ViewGene

Locus Name:
GeneID:
Location:

GeneID: 171

TrivialName: PA14_17580

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_17580

PAO1 Ortholog Locus: PA3613

Sequence Length: 2406

Protein Length: 801

Start: 1509670

Stop: 1512075

Strand: +

Type:

ChromosomeID: 2

Status: ACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAG07001.1|AE004781_9 (AE004781) hypothetical protein [Pseudomonas aeruginosa PAO1] Identities = 799/801 (99%), Positives = 799/801 (99%)

Sequence:

ATGAGTCAGATTCTGCCCAGTCAGGACGAGTTGCTTGCCCATGCGGCGGCCGAGCCGGCGTTTGCCGCGTGG
CTGCAAGGCCATGGTCCGCTCCAGCATAGCGCAGAGACCCGCGCCGCCGTGTTCCGCACCGCTCATCAATTG
GTCCAAGCCGGGCTGCAACCGGACCTGGCCAGCGTCTACCAGCTGTTCCGCGCCCTCGACCGGCTGACCGCC
AGCGCCCTGCGCATCGTCGTGCACATGACCTACGCCCGGCGCATCCGCCTGGACGGCCAGCCCTTGCAGGCC
GAGGATTTCAAGACACAGCCCGAGGGCCACACCGGCGGAGCCCTGAACATGGTCCCGGCCTACGCCGGCTAT
CTGGCACTCAACGTCCTGACCGGCAAGACTCGCGCCTGGCTGATGGGCCAGGGCCATTGCGTGGTCGCCATC
GACGCGCTGAACGTCCTCACCGGCAACCTGCACCCGGAGCAGGAGCGCGCCTATGCCGACGGCGAGGAAGGG
CTGAACCGCTTGCTGCAGGACTTCTACGGCTACGCCCAGGCCCCCAACGGCGCACCGGCGGCGCCACTGGGC
AGCCACGTGAATCCGCATACCGCCGGCGGTATCGCCGAGGGCGGCTACCTCGGCTTCGCCGAATTGCAGTAT
GCGCACATGCCGCTGCCCGGCGAGACCCTGGTGGCGTTCCTCTCCGATGGTGCCGCCGAGGAACAGCGCGGC
AGCGACTGGATTCCGCGCTGGTGGCGAGCCGAGGATTGCGGGGCGGCGCTGCCGGTGATGATCGCCAATGGC
CGGCGCATCGAGCAGCGCACCGAACTGGGCACCCATGAGGGGCTGGAGGGCTTCAAGCTGCATCTGCGCCGC
TGCGGCTTCGATCCGATCAGCTTCGATGGGCGCGACCCGGCCGCCTTCGTCTGTACGCTCTGGGAGATGGAA
CAGCGCCTGGAGCGGCGCGTGCAGGAGAAGAACAGCGGCATCCTCCGCTACCCGCTGCCGATTCCCTACGGC
ATCGCCGAGACGGTCAAGGGCTTCGGCTTCTATGGCGCCGGCAGCAACGCCGCGCACAACCTGCCGCTGCCG
GGCAATCCGCATAACGACGAACAGGCCCGGCAACTGTTCAACCAGCATGCAAACGAACTCTGGGTCGAGCCT
GAGGCTCTCGAATTGGCCCGCCGGCTGTTCGCCGAGCAGCGCGGCGAGCGTCCCCTCGAACGGGACAACCCG
CTGGCCCTGCGCCATCCCATCGAACCGATCATCCCGCCGCTGCGCTATCGCGACGATCCCTGCTCGCCGATG
GCCGCGCTGGACCGCTTCTATACCGAACTGGTGGAGGCCAACCCCGACCTGCGCGCCCGGGTCGGCAATCCC
GACGAATTGGCCAGCAACCGCCTCGGCGGCGTGCTCAAGGCGCTCAAGCATCGGGTCAGCGAGCCGGAGAGC
GAACTGGAATCGGTGAGCGGTCGGGTCATCACCGCGCTCAACGAGGAGGCGGTGGTGTCCGCCTGCCTGGCC
AACCAGGGCGGACTCAACCTGGTTGCCAGCTACGAGGCGTTCTGCGTGAAGATGCTCGGCGCGGTGCGCCAG
ACCCTGATCTTCGCCCGCCAGCAGAAGGAAGTCGGGCGTCCGGCCGGCTGGCTGGGCTGGCCGCTGGTCGCT
ACTTCGCATACCTGGGAGAATGGCAAGAACCAGCAGTCGCACCAGGACACCACCTTCTGCGAGGCCCTGCTT
GGCGAGATGAGTGACATGGTCCGGGTGCTCTTCCCGGCCGATCACAACAGCGCCCTGGCGCTGCTACCGACG
ATCTACCGCAGCCGGGGGCAACTGGCCTGCCTGGTGATCCCCAAGCGCGACCGGCCGATGGTGTTCGACGCC
GTCCAGGCCGAGCGCCTGGCCCGCGACGGCGCGATCCTGGTCGAGGAGCGCTGCGGCTCCGATCCACTGCTG
CTGATCGCCAACGGCAGCTACCAGCTCGAACAGATGCGCCGCGCCGCGCAGCGTCTGGCCGAGGCCGGGCAG
GCCTACCGGCTGGTCTACCTGCAGGAGCCGGGACGCTTCCGCGCGCCGCGCGATCGCTGGGAGGTCGAGGCG
GTGGCCGACGAGGCGTTGGTGGAACGACTGTTCCCGGATAGCCATGAGCGCCGCGTGCTACTCACCCATATG
CGCGCGGAAGTGGCGCGCGGTCATCTTTGGCCGATCCTGCCGGATGCCCGGCGCACCTCGGTACTCGGCTAT
CGCAACCGCGGCGGCACCCTCGACGAGGCGGGCATGCAGTTCGCCAACCGCGCCTGCTGGGGCAACGTGCTG
GCGGCTTGCGCCCGCTTGATGGAGGTGCCGCGCACCGCGCTGCTAACCCCGGAGGAGGCGGCGGCGGTGGCC
GGCAAGGGCGATCCGGCGTTGTTGCGCTGA

Translation:

MSQILPSQDELLAHAAAEPAFAAWLQGHGPLQHSAETRAAVFRTAHQLVQAGLQPDLASVYQLFRALDRLTA
SALRIVVHMTYARRIRLDGQPLQAEDFKTQPEGHTGGALNMVPAYAGYLALNVLTGKTRAWLMGQGHCVVAI
DALNVLTGNLHPEQERAYADGEEGLNRLLQDFYGYAQAPNGAPAAPLGSHVNPHTAGGIAEGGYLGFAELQY
AHMPLPGETLVAFLSDGAAEEQRGSDWIPRWWRAEDCGAALPVMIANGRRIEQRTELGTHEGLEGFKLHLRR
CGFDPISFDGRDPAAFVCTLWEMEQRLERRVQEKNSGILRYPLPIPYGIAETVKGFGFYGAGSNAAHNLPLP
GNPHNDEQARQLFNQHANELWVEPEALELARRLFAEQRGERPLERDNPLALRHPIEPIIPPLRYRDDPCSPM
AALDRFYTELVEANPDLRARVGNPDELASNRLGGVLKALKHRVSEPESELESVSGRVITALNEEAVVSACLA
NQGGLNLVASYEAFCVKMLGAVRQTLIFARQQKEVGRPAGWLGWPLVATSHTWENGKNQQSHQDTTFCEALL
GEMSDMVRVLFPADHNSALALLPTIYRSRGQLACLVIPKRDRPMVFDAVQAERLARDGAILVEERCGSDPLL
LIANGSYQLEQMRRAAQRLAEAGQAYRLVYLQEPGRFRAPRDRWEVEAVADEALVERLFPDSHERRVLLTHM
RAEVARGHLWPILPDARRTSVLGYRNRGGTLDEAGMQFANRACWGNVLAACARLMEVPRTALLTPEEAAAVA
GKGDPALLR*

AnnotationID:181 GeneID:171

AnnotatorUID: diggins

Modification Date/Time: 2005-07-01 20:08:43

Gene Name:

Confidence Code: 3

GeneProduct: conserved hypothetical protein

Cell Localization: ()

Synonyms: PA3613

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (14) Hypothetical, unclassified, unknown

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs: COG3957

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

Structural Features:

COG3957, Phosphoketolase [Carbohydrate transport and metabolism]
CD-Length = 793 residues,  99.4% aligned
Score =  763 bits (1971), Expect = 0.0
Identities = 244/812 (30%), Positives = 333/812 (41%), Gaps = 72/812 (8%)

Genomic Context:

Comment:

ReferenceID:345

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:17487

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

ReferenceID:31929

Author/Investigator(s):

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: Misc (text/plain)

Data: 171_cdd.html

URL:

Homologs By Global Alignment

Gene ID:171

Identity:

10%

20%

30%

40%

50%

60%

70%

80%

90%

100%

HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score

306 PA3613_tr translation of PA3613 801 99.75 99.75 0 4187.0

19419 gb|AAG07001.1|AE004781_9 (AE004781) hypothetical protein PA3613 [Pseudomonas aeruginosa PAO1] 801 99.75 99.75 0 4187.0

GC ORFID: `43173`	How Found: `BLASTX`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name: `t_PA3613`	Glimmer Score:
Start: `3444267`	Stop: `3441862`
Length: `2406`
Start Codon: `ATG`	Truncated Start:
Stop Codon: `TGA`	Truncated Stop:
Homolog: `t_PA3613 translation of PA3613`	Homolog Bit Score `1617.0`
Other Homologs: `t_PA3613 (ORF: GLIMMER)`
GC ORF Sequence
ATGAGTCAGATTCTGCCCAGTCAGGACGAGTTGCTTGCCCATGCGGCGGCCGAGCCGGCGTTTGCCGCGTGG CTGCAAGGCCATGGTCCGCTCCAGCATAGCGCAGAGACCCGCGCCGCCGTGTTCCGCACCGCTCATCAATTG GTCCAAGCCGGGCTGCAACCGGACCTGGCCAGCGTCTACCAGCTGTTCCGCGCCCTCGACCGGCTGACCGCC AGCGCCCTGCGCATCGTCGTGCACATGACCTACGCCCGGCGCATCCGCCTGGACGGCCAGCCCTTGCAGGCC GAGGATTTCAAGACACAGCCCGAGGGCCACACCGGCGGAGCCCTGAACATGGTCCCGGCCTACGCCGGCTAT CTGGCACTCAACGTCCTGACCGGCAAGACTCGCGCCTGGCTGATGGGCCAGGGCCATTGCGTGGTCGCCATC GACGCGCTGAACGTCCTCACCGGCAACCTGCACCCGGAGCAGGAGCGCGCCTATGCCGACGGCGAGGAAGGG CTGAACCGCTTGCTGCAGGACTTCTACGGCTACGCCCAGGCCCCCAACGGCGCACCGGCGGCGCCACTGGGC AGCCACGTGAATCCGCATACCGCCGGCGGTATCGCCGAGGGCGGCTACCTCGGCTTCGCCGAATTGCAGTAT GCGCACATGCCGCTGCCCGGCGAGACCCTGGTGGCGTTCCTCTCCGATGGTGCCGCCGAGGAACAGCGCGGC AGCGACTGGATTCCGCGCTGGTGGCGAGCCGAGGATTGCGGGGCGGCGCTGCCGGTGATGATCGCCAATGGC CGGCGCATCGAGCAGCGCACCGAACTGGGCACCCATGAGGGGCTGGAGGGCTTCAAGCTGCATCTGCGCCGC TGCGGCTTCGATCCGATCAGCTTCGATGGGCGCGACCCGGCCGCCTTCGTCTGTACGCTCTGGGAGATGGAA CAGCGCCTGGAGCGGCGCGTGCAGGAGAAGAACAGCGGCATCCTCCGCTACCCGCTGCCGATTCCCTACGGC ATCGCCGAGACGGTCAAGGGCTTCGGCTTCTATGGCGCCGGCAGCAACGCCGCGCACAACCTGCCGCTGCCG GGCAATCCGCATAACGACGAACAGGCCCGGCAACTGTTCAACCAGCATGCAAACGAACTCTGGGTCGAGCCT GAGGCTCTCGAATTGGCCCGCCGGCTGTTCGCCGAGCAGCGCGGCGAGCGTCCCCTCGAACGGGACAACCCG CTGGCCCTGCGCCATCCCATCGAACCGATCATCCCGCCGCTGCGCTATCGCGACGATCCCTGCTCGCCGATG GCCGCGCTGGACCGCTTCTATACCGAACTGGTGGAGGCCAACCCCGACCTGCGCGCCCGGGTCGGCAATCCC GACGAATTGGCCAGCAACCGCCTCGGCGGCGTGCTCAAGGCGCTCAAGCATCGGGTCAGCGAGCCGGAGAGC GAACTGGAATCGGTGAGCGGTCGGGTCATCACCGCGCTCAACGAGGAGGCGGTGGTGTCCGCCTGCCTGGCC AACCAGGGCGGACTCAACCTGGTTGCCAGCTACGAGGCGTTCTGCGTGAAGATGCTCGGCGCGGTGCGCCAG ACCCTGATCTTCGCCCGCCAGCAGAAGGAAGTCGGGCGTCCGGCCGGCTGGCTGGGCTGGCCGCTGGTCGCT ACTTCGCATACCTGGGAGAATGGCAAGAACCAGCAGTCGCACCAGGACACCACCTTCTGCGAGGCCCTGCTT GGCGAGATGAGTGACATGGTCCGGGTGCTCTTCCCGGCCGATCACAACAGCGCCCTGGCGCTGCTACCGACG ATCTACCGCAGCCGGGGGCAACTGGCCTGCCTGGTGATCCCCAAGCGCGACCGGCCGATGGTGTTCGACGCC GTCCAGGCCGAGCGCCTGGCCCGCGACGGCGCGATCCTGGTCGAGGAGCGCTGCGGCTCCGATCCACTGCTG CTGATCGCCAACGGCAGCTACCAGCTCGAACAGATGCGCCGCGCCGCGCAGCGTCTGGCCGAGGCCGGGCAG GCCTACCGGCTGGTCTACCTGCAGGAGCCGGGACGCTTCCGCGCGCCGCGCGATCGCTGGGAGGTCGAGGCG GTGGCCGACGAGGCGTTGGTGGAACGACTGTTCCCGGATAGCCATGAGCGCCGCGTGCTACTCACCCATATG CGCGCGGAAGTGGCGCGCGGTCATCTTTGGCCGATCCTGCCGGATGCCCGGCGCACCTCGGTACTCGGCTAT CGCAACCGCGGCGGCACCCTCGACGAGGCGGGCATGCAGTTCGCCAACCGCGCCTGCTGGGGCAACGTGCTG GCGGCTTGCGCCCGCTTGATGGAGGTGCCGCGCACCGCGCTGCTAACCCCGGAGGAGGCGGCGGCGGTGGCC GGCAAGGGCGATCCGGCGTTGTTGCGCTGA