ViewGene
Locus Name:
GeneID:
Location:

GeneID:1709
TrivialName: PA14_39410
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_39410
PAO1 Ortholog Locus:PA1943
Sequence Length:1098
Protein Length:365
Start: 3506718
Stop: 3507815
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05331.1|AE004621_2 (AE004621) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 363/365 (99%), Positives = 363/365 (99%)
Sequence:
ATGAACCTGACCCTCCGCCCGGCCGGCACGGACGACCTGTCCGCCCTGGTCGAGCTGGAAAACCGCTGCTTC
GACTACGATCGCCTGTCCCGCCGCAACTTCCAGTGGATGCTCACCCGCGCCCACGCCAGCCTGACGGTAGCC
GAGGGCGACGGCGGCGTGCTCGGCTACGCCCTGGTGCTGTTCCACGAAGGCACCTCGCTGGCCCGCCTCTAC
TCCATCGCCATCGACCCGCGCGCCCGCGGCATCGGCCTCGGCCAGAAGCTGCTGGAAGCCGCCGAGCAGGCC
GCGCGGGACAACGACCGCGCCTACATGCGCCTGGAAGTGCGCCCGGACAACCGTGGCGCCATCGCCCTCTAC
GAGCGCAACGGCTACCGTCCCTTCGCCACCGTGCGCGACTACTACGAGGACCACAGCGAAGCGCTGCGCTTC
GAGAAACGCATCCGCAACCCCGGCCACGACCAGCGCCGCCACGTGCCCTTCTACCGGCAGACCACCGATTTC
ACCTGCGGCCCGGCCTGCCTGCTGATGGCCATGGGCGCGCTGCAACCGGAGCGCCAGTTGACCCGCCGCGAG
GAACTGCGCCTGTGGCGCGAGGCGACCACCATCTACATGACCGCCGGGCACGGCGGCTGTAGCCCCCAGGGC
CTGGCGCTGGCCGCCTGGCGGCGCGGCTTCCGGGTCAAGCTGGTGCTGTCCGCCAGCGGCCCGCTGTTCCTC
GACGGCGTACGCAACGAAGACAAGAAGGCGGTGATGCGCCTGGTCCACGAGGACTTCTGCGAGGAACTGGAC
GCCTCGGGCGTCGAGCAGAAGCGCTCGGCCAGGCTCGACATCCCGCGCCAGCTGGCCAGGGGCGGCCAGCCG
CTGGTGCTGATCAGCAGCTACCGCCTGACCCGCTCCAAGGCCCCGCACTGGGTGCTGGTCACCCACTACGAC
GAGGACTTCGTCTACCTCCACGATCCCGACGTCGACCACAGCCAGCACCGCCAGCCGCTGGACTGCCAGCAC
ATCCCGGTAAGCCACGCCGAGTTCGACAAGATGAGCCGCTTCGGCCGCAGCAAGCTGCGCGCGGCGGTGATC
CTGTTCAACCCGGAATGA
Translation:
MNLTLRPAGTDDLSALVELENRCFDYDRLSRRNFQWMLTRAHASLTVAEGDGGVLGYALVLFHEGTSLARLY
SIAIDPRARGIGLGQKLLEAAEQAARDNDRAYMRLEVRPDNRGAIALYERNGYRPFATVRDYYEDHSEALRF
EKRIRNPGHDQRRHVPFYRQTTDFTCGPACLLMAMGALQPERQLTRREELRLWREATTIYMTAGHGGCSPQG
LALAAWRRGFRVKLVLSASGPLFLDGVRNEDKKAVMRLVHEDFCEELDASGVEQKRSARLDIPRQLARGGQP
LVLISSYRLTRSKAPHWVLVTHYDEDFVYLHDPDVDHSQHRQPLDCQHIPVSHAEFDKMSRFGRSKLRAAVI
LFNPE*
AnnotationID:1718GeneID:1709
AnnotatorUID: diggins
Modification Date/Time: 2005-03-02 13:01:17
Gene Name:
Confidence Code:3
GeneProduct:putative acetyltransferase
Cell Localization:()
Synonyms:PA1943
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0456,pfam00583
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN68565.1|AE016488_9 (AE016785) acetyltransferase, GNAT family [Pseudomonas putida
           KT2440]
          Length = 364

 Score =  443 bits (1139), Expect = e-124
 Identities = 223/361 (61%), Positives = 269/361 (74%)

>gb|AAF95476.1| (AE004303) acetyltransferase, GNAT family [Vibrio cholerae]
          Length = 363

 Score =  281 bits (720), Expect = 3e-75
 Identities = 151/362 (41%), Positives = 218/362 (60%), Gaps = 6/362 (1%)








 
Structural Features:
COG0456, RimI, Acetyltransferases
CD-Length = 177 residues,  93.8% aligned
Score = 90.5 bits (223), Expect = 3e-19
Identities = 54/166 (32%), Positives = 78/166 (46%), Gaps = 15/166 (9%)

pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family.
CD-Length = 82 residues,  98.8% aligned
Score = 68.7 bits (168), Expect = 9e-13
Identities = 35/81 (43%), Positives = 50/81 (61%), Gaps = 1/81 (1%)






   
Genomic Context:






   
Comment:


















    ReferenceID:3421




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20568




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32776




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1709_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1709
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3007
                           PA1943_tr
                           translation of PA1943
                           365
                           99.45
                           99.45
                           0
                           1913.0
     

     
     
93382
                           gb|AAG05331.1|AE004621_2
                           (AE004621) hypothetical protein PA1943 [Pseudomonas aeruginosa PAO1]
                           365
                           99.45
                           99.45
                           0
                           1913.0
     

     
     
93383
                           gb|AAN68565.1|AE016488_9
                           (AE016785) acetyltransferase, GNAT family [Pseudomonas putida KT2440]
                           365
                           61.09
                           73.69
                           1
                           1134.0
     

     
     
93386
                           gb|AAO10192.1|AE016802_235
                           (AE016802) Acetyltransferase [Vibrio vulnificus CMCP6]
                           372
                           41.66
                           59.40
                           13
                           726.0
     

     
     
93387
                           dbj|BAC95392.1|
                           (AP005340) acetyltransferase [Vibrio vulnificus YJ016]
                           372
                           41.66
                           59.13
                           13
                           725.0
     

     






      

          
GC ORFID: 44711How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1943Glimmer Score: 

          
Start: 1447193Stop: 1446096

          
Length: 1098


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1943 translation of PA1943Homolog Bit Score 741.0

          
Other Homologs:  psyr_15may02_Scaffold13_revised_gene2197 (ORF: BLASTX 477.0), t_PA1943 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAACCTGACCCTCCGCCCGGCCGGCACGGACGACCTGTCCGCCCTGGTCGAGCTGGAAAACCGCTGCTTC 
GACTACGATCGCCTGTCCCGCCGCAACTTCCAGTGGATGCTCACCCGCGCCCACGCCAGCCTGACGGTAGCC 
GAGGGCGACGGCGGCGTGCTCGGCTACGCCCTGGTGCTGTTCCACGAAGGCACCTCGCTGGCCCGCCTCTAC 
TCCATCGCCATCGACCCGCGCGCCCGCGGCATCGGCCTCGGCCAGAAGCTGCTGGAAGCCGCCGAGCAGGCC 
GCGCGGGACAACGACCGCGCCTACATGCGCCTGGAAGTGCGCCCGGACAACCGTGGCGCCATCGCCCTCTAC 
GAGCGCAACGGCTACCGTCCCTTCGCCACCGTGCGCGACTACTACGAGGACCACAGCGAAGCGCTGCGCTTC 
GAGAAACGCATCCGCAACCCCGGCCACGACCAGCGCCGCCACGTGCCCTTCTACCGGCAGACCACCGATTTC 
ACCTGCGGCCCGGCCTGCCTGCTGATGGCCATGGGCGCGCTGCAACCGGAGCGCCAGTTGACCCGCCGCGAG 
GAACTGCGCCTGTGGCGCGAGGCGACCACCATCTACATGACCGCCGGGCACGGCGGCTGTAGCCCCCAGGGC 
CTGGCGCTGGCCGCCTGGCGGCGCGGCTTCCGGGTCAAGCTGGTGCTGTCCGCCAGCGGCCCGCTGTTCCTC 
GACGGCGTACGCAACGAAGACAAGAAGGCGGTGATGCGCCTGGTCCACGAGGACTTCTGCGAGGAACTGGAC 
GCCTCGGGCGTCGAGCAGAAGCGCTCGGCCAGGCTCGACATCCCGCGCCAGCTGGCCAGGGGCGGCCAGCCG 
CTGGTGCTGATCAGCAGCTACCGCCTGACCCGCTCCAAGGCCCCGCACTGGGTGCTGGTCACCCACTACGAC 
GAGGACTTCGTCTACCTCCACGATCCCGACGTCGACCACAGCCAGCACCGCCAGCCGCTGGACTGCCAGCAC 
ATCCCGGTAAGCCACGCCGAGTTCGACAAGATGAGCCGCTTCGGCCGCAGCAAGCTGCGCGCGGCGGTGATC 
CTGTTCAACCCGGAATGA