGATCCCCTGGATCGACAAGGAACTGCCCAACGGGCAGAGCCGC 
GAAGAGTGGAAGGCCCAGGCGGAGACCAACAAGATCCTCGCCCGCTTCAAGAACCCGATCCCGGTCGACGGT 
ATCTGCGTGCGCGTCGGCGCCATGCGTTGCCACAGCCAGGCACTGACCATCAAGTTGAACAAGGATGTGCCG 
CTGACCGACATCGAGGGCCTGATCAGCCAGCACAATCCCTGGGTCAAACTGGTGCCGAACCACCGCGAGGTA 
AGCGTGCGCGAGCTGACCCCGGCCGCCGTCACCGGCACCCTGAGCGTTCCGGTCGGGCGCCTGCGCAAGCTG 
AACATGGGCTCCCAGTATCTCGGCGCCTTCACCGTCGGCGACCAGTTGCTGTGGGGCGCTGCCGAGCCGCTG 
CGGCGCATGCTGCGGATTCTGCTGGAGCGCTGA