ViewGene

Locus Name:
GeneID:
Location:

GeneID:1706
TrivialName: PA14_20900
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_20900
PAO1 Ortholog Locus:PA3336
Sequence Length:1167
Protein Length:388
Start: 1802331
Stop: 1801165
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06724.1|AE004756_2 (AE004756) probable MFS transporter [Pseudomonas aeruginosa PAO1]
Identities = 387/388 (99%), Positives = 388/388 (100%)
Sequence:
ATGCCTTTGATTGTCTACGTGCTCGgTGCCGCGATCTTCGCCCTGACCACCAGCGAATACATGGTCGCCGGG
CTGATGCCGGCGCTGGCCGCcGAAttcgGCGTGTCCTtCGCCGCGATCGGCTACCTGGTCACCTTCTACGCC
GGCGCGATGGCGCTCGGCGGCCCGCTGCTGACCACCGCCCTGCTCCGCGTGCCGCGCAAGAACGCCCTGCTC
GGCCTGATCGCGCTGTTCGTGGTCGGCCAGGTCATCGGCGCCCTGGCGCCGGGCTATGCGGTGATGGTCGCG
GCGCGACTGGTCACCGCGGTCGCCGCCGCGGCCTTCTTCGGCGTGGCGCTGACCGCCTGCGCCGAACTGGTC
GAAGGCAACCAGTTCGGCCGCGCGTCGTCGCTGGTGCTCGGTGGCCTGATGGTCGGAACCGTGCTTGGCCTG
CCCGTCGCCACCTGGCTGGGCGAATGGTACGGCTGGCGCGCGAGCTTCTTCGCGGTGGCGCTGGTGGCGGTG
CTGGTCGGCCTGCTGGTGTTGCAGCTGATGCCGGCGATCCCGGGGTCGGCGGGCAGCGGCTCGCTGCGCGAG
GAACTGAAGGTGTTCAGGAACGCCCATCTATGGTGGGTCTACGCCACCAGCCTACTGCTGATCGGCGCCACC
TTCGCCGGCTTCACCTATTTCGTGCCGATCCTCACCGAGGTCAGCGGCTTCTCCGCCTCGACCGTACCGCTG
CTGCTGGTGGTCTACGGCCTGGCGACGCTGGTGGGCAACAACATCGTCGGCCGCCTGGCCGACCGCCATACC
ATCGCGGTCCTGGCCTTCGGCCTGCTGGCGGCCATCGCCGCGATGGTGGCCTTCGCCCTGTTCGGACAGGTT
CCGGCGGTAGCGGTGGCGGCGCTGGTGGTGATCGGCCTGACCGGGGTGTCGATGAACCCAGCGCTGGTGACC
CGCGGCGCACGTGTCGGCCATAACAACATGCTGGTCAACTCGGTGCACACTGCCTGCATCATGCTCGGCGTG
ATGGCCGGTTCCTGGATCGGCGGCCTGGGCATCGCCGGCGGATTCGGCCTGCAGGGCGCGCTCTGGGTCGGC
GCGGCCCTCGGGGTGCTGGCGCTGCTGACCCTGCTGCCGGAGCTGCGCTTCGCCCGCGCCCCGGTGGGCGGG
GCGCTGGGCCGCTGA
Translation:
MPLIVYVLGAAIFALTTSEYMVAGLMPALAAEFGVSFAAIGYLVTFYAGAMALGGPLLTTALLRVPRKNALL
GLIALFVVGQVIGALAPGYAVMVAARLVTAVAAAAFFGVALTACAELVEGNQFGRASSLVLGGLMVGTVLGL
PVATWLGEWYGWRASFFAVALVAVLVGLLVLQLMPAIPGSAGSGSLREELKVFRNAHLWWVYATSLLLIGAT
FAGFTYFVPILTEVSGFSASTVPLLLVVYGLATLVGNNIVGRLADRHTIAVLAFGLLAAIAAMVAFALFGQV
PAVAVAALVVIGLTGVSMNPALVTRGARVGHNNMLVNSVHTACIMLGVMAGSWIGGLGIAGGFGLQGALWVG
AALGVLALLTLLPELRFARAPVGGALGR*
AnnotationID:1715GeneID:1706
AnnotatorUID: diggins
Modification Date/Time: 2005-04-15 09:09:37
Gene Name:
Confidence Code:3
GeneProduct:putative MFS transporter
Cell Localization:()
Synonyms:PA3336
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(15) Membrane proteins
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2814
Secondary Functional Category(ies):transport of small molecules
EC Number:
Status:ACTIVE
Pathway:
Homology:
>emb|CAB90884.1| (AL939131) chloramphenicol resistance protein [Streptomyces
           coelicolor A3(2)]
          Length = 403

 Score =  268 bits (684), Expect = 5e-71
 Identities = 146/388 (37%), Positives = 219/388 (56%), Gaps = 4/388 (1%)

>emb|CAB42743.1| (AL939118) putative transmembrane efflux protein [Streptomyces
           coelicolor A3(2)]
          Length = 404

 Score =  239 bits (611), Expect = 2e-62
 Identities = 136/370 (36%), Positives = 205/370 (55%), Gaps = 2/370 (0%)
Structural Features:
COG2814, AraJ, Arabinose efflux permease 
[Carbohydrate transport and metabolism]
CD-Length = 394 residues,  96.4% aligned
Score =  195 bits (497), Expect = 7e-51
Identities = 150/381 (39%), Positives = 218/381 (57%), Gaps = 3/381 (0%)
Genomic Context:
Comment:
ReferenceID:3415
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:20562
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:32229
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:1706_cdd.html
URL:
Homologs By Global Alignment
Gene ID:1706

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
3000 PA3336_tr translation of PA3336 388 99.74 99.99 0 1915.0
93313 gb|AAG06724.1|AE004756_2 (AE004756) probable MFS transporter [Pseudomonas aeruginosa PAO1] 388 99.74 99.99 0 1915.0
93314 gb|AAQ57820.1| (AE016910) probable transmembrane efflux protein [Chromobacterium violaceum ATCC 12472] 408 46.32 62.99 38 887.0
GC ORFID: 44708How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA3336Glimmer Score:
Start: 3151601Stop: 3152767
Length: 1167
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA3336 translation of PA3336Homolog Bit Score 742.0
Other Homologs: t_PA3336 (ORF: GLIMMER)
GC ORF Sequence
ATGCCTTTGATTGTCTACGTGCTCGgTGCCGCGATCTTCGCCCTGACCACCAGCGAATACATGGTCGCCGGG
CTGATGCCGGCGCTGGCCGCcGAAttcgGCGTGTCCTtCGCCGCGATCGGCTACCTGGTCACCTTCTACGCC
GGCGCGATGGCGCTCGGCGGCCCGCTGCTGACCACCGCCCTGCTCCGCGTGCCGCGCAAGAACGCCCTGCTC
GGCCTGATCGCGCTGTTCGTGGTCGGCCAGGTCATCGGCGCCCTGGCGCCGGGCTATGCGGTGATGGTCGCG
GCGCGACTGGTCACCGCGGTCGCCGCCGCGGCCTTCTTCGGCGTGGCGCTGACCGCCTGCGCCGAACTGGTC
GAAGGCAACCAGTTCGGCCGCGCGTCGTCGCTGGTGCTCGGTGGCCTGATGGTCGGAACCGTGCTTGGCCTG
CCCGTCGCCACCTGGCTGGGCGAATGGTACGGCTGGCGCGCGAGCTTCTTCGCGGTGGCGCTGGTGGCGGTG
CTGGTCGGCCTGCTGGTGTTGCAGCTGATGCCGGCGATCCCGGGGTCGGCGGGCAGCGGCTCGCTGCGCGAG
GAACTGAAGGTGTTCAGGAACGCCCATCTATGGTGGGTCTACGCCACCAGCCTACTGCTGATCGGCGCCACC
TTCGCCGGCTTCACCTATTTCGTGCCGATCCTCACCGAGGTCAGCGGCTTCTCCGCCTCGACCGTACCGCTG
CTGCTGGTGGTCTACGGCCTGGCGACGCTGGTGGGCAACAACATCGTCGGCCGCCTGGCCGACCGCCATACC
ATCGCGGTCCTGGCCTTCGGCCTGCTGGCGGCCATCGCCGCGATGGTGGCCTTCGCCCTGTTCGGACAGGTT
CCGGCGGTAGCGGTGGCGGCGCTGGTGGTGATCGGCCTGACCGGGGTGTCGATGAACCCAGCGCTGGTGACC
CGCGGCGCACGTGTCGGCCATAACAACATGCTGGTCAACTCGGTGCACACTGCCTGCATCATGCTCGGCGTG
ATGGCCGGTTCCTGGATCGGCGGCCTGGGCATCGCCGGCGGATTCGGCCTGCAGGGCGCGCTCTGGGTCGGC
GCGGCCCTCGGGGTGCTGGCGCTGCTGACCCTGCTGCCGGAGCTGCGCTTCGCCCGCGCCCCGGTGGGCGGG
GCGCTGGGCCGCTGA