ViewGene

Locus Name:
GeneID:
Location:

GeneID: 1708

TrivialName: PA14_03920

AnnotatorUID: danlee

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_03920

PAO1 Ortholog Locus: PA0300

Sequence Length: 1104

Protein Length: 367

Start: 352562

Stop: 353665

Strand: +

Type:

ChromosomeID: 2

Status: ACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAG03689.1|AE004468_1 (AE004468) polyamine transport protein [Pseudomonas aeruginosa PAO1] Identities = 367/367 (100%), Positives = 367/367 (100%) to spuD (PA0300) of PAO1.

Sequence:

ATGATGAAACGTTTCGGTAAGACCCTGCTCGCCCTGACCTTGGCGGGCTCTGTGGCCGGTATGGCGCAGGCT
GCGGACAACAAGGTACTGCACGTGTACAACTGGTCCGACTACATCGCGCCGGACACCCTGGAGAAGTTCACC
AAGGAAACCGGGATCAAGGTCGTCTACGACGTCTACGACAGCAACGAAGTGCTGGAAGCCAAGTTGCTGGCG
GGCAAGTCCGGGTACGACGTGGTGGTGCCGTCCAACTCCTTCCTCGCCAAGCAGATCAAGGCCGGGGTCTAC
CAGAAGCTCGACAAGTCCAAGCTGCCGAACTGGAAGAACCTGAACAAGGACCTGATGCACACCCTGGAAGTC
AGCGACCCGGGCAACGAGCATGCGATTCCCTACATGTGGGGCACCATCGGCATCGGCTACAACCCGGACAAG
GTCAAGGCGGCCTTCGGCGACAATGCGCCGGTGGATTCCTGGGACCTGGTATTCAAGCCGGAGAACATCCAG
AAGCTGAAGCAGTGCGGCGTCAGCTTCCTCGACTCGCCGACCGAGATTCTCCCGGCGGCCCTGCACTATCTC
GGCTACAAGCCGGACACCGACAATCCCAAGGAACTCAAGGCGGCCGAAGAGCTGTTCCTGAAGATCCGTCCC
TACGTCACCTACTTCCACTCGTCGAAGTACATTTCCGACCTGGCCAACGGCAACATCTGCGTCGCCATCGGC
TACTCCGGCGACATCTACCAGGCCAAGTCCCGCGCCGAAGAGGCGAAGAACAAGGTCACCGTCAAGTACAAC
ATTCCCAAGGAAGGCGCCGGCAGCTTCTTCGACATGGTCGCCATTCCCAAGGACGCCGAGAACACCGAGGGC
GCCCTGGCCTTCGTCAACTTCCTGATGAAGCCGGAAATCATGGCCGAGATCACCGACGTGGTTCAGTTCCCC
AACGGCAACGCAGCGGCCACCCCGCTGGTGTCCGAGGCGATCCGCAACGACCCGGGCATCTACCCGAGCGAA
GAGGTCATGAAGAAGCTGTATACCTTCCCCGACCTGCCGGCCAAGACCCAGCGGGCGATGACCCGCAGCTGG
ACCAAGATCAAGTCCGGCAAGTGA

Translation:

MMKRFGKTLLALTLAGSVAGMAQAADNKVLHVYNWSDYIAPDTLEKFTKETGIKVVYDVYDSNEVLEAKLLA
GKSGYDVVVPSNSFLAKQIKAGVYQKLDKSKLPNWKNLNKDLMHTLEVSDPGNEHAIPYMWGTIGIGYNPDK
VKAAFGDNAPVDSWDLVFKPENIQKLKQCGVSFLDSPTEILPAALHYLGYKPDTDNPKELKAAEELFLKIRP
YVTYFHSSKYISDLANGNICVAIGYSGDIYQAKSRAEEAKNKVTVKYNIPKEGAGSFFDMVAIPKDAENTEG
ALAFVNFLMKPEIMAEITDVVQFPNGNAAATPLVSEAIRNDPGIYPSEEVMKKLYTFPDLPAKTQRAMTRSW
TKIKSGK*

AnnotationID:1717 GeneID:1708

AnnotatorUID: danlee

Modification Date/Time: 2003-10-29 15:03:16

Gene Name: spuD

Confidence Code: 1

GeneProduct: polyamine transport protein

Cell Localization: (8) Periplasmic

Synonyms: alt. Gene Name = potF2

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (27) Transport of small molecules

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs:

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

100% identical to spuD (PA0300) of PAO1.

Structural Features:

Genomic Context:

Comment:

ReferenceID:3419

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:20566

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

Homologs By Global Alignment

Gene ID:1708

Identity:

10%

20%

30%

40%

50%

60%

70%

80%

90%

100%

HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score

3002 PA0300_tr translation of PA0300 367 99.99 99.99 0 1916.0

93326 gb|AAG03689.1|AE004468_1 (AE004468) polyamine transport protein [Pseudomonas aeruginosa PAO1] 367 99.99 99.99 0 1916.0

93328 gb|AAO58733.1| (AE016875) putrescine ABC transporter, periplasmic putrescine-binding protein [Pseudomonas syringae pv. tomato str. DC3000] 367 76.29 85.01 2 1474.0

93327 gb|AAK15487.1|AF323694_2 (AF323694) PotF1 [Pseudomonas fluorescens] 371 75.47 83.82 5 1475.0

93329 gb|AAN70746.1|AE016718_5 (AE016793) putrescine ABC transporter, periplasmic putrescine-binding protein [Pseudomonas putida KT2440] 368 69.56 82.33 4 1343.0

GC ORFID: `44710`	How Found: `BLASTX`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name: `t_PA0300`	Glimmer Score:
Start: `6153904`	Stop: `6155007`
Length: `1104`
Start Codon: `ATG`	Truncated Start:
Stop Codon: `TGA`	Truncated Stop:
Homolog: `t_PA0300 translation of PA0300`	Homolog Bit Score `742.0`
Other Homologs: `psyr_15may02_Scaffold6_revised_gene6511 (ORF: BLASTX 564.0), t_PA0301 (ORF: BLASTX 455.0), t_PA1410 (ORF: BLASTX 445.0), t_PA2711 (ORF: BLASTX 427.0), psyr_15may02_Scaffold6_revised_gene6512 (ORF: BLASTX 416.0), psyr_15may02_Scaffold7_revised_gene7441 (ORF: BLASTX 367.0), t_PA2592 (ORF: BLASTX 359.0), t_PA0300 (ORF: GLIMMER)`
GC ORF Sequence
ATGATGAAACGTTTCGGTAAGACCCTGCTCGCCCTGACCTTGGCGGGCTCTGTGGCCGGTATGGCGCAGGCT GCGGACAACAAGGTACTGCACGTGTACAACTGGTCCGACTACATCGCGCCGGACACCCTGGAGAAGTTCACC AAGGAAACCGGGATCAAGGTCGTCTACGACGTCTACGACAGCAACGAAGTGCTGGAAGCCAAGTTGCTGGCG GGCAAGTCCGGGTACGACGTGGTGGTGCCGTCCAACTCCTTCCTCGCCAAGCAGATCAAGGCCGGGGTCTAC CAGAAGCTCGACAAGTCCAAGCTGCCGAACTGGAAGAACCTGAACAAGGACCTGATGCACACCCTGGAAGTC AGCGACCCGGGCAACGAGCATGCGATTCCCTACATGTGGGGCACCATCGGCATCGGCTACAACCCGGACAAG GTCAAGGCGGCCTTCGGCGACAATGCGCCGGTGGATTCCTGGGACCTGGTATTCAAGCCGGAGAACATCCAG AAGCTGAAGCAGTGCGGCGTCAGCTTCCTCGACTCGCCGACCGAGATTCTCCCGGCGGCCCTGCACTATCTC GGCTACAAGCCGGACACCGACAATCCCAAGGAACTCAAGGCGGCCGAAGAGCTGTTCCTGAAGATCCGTCCC TACGTCACCTACTTCCACTCGTCGAAGTACATTTCCGACCTGGCCAACGGCAACATCTGCGTCGCCATCGGC TACTCCGGCGACATCTACCAGGCCAAGTCCCGCGCCGAAGAGGCGAAGAACAAGGTCACCGTCAAGTACAAC ATTCCCAAGGAAGGCGCCGGCAGCTTCTTCGACATGGTCGCCATTCCCAAGGACGCCGAGAACACCGAGGGC GCCCTGGCCTTCGTCAACTTCCTGATGAAGCCGGAAATCATGGCCGAGATCACCGACGTGGTTCAGTTCCCC AACGGCAACGCAGCGGCCACCCCGCTGGTGTCCGAGGCGATCCGCAACGACCCGGGCATCTACCCGAGCGAA GAGGTCATGAAGAAGCTGTATACCTTCCCCGACCTGCCGGCCAAGACCCAGCGGGCGATGACCCGCAGCTGG ACCAAGATCAAGTCCGGCAAGTGA