ViewGene
Locus Name:
GeneID:
Location:

GeneID:1705
TrivialName: PA14_56640
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_56640
PAO1 Ortholog Locus:PA4355
Sequence Length:1167
Protein Length:388
Start: 5045954
Stop: 5047120
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07743.1|AE004851_11 (AE004851) probable MFS transporter [Pseudomonas aeruginosa PAO1]
Identities = 388/388 (100%), Positives = 388/388 (100%)
Sequence:
ATGCCGGCGTCTCTTCTCGTCCTCGCTTTATCCGCCTTTGCCATCGGTACCACCGAATTCGTCATCATGGGC
CTGCTGCCGCAGGTCGCCGGCGACCTGCGGGTATCCATTCCCAGCGCCGGCTGGCTGATCAGCGGCTACGCC
TTCGCCGTGGCCTTCGGCGCCCCGCTGATGGCCATGGCCACCGCCCGCCTGGAACGCAAGAAAGCCCTGCTC
GCGCTGATGGGCATCTTCATCGTCGGCAACCTGCTCTGCGCGGTGGCCGCCAACTACGGCCTGCTGATGCTG
GCGCGGATCGTCACCGCGCTCTGCCATGGCGCCTTCTTCGGCATCGGCTCGGTGGTCGCCGCCAGCCTGGTG
GCGCCGAACCGCCGCGCTTCCGCCGTGGCCCTGATGTTCACCGGCCTGACCCTGGCCAACGTGCTCGGCGTG
CCGCTGGGTACCGCGCTCGGCCAGGAAGCCGGCTGGCGCGCGACCTTCTGGGTGGTGACCCTGATCGGCGTG
GTCGCCTTCGTCGGCCTGGCCAGGGTGCTGCCAAACGACCGCGAGGAAGAGAAGGTCGACCTGCGCCAGGAA
ATGTCCGCGCTGAAGAACCCGTCGCTGTGGCTGGCCCTGGGCACCACCGTGCTGTTCGCCGCCTCGATGTTC
GCCCTGTTCACCTACGTCGCGCCGCTGCTCGGCGAAGTCACCGGGGTCAGCCCGCGCGGCGTGACCTGGACC
CTGCTGCTGATCGGCGTCGGCCTGACCGTCGGCAACGTGATCGGCGGCCGCCTCGCCGACTGGCGCCTGGGC
ACCACCATGGCCGCGGTGTTCGCCGCCATGGCGCTGGTCTCGGCGCTGTTCAGCTGGACCAGCCAGGCCCTG
CTGCCGGCGGAGATCACCCTGTTCTTCTGGGCCGCCGCCGCCTTCGCCGCGGTGCCCGCGCTGCAGGTCAAC
GTGGTCCGCGTCGGGCATGCCGCGCCGAACCTGGTGGCGACCCTGAACATCGGCGCCTTCAACGTCGGCAAC
GCGCTCGGCGCCTGGGTCGGCGGCAGCGTCATCGACCACGGCCTGGGCCTGACCCGCGTGCCGCTGGCCGCC
GCCGCGCTGGCCGCGCTGGCGCTGCTGGCCACCCTGATCGCCTTTTCCGGAAACGGCCGCGCCCAGGCGCAG
CCGGTCCTCGATTGA
Translation:
MPASLLVLALSAFAIGTTEFVIMGLLPQVAGDLRVSIPSAGWLISGYAFAVAFGAPLMAMATARLERKKALL
ALMGIFIVGNLLCAVAANYGLLMLARIVTALCHGAFFGIGSVVAASLVAPNRRASAVALMFTGLTLANVLGV
PLGTALGQEAGWRATFWVVTLIGVVAFVGLARVLPNDREEEKVDLRQEMSALKNPSLWLALGTTVLFAASMF
ALFTYVAPLLGEVTGVSPRGVTWTLLLIGVGLTVGNVIGGRLADWRLGTTMAAVFAAMALVSALFSWTSQAL
LPAEITLFFWAAAAFAAVPALQVNVVRVGHAAPNLVATLNIGAFNVGNALGAWVGGSVIDHGLGLTRVPLAA
AALAALALLATLIAFSGNGRAQAQPVLD*
AnnotationID:1714GeneID:1705
AnnotatorUID: diggins
Modification Date/Time: 2005-05-02 05:05:48
Gene Name:
Confidence Code:3
GeneProduct:putative MFS transporter
Cell Localization:()
Synonyms:PA4355
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2814
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO57807.1| (AE016871) major facilitator family transporter [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 388

 Score =  572 bits (1473), Expect = e-162
 Identities = 288/385 (74%), Positives = 324/385 (84%)

>gb|AAM86736.1|AE013919_9 (AE013919) MFS transporter [Yersinia pestis KIM]
          Length = 386

 Score =  525 bits (1351), Expect = e-148
 Identities = 264/376 (70%), Positives = 310/376 (82%)








 
Structural Features:
COG2814, AraJ, Arabinose efflux permease 
[Carbohydrate transport and metabolism]
CD-Length = 394 residues,  97.5% aligned
Score =  253 bits (647), Expect = 7e-68
Identities = 172/385 (44%), Positives = 231/385 (60%), Gaps = 3/385 (0%)






   
Genomic Context:






   
Comment:


















    ReferenceID:3413




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:17106




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1705_cdd.html


    		




 
URL:

















    ReferenceID:20560




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1705
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2999
                           PA4355_tr
                           translation of PA4355
                           388
                           99.99
                           99.99
                           0
                           1917.0
     

     
     
93272
                           gb|AAG07743.1|AE004851_11
                           (AE004851) probable MFS transporter [Pseudomonas aeruginosa PAO1]
                           388
                           99.99
                           99.99
                           0
                           1917.0
     

     
     
93273
                           gb|AAO57807.1|
                           (AE016871) major facilitator family transporter [Pseudomonas syringae pv. tomato str. DC3000]
                           388
                           74.22
                           83.50
                           0
                           1471.0
     

     
     
93274
                           gb|AAM86736.1|AE013919_9
                           (AE013919) MFS transporter [Yersinia pestis KIM]
                           393
                           67.93
                           79.64
                           12
                           1352.0
     

     
     
93275
                           emb|CAC89647.1|
                           (AJ414144) putative sugar transport protein [Yersinia pestis CO92]
                           393
                           67.93
                           79.64
                           12
                           1352.0
     

     






      

          
GC ORFID: 44707How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4355Glimmer Score: 

          
Start: 4309630Stop: 4310796

          
Length: 1167


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4355 translation of PA4355Homolog Bit Score 743.0

          
Other Homologs:  psyr_15may02_Scaffold12_revised_gene1973 (ORF: BLASTX 566.0), t_PA4355 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCCGGCGTCTCTTCTCGTCCTCGCTTTATCCGCCTTTGCCATCGGTACCACCGAATTCGTCATCATGGGC 
CTGCTGCCGCAGGTCGCCGGCGACCTGCGGGTATCCATTCCCAGCGCCGGCTGGCTGATCAGCGGCTACGCC 
TTCGCCGTGGCCTTCGGCGCCCCGCTGATGGCCATGGCCACCGCCCGCCTGGAACGCAAGAAAGCCCTGCTC 
GCGCTGATGGGCATCTTCATCGTCGGCAACCTGCTCTGCGCGGTGGCCGCCAACTACGGCCTGCTGATGCTG 
GCGCGGATCGTCACCGCGCTCTGCCATGGCGCCTTCTTCGGCATCGGCTCGGTGGTCGCCGCCAGCCTGGTG 
GCGCCGAACCGCCGCGCTTCCGCCGTGGCCCTGATGTTCACCGGCCTGACCCTGGCCAACGTGCTCGGCGTG 
CCGCTGGGTACCGCGCTCGGCCAGGAAGCCGGCTGGCGCGCGACCTTCTGGGTGGTGACCCTGATCGGCGTG 
GTCGCCTTCGTCGGCCTGGCCAGGGTGCTGCCAAACGACCGCGAGGAAGAGAAGGTCGACCTGCGCCAGGAA 
ATGTCCGCGCTGAAGAACCCGTCGCTGTGGCTGGCCCTGGGCACCACCGTGCTGTTCGCCGCCTCGATGTTC 
GCCCTGTTCACCTACGTCGCGCCGCTGCTCGGCGAAGTCACCGGGGTCAGCCCGCGCGGCGTGACCTGGACC 
CTGCTGCTGATCGGCGTCGGCCTGACCGTCGGCAACGTGATCGGCGGCCGCCTCGCCGACTGGCGCCTGGGC 
ACCACCATGGCCGCGGTGTTCGCCGCCATGGCGCTGGTCTCGGCGCTGTTCAGCTGGACCAGCCAGGCCCTG 
CTGCCGGCGGAGATCACCCTGTTCTTCTGGGCCGCCGCCGCCTTCGCCGCGGTGCCCGCGCTGCAGGTCAAC 
GTGGTCCGCGTCGGGCATGCCGCGCCGAACCTGGTGGCGACCCTGAACATCGGCGCCTTCAACGTCGGCAAC 
GCGCTCGGCGCCTGGGTCGGCGGCAGCGTCATCGACCACGGCCTGGGCCTGACCCGCGTGCCGCTGGCCGCC 
GCCGCGCTGGCCGCGCTGGCGCTGCTGGCCACCCTGATCGCCTTTTCCGGAAACGGCCGCGCCCAGGCGCAG 
CCGGTCCTCGATTGA