ViewGene
Locus Name:
GeneID:
Location:

GeneID:1703
TrivialName: PA14_31540
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_31540
PAO1 Ortholog Locus:PA2552
Sequence Length:1128
Protein Length:375
Start: 2742057
Stop: 2743184
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05940.1|AE004683_4 (AE004683) probable acyl-CoA dehydrogenase [Pseudomonas aeruginosa PAO1]
Identities = 374/375 (99%), Positives = 374/375 (99%)
Sequence:
ATGATTCCCTGCGAAGAAGAGATCCAGATCCGTGACATGGCGCGGCAGTTCGCCCAGGAACGGCTGAAACCG
TTCGCCGCCGACTGGGACCGCGAGCACCGTTTCCCGGCCGAGGCGATCCGCGAGATGGCCGACCTCGGCTTC
CTCGGCATGCTGGTGCCCGAGGAATGGGGCGGCGCGCAGACCGGGCACCTGGCCTACGCCATGGCCCTCGAG
GAGATCGCCGCTGGCGACGGCGCCTGCTCGACCATCATGAGCGTGCACAACTCGGTCGGCTGCATGCCGATC
CACAAGTTCGGCAGCGCCGAGCAGAAGGAGCGCTTCCTCCGTCCGCTGGCCCAGGGTTCGATGCTCGGCGCC
TTCGCCCTGACCGAGCCGCAGGCCGGTTCCGACGCCAGCTTCCTGAAGACCCGCGCCCGCCGCGACGGTGAC
CACTACGTGCTGAACGGTGCCAAGCAGTTCATCACTTCGGGCAGCCACGCGGGGATGGTGATCGTCTTCGCG
GTCACCGATCCGGATGCCGGAAAGCGCGGCATCAGCGCGTTCATCGTGCCCACCGACACGCCCGGCTACGAG
GTGGTGCGGATCGAGGACAAGCTCGGCCAGCACGCCTCGGACACCTGCCAGCTGGCCTTCAACGACCTGCGT
ATCCCGGCCACGCTGCGCCTGGGCGAGGAGGGCGAGGGCTACCGCATTGCCCTGGCCAACCTCGAAGGCGGC
CGCATCGGCATCGCCGCCCAGGCGGTCGGCATGGCGCGCGCGGCGTTCGAGGCGGCGCGCGACTACGCCCAC
GAGCGGGAAACCTTCGGCAAGCCGATCATCGAGCACCAGGCAGTGGCCTTCCGCCTGGCCGACATGGCTACC
CGCATCGCCGTGGCGCGGCAGATGGTCCACCACGCCGCCAGCCTGCGCGAAGCCGGCCTGCCGTGTCTGACC
GAAGCCTCGATGGCCAAGCTGTTCGCCTCGGAAATGGCCGAGGAAGTCTGCTCCGCGGCGATCCAGACCCTC
GGTGGCTACGGCTATCTCAAGGACTTCCCGGTGGAGCGCATCTATCGGGACGTGCGGGTCTGCCAGATCTAC
GAGGGCACCAGCGACGTGCAGCGCCTGGTGATCGTGCGCAGCCTGTAG
Translation:
MIPCEEEIQIRDMARQFAQERLKPFAADWDREHRFPAEAIREMADLGFLGMLVPEEWGGAQTGHLAYAMALE
EIAAGDGACSTIMSVHNSVGCMPIHKFGSAEQKERFLRPLAQGSMLGAFALTEPQAGSDASFLKTRARRDGD
HYVLNGAKQFITSGSHAGMVIVFAVTDPDAGKRGISAFIVPTDTPGYEVVRIEDKLGQHASDTCQLAFNDLR
IPATLRLGEEGEGYRIALANLEGGRIGIAAQAVGMARAAFEAARDYAHERETFGKPIIEHQAVAFRLADMAT
RIAVARQMVHHAASLREAGLPCLTEASMAKLFASEMAEEVCSAAIQTLGGYGYLKDFPVERIYRDVRVCQIY
EGTSDVQRLVIVRSL*
AnnotationID:1712GeneID:1703
AnnotatorUID: diggins
Modification Date/Time: 2005-03-06 22:10:54
Gene Name:
Confidence Code:3
GeneProduct:putative acyl-CoA dehydrogenase
Cell Localization:()
Synonyms:acdA
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(12) Energy metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:cd01158,cd01162,cd00567
Secondary Functional Category(ies):putative enzyme
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN67829.1|AE016414_4 (AE016782) acyl-CoA dehydrogenase family protein [Pseudomonas
           putida KT2440]
          Length = 375

 Score =  603 bits (1556), Expect = e-172
 Identities = 294/375 (78%), Positives = 340/375 (90%)

>gb|AAL44287.1| (AE009277) acyl-CoA dehydrogenase [Agrobacterium tumefaciens str.
           C58 (U. Washington)]
          Length = 380

 Score =  567 bits (1462), Expect = e-161
 Identities = 284/375 (75%), Positives = 327/375 (87%)

>gb|AAN33641.1|AE014543_5 (AE014543) acyl-CoA dehydrogenase [Brucella suis 1330]
          Length = 375

 Score =  563 bits (1450), Expect = e-160
 Identities = 287/375 (76%), Positives = 317/375 (84%)






 
Structural Features:
cd01158, SCAD/SBCAD, Short chain acyl-CoA dehydrogenase (SCAD).
CD-Length = 373 residues,  99.5% aligned
Score =  488 bits (1258), Expect = 4e-139

cd01162, IBD, Isobutyryl-CoA dehydrogenase (IBD) catalyzes the alpha, beta-dehydrogenation 
of short branched chain acyl-CoA intermediates in valine catabolism.
CD-Length = 375 residues,  98.7% aligned
Score =  360 bits (926), Expect = 1e-100

cd00567, ACAD, Acyl-CoA dehydrogenase (ACAD).
CD-Length = 369 residues, 100.0% aligned
Score =  354 bits (910), Expect = 9e-99







   
Genomic Context:






   
Comment:


















    ReferenceID:3409




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20556




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33126




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1703_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1703
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2995
                           PA2552_tr
                           translation of PA2552
                           375
                           99.73
                           99.73
                           0
                           1919.0
     

     
     
93147
                           gb|AAG05940.1|AE004683_4
                           (AE004683) probable acyl-CoA dehydrogenase [Pseudomonas aeruginosa PAO1]
                           375
                           99.73
                           99.73
                           0
                           1919.0
     

     
     
93148
                           gb|AAK18172.1|AF290950_4
                           (AF290950) FadFx [Pseudomonas putida]
                           375
                           79.20
                           89.60
                           0
                           1562.0
     

     
     
93150
                           emb|CAE27746.1|
                           (BX572600) acyl-CoA dehydrogenase [Rhodopseudomonas palustris CGA009]
                           375
                           78.93
                           87.20
                           0
                           1507.0
     

     
     
93149
                           gb|AAN67829.1|AE016414_4
                           (AE016782) acyl-CoA dehydrogenase family protein [Pseudomonas putida KT2440]
                           375
                           78.40
                           90.66
                           0
                           1556.0
     

     






      

          
GC ORFID: 44705How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2552Glimmer Score: 

          
Start: 2211869Stop: 2210742

          
Length: 1128


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA2552 translation of PA2552Homolog Bit Score 743.0

          
Other Homologs:  psyr_15may02_Scaffold1_revised_gene624 (ORF: BLASTX 436.0), t_PA0746 (ORF: BLASTX 313.0), t_PA2552 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGATTCCCTGCGAAGAAGAGATCCAGATCCGTGACATGGCGCGGCAGTTCGCCCAGGAACGGCTGAAACCG 
TTCGCCGCCGACTGGGACCGCGAGCACCGTTTCCCGGCCGAGGCGATCCGCGAGATGGCCGACCTCGGCTTC 
CTCGGCATGCTGGTGCCCGAGGAATGGGGCGGCGCGCAGACCGGGCACCTGGCCTACGCCATGGCCCTCGAG 
GAGATCGCCGCTGGCGACGGCGCCTGCTCGACCATCATGAGCGTGCACAACTCGGTCGGCTGCATGCCGATC 
CACAAGTTCGGCAGCGCCGAGCAGAAGGAGCGCTTCCTCCGTCCGCTGGCCCAGGGTTCGATGCTCGGCGCC 
TTCGCCCTGACCGAGCCGCAGGCCGGTTCCGACGCCAGCTTCCTGAAGACCCGCGCCCGCCGCGACGGTGAC 
CACTACGTGCTGAACGGTGCCAAGCAGTTCATCACTTCGGGCAGCCACGCGGGGATGGTGATCGTCTTCGCG 
GTCACCGATCCGGATGCCGGAAAGCGCGGCATCAGCGCGTTCATCGTGCCCACCGACACGCCCGGCTACGAG 
GTGGTGCGGATCGAGGACAAGCTCGGCCAGCACGCCTCGGACACCTGCCAGCTGGCCTTCAACGACCTGCGT 
ATCCCGGCCACGCTGCGCCTGGGCGAGGAGGGCGAGGGCTACCGCATTGCCCTGGCCAACCTCGAAGGCGGC 
CGCATCGGCATCGCCGCCCAGGCGGTCGGCATGGCGCGCGCGGCGTTCGAGGCGGCGCGCGACTACGCCCAC 
GAGCGGGAAACCTTCGGCAAGCCGATCATCGAGCACCAGGCAGTGGCCTTCCGCCTGGCCGACATGGCTACC 
CGCATCGCCGTGGCGCGGCAGATGGTCCACCACGCCGCCAGCCTGCGCGAAGCCGGCCTGCCGTGTCTGACC 
GAAGCCTCGATGGCCAAGCTGTTCGCCTCGGAAATGGCCGAGGAAGTCTGCTCCGCGGCGATCCAGACCCTC 
GGTGGCTACGGCTATCTCAAGGACTTCCCGGTGGAGCGCATCTATCGGGACGTGCGGGTCTGCCAGATCTAC 
GAGGGCACCAGCGACGTGCAGCGCCTGGTGATCGTGCGCAGCCTGTAG