ViewGene
Locus Name:
GeneID:
Location:

GeneID:1710
TrivialName: PA14_25960
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_25960
PAO1 Ortholog Locus:PA2945
Sequence Length:1128
Protein Length:375
Start: 2263799
Stop: 2264926
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06333.1|AE004721_1 (AE004721) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 373/375 (99%), Positives = 373/375 (99%)
Sequence:
GTGGCGAATCCGTTGCGCGGCCCCTGCGTCCGCGCCACTCGTCCGCATGCCCGCCGAGCTGAACAAGGGCTG
CCCATGAAAACCCTGGCGAAACTCCCCGTCACCATCGTCACCGGCTTCCTCGGCGCCGGCAAGACCACCTTG
CTCCGGCACATGCTGGACAACGCCGAAGGCCGGCGCATCGCGGTGATCGTCAACGAGTTCGGCGAACTCGGC
ATCGACGGCGAGATCCTCAAGCAATGTTCCATCGGTTGCAGCGAAGAAGAGGCGCAGGGCCGCGTTTTCGAG
CTGGCCAACGGTTGCCTGTGCTGCACCGTGCAGGAAGAGTTCTTCCCGGTGATGCGCGAGCTGGTGGCGCGC
CGCGGCGACCTTGACCAGATCCTCATCGAGACCAGCGGCCTGGCCCTGCCCAAGCCGCTGGTGCAGGCTTTC
CAGTGGCCGGAAATCCGCAACGCCTGCACGGTCGACGCGGTGATCACCGTGGTCGACAGCCCGGCGGTGGCG
GCCGGCACCTTCGCCGCCCATCCCGAGCAGGTGGACCAGCAACGCCGCCAGGACCCCAACCTCGACCATGAA
TCACCGTTGCACGAACTGTTCGAGGACCAGTTGGCCAGCGCCGACCTGGTGATCCTGAACAAGGCCGACCAG
CTCGACGCCGAGGCCCTGGTGCGGGTCCGCGCGGAGATCGCCAGGGAGCTGCCGGCGGCGGTGAAGATCGTC
GAGGCGAGCCGGGGCGAGCTGCCGCTCCCGGTCTTGCTGGGCCTCAACGCCGAGGCCGAGCTGCACATCGAC
GGCCGGCCGACCCACCACGACCATGAAGGCCACGAGGACCACGACCACGACGAGTTCGACTCCTTCCACGTC
GATCTCCCCGAGGTGGAGGAAGCTGCGCTGCTCGAGGCCCTCGGCGAGCTGGTGGAGCGTCACGACATACTT
CGCATCAAGGGGTTCGCCGCCATTCCGGGCAAGCCCATGCGCCTGTTGGTGCAGGGCGTCGGCAAGCGCTTC
GACAGGCATTTCGACCGCAAGTGGCTGGCCGACGAAGCCCGCAGTACCCGGCTGGTGGTGATCGGCCAGGAG
CTGGACCAGGCCGCCATCGCCAACCAGCTGCGCACAGCGCTTGCCTGA
Translation:
MANPLRGPCVRATRPHARRAEQGLPMKTLAKLPVTIVTGFLGAGKTTLLRHMLDNAEGRRIAVIVNEFGELG
IDGEILKQCSIGCSEEEAQGRVFELANGCLCCTVQEEFFPVMRELVARRGDLDQILIETSGLALPKPLVQAF
QWPEIRNACTVDAVITVVDSPAVAAGTFAAHPEQVDQQRRQDPNLDHESPLHELFEDQLASADLVILNKADQ
LDAEALVRVRAEIARELPAAVKIVEASRGELPLPVLLGLNAEAELHIDGRPTHHDHEGHEDHDHDEFDSFHV
DLPEVEEAALLEALGELVERHDILRIKGFAAIPGKPMRLLVQGVGKRFDRHFDRKWLADEARSTRLVVIGQE
LDQAAIANQLRTALA*
AnnotationID:1719GeneID:1710
AnnotatorUID: diggins
Modification Date/Time: 2005-04-08 17:05:22
Gene Name:
Confidence Code:3
GeneProduct:putative cobalamin biosynthesis protein cobW
Cell Localization:()
Synonyms:cobW
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(4) Biosynthesis of cofactors, prosthetic groups and carriers
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam02492
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO56637.1| (AE016867) cobalamin synthesis protein/P47K family protein
           [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 354

 Score =  568 bits (1464), Expect = e-161
 Identities = 282/353 (79%), Positives = 309/353 (87%), Gaps = 3/353 (0%)

>gb|AAN69109.1|AE016544_7 (AE016787) cobalamin biosynthesis protein CobW [Pseudomonas putida
           KT2440]
          Length = 355

 Score =  568 bits (1464), Expect = e-161
 Identities = 285/353 (80%), Positives = 313/353 (88%), Gaps = 4/353 (1%)

>dbj|BAB75091.1| (AP003592) cobalamin synthesis protein [Nostoc sp. PCC 7120]
          Length = 346

 Score =  387 bits (995), Expect = e-107
 Identities = 195/342 (57%), Positives = 252/342 (73%), Gaps = 4/342 (1%)








 
Structural Features:
pfam02492, cobW, Cobalamin synthesis protein/P47K.
CD-Length = 328 residues, 100.0% aligned
Score =  305 bits (783), Expect = 5e-84
Identities = 144/355 (40%), Positives = 193/355 (54%), Gaps = 38/355 (10%)






   
Genomic Context:






   
Comment:


















    ReferenceID:14417




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20570




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36123




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1710_cdd.html


    		




 
URL:

















    ReferenceID:36426




  
Author/Investigator(s):
        Crouzet J, Levy-Schil S, Cameron B, Cauchois L, Rigault S, Rouyez MC, Blanche F, Debussche L, Thibaut D.





  
Title:
        Nucleotide sequence and genetic analysis of a 13.1-kilobase-pair Pseudomonas denitrificans DNA fragment containing five cob genes and identification of structural genes encoding Cob(I)alamin adenosyltransferase, cobyric acid synthase, and bifunctional cob




  
PubMed:
        1655697


MedLine:
        




    
Source:
J Bacteriol. 1991 Oct;173(19):6074-87.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=1655697









           
Homologs By Global Alignment 

           

       



     
Gene ID:1710
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3008
                           PA2945_tr
                           translation of PA2945
                           375
                           99.46
                           99.46
                           0
                           1913.0
     

     
     
93389
                           gb|AAG06333.1|AE004721_1
                           (AE004721) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           375
                           99.20
                           99.46
                           0
                           1910.0
     

     
     
93391
                           gb|AAN69109.1|AE016544_7
                           (AE016787) cobalamin biosynthesis protein CobW [Pseudomonas putida KT2440]
                           380
                           75.00
                           82.36
                           30
                           1469.0
     

     
     
93390
                           gb|AAO56637.1|
                           (AE016867) cobalamin synthesis protein/P47K family protein [Pseudomonas syringae pv. tomato str. DC3000]
                           379
                           74.40
                           81.53
                           29
                           1467.0
     

     
     
93392
                           dbj|BAB75091.1|
                           (AP003592) cobalamin synthesis protein [Nostoc sp. PCC 7120]
                           378
                           52.91
                           67.72
                           35
                           997.0
     

     






      

          
GC ORFID: 44712How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2945Glimmer Score: 

          
Start: 2690126Stop: 2688999

          
Length: 1128


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2945 translation of PA2945Homolog Bit Score 741.0

          
Other Homologs:  psyr_15may02_Scaffold7_revised_gene7244 (ORF: BLASTX 575.0), t_PA2945 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGGCGAATCCGTTGCGCGGCCCCTGCGTCCGCGCCACTCGTCCGCATGCCCGCCGAGCTGAACAAGGGCTG 
CCCATGAAAACCCTGGCGAAACTCCCCGTCACCATCGTCACCGGCTTCCTCGGCGCCGGCAAGACCACCTTG 
CTCCGGCACATGCTGGACAACGCCGAAGGCCGGCGCATCGCGGTGATCGTCAACGAGTTCGGCGAACTCGGC 
ATCGACGGCGAGATCCTCAAGCAATGTTCCATCGGTTGCAGCGAAGAAGAGGCGCAGGGCCGCGTTTTCGAG 
CTGGCCAACGGTTGCCTGTGCTGCACCGTGCAGGAAGAGTTCTTCCCGGTGATGCGCGAGCTGGTGGCGCGC 
CGCGGCGACCTTGACCAGATCCTCATCGAGACCAGCGGCCTGGCCCTGCCCAAGCCGCTGGTGCAGGCTTTC 
CAGTGGCCGGAAATCCGCAACGCCTGCACGGTCGACGCGGTGATCACCGTGGTCGACAGCCCGGCGGTGGCG 
GCCGGCACCTTCGCCGCCCATCCCGAGCAGGTGGACCAGCAACGCCGCCAGGACCCCAACCTCGACCATGAA 
TCACCGTTGCACGAACTGTTCGAGGACCAGTTGGCCAGCGCCGACCTGGTGATCCTGAACAAGGCCGACCAG 
CTCGACGCCGAGGCCCTGGTGCGGGTCCGCGCGGAGATCGCCAGGGAGCTGCCGGCGGCGGTGAAGATCGTC 
GAGGCGAGCCGGGGCGAGCTGCCGCTCCCGGTCTTGCTGGGCCTCAACGCCGAGGCCGAGCTGCACATCGAC 
GGCCGGCCGACCCACCACGACCATGAAGGCCACGAGGACCACGACCACGACGAGTTCGACTCCTTCCACGTC 
GATCTCCCCGAGGTGGAGGAAGCTGCGCTGCTCGAGGCCCTCGGCGAGCTGGTGGAGCGTCACGACATACTT 
CGCATCAAGGGGTTCGCCGCCATTCCGGGCAAGCCCATGCGCCTGTTGGTGCAGGGCGTCGGCAAGCGCTTC 
GACAGGCATTTCGACCGCAAGTGGCTGGCCGACGAAGCCCGCAGTACCCGGCTGGTGGTGATCGGCCAGGAG 
CTGGACCAGGCCGCCATCGCCAACCAGCTGCGCACAGCGCTTGCCTGA