ViewGene
Locus Name:
GeneID:
Location:

GeneID:1702
TrivialName: PA14_34250
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_34250
PAO1 Ortholog Locus:PA2352
Sequence Length:1128
Protein Length:375
Start: 3045901
Stop: 3044774
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05740.1|AE004661_7 (AE004661) probable glycerophosphoryl diester phosphodiesterase [Pseudomonas aeruginosa PAO1]
Identities = 371/375 (98%), Positives = 372/375 (99%)
Sequence:
ATGCGGCAAAGATTCTGGCAAGGAACATTCAAGACCCTGGGCCTCCTCGGCCTGACGGCGGGGCTCGCCGCC
CAGGCCGCGGAGCCGTCCGGCAAGGCCCTCAGCGCCGCCGCCGGCGTGCCCTGGCCGGCGGTCATCGCCCAC
CGCGGCGCCTCGTACGACGCCCCCGAGGAAACCGCCGCGGCCTACCTACTGGCCCGCGACCTCGGCGCCGAC
TACCTGGAAGCCGACGTGCAGCGCAGCCGCGACGGCGTACTGGTCGCCCTCCACGACGACACCCTGGAGCGC
ACCACCGACGTCGCCGAGGTCTTCCCGGGACGCGCCAAGGACCCGGTGAGCAGCTTCACTCTCGCCGAACTC
AAGCGCCTGGACGCCGGCTCCTGGTTCAATCGCGCCTTCCCCGAGCGCGCCCGGCCCGGCTTCGTCGGCCTG
CGCATCCTCACCCTCGACGAGATGCTCGACATCGCCGAGGGCGGCGCCAACAAGCCGGGCCTGTACCTGGAG
ACCAAGGTACCGGCGCAATTCCCCGGCATCGAAGACGACCTGCGCAAGCTGCTGGAACGCCGCGGCTGGCTG
CAACCCCGCGAGCGCGCCGCCGCCGGGCATGTCGACGTGGCCCACGGCAATGGCCGGGTGATCCTGCAGACC
TTCGAGAAGAGCAGCCTGGAACTGCTGCAAGAAAGCATGCCGCAAGTGCCGAAGATTCTCCTGCTGTGGCTC
GGCGACGGTTACCTGGAAGCCCGTTCGCCAGTGACCTTCAAGGAATCCGGGGAAACCGACAAGGCGGCCTTC
TACGCCAGGCAGGAAGTGAAGTCCGAAGCCGAGTTCGGCGCCTGGCTGGACTGGGCCAAGGCCCACGGCGCG
CTGGGCACCGGGCCCTCGGCGACCCTCAGCGAACGCGGCGAACAGAGCTACGCCGACCTGGTGAAACCCTGG
ATGAACCGCATGACCCACGCGCGCGGGTTGTTCATCCATGCCTACTCGGTGGACTCGGAGGAAGACTTCAAG
GCCCTAGGTGCGGCCGGCGTCGACGGTTTCTTCACCAACCGCACCTCGGAACTGCTGAAGTTCCAGGGCCGC
CCGGCGGCGCAAGACATGGACGCGCTGCTGCGCCGGCACGGCTACTGA
Translation:
MRQRFWQGTFKTLGLLGLTAGLAAQAAEPSGKALSAAAGVPWPAVIAHRGASYDAPEETAAAYLLARDLGAD
YLEADVQRSRDGVLVALHDDTLERTTDVAEVFPGRAKDPVSSFTLAELKRLDAGSWFNRAFPERARPGFVGL
RILTLDEMLDIAEGGANKPGLYLETKVPAQFPGIEDDLRKLLERRGWLQPRERAAAGHVDVAHGNGRVILQT
FEKSSLELLQESMPQVPKILLLWLGDGYLEARSPVTFKESGETDKAAFYARQEVKSEAEFGAWLDWAKAHGA
LGTGPSATLSERGEQSYADLVKPWMNRMTHARGLFIHAYSVDSEEDFKALGAAGVDGFFTNRTSELLKFQGR
PAAQDMDALLRRHGY*
AnnotationID:1711GeneID:1702
AnnotatorUID: diggins
Modification Date/Time: 2005-03-04 16:04:44
Gene Name:
Confidence Code:3
GeneProduct:putative glycerophosphoryl diester phosphodiesterase
Cell Localization:()
Synonyms:PA2352
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(12) Energy metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0584,pfam03009
Secondary Functional Category(ies):putative enzyme
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO56936.1| (AE016868) glycerophosphoryl diester phosphodiesterase [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 372

 Score =  516 bits (1328), Expect = e-145
 Identities = 245/360 (68%), Positives = 301/360 (83%), Gaps = 1/360 (0%)








 
Structural Features:
COG0584, UgpQ, Glycerophosphoryl diester phosphodiesterase 
[Energy production and conversion]
CD-Length = 257 residues,  98.8% aligned
Score =  152 bits (385), Expect = 6e-38
Identities = 103/321 (32%), Positives = 140/321 (43%), Gaps = 67/321 (20%)

pfam03009, GDPD, Glycerophosphoryl diester phosphodiesterase family.
CD-Length = 240 residues,  98.8% aligned
Score =  130 bits (329), Expect = 2e-31
Identities = 87/307 (28%), Positives = 121/307 (39%), Gaps = 74/307 (24%)






   
Genomic Context:






   
Comment:


















    ReferenceID:3407




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20554




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32900




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1702_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1702
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2994
                           PA2352_tr
                           translation of PA2352
                           375
                           98.93
                           99.20
                           0
                           1919.0
     

     
     
93144
                           gb|AAG05740.1|AE004661_7
                           (AE004661) probable glycerophosphoryl diester phosphodiesterase [Pseudomonas aeruginosa PAO1]
                           375
                           98.93
                           99.20
                           0
                           1919.0
     

     
     
93145
                           gb|AAO56936.1|
                           (AE016868) glycerophosphoryl diester phosphodiesterase [Pseudomonas syringae pv. tomato str. DC3000]
                           382
                           65.18
                           80.10
                           17
                           1328.0
     

     
     
93146
                           emb|CAC42742.1|
                           (AL939111) putative secreted hydrolase [Streptomyces coelicolor A3(2)]
                           378
                           32.53
                           44.44
                           92
                           400.0
     

     






      

          
GC ORFID: 44704How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2352Glimmer Score: 

          
Start: 1908015Stop: 1909142

          
Length: 1128


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2352 translation of PA2352Homolog Bit Score 743.0

          
Other Homologs:  psyr_15may02_Scaffold1_revised_gene1287 (ORF: BLASTX 163.0), t_PA2352 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCGGCAAAGATTCTGGCAAGGAACATTCAAGACCCTGGGCCTCCTCGGCCTGACGGCGGGGCTCGCCGCC 
CAGGCCGCGGAGCCGTCCGGCAAGGCCCTCAGCGCCGCCGCCGGCGTGCCCTGGCCGGCGGTCATCGCCCAC 
CGCGGCGCCTCGTACGACGCCCCCGAGGAAACCGCCGCGGCCTACCTACTGGCCCGCGACCTCGGCGCCGAC 
TACCTGGAAGCCGACGTGCAGCGCAGCCGCGACGGCGTACTGGTCGCCCTCCACGACGACACCCTGGAGCGC 
ACCACCGACGTCGCCGAGGTCTTCCCGGGACGCGCCAAGGACCCGGTGAGCAGCTTCACTCTCGCCGAACTC 
AAGCGCCTGGACGCCGGCTCCTGGTTCAATCGCGCCTTCCCCGAGCGCGCCCGGCCCGGCTTCGTCGGCCTG 
CGCATCCTCACCCTCGACGAGATGCTCGACATCGCCGAGGGCGGCGCCAACAAGCCGGGCCTGTACCTGGAG 
ACCAAGGTACCGGCGCAATTCCCCGGCATCGAAGACGACCTGCGCAAGCTGCTGGAACGCCGCGGCTGGCTG 
CAACCCCGCGAGCGCGCCGCCGCCGGGCATGTCGACGTGGCCCACGGCAATGGCCGGGTGATCCTGCAGACC 
TTCGAGAAGAGCAGCCTGGAACTGCTGCAAGAAAGCATGCCGCAAGTGCCGAAGATTCTCCTGCTGTGGCTC 
GGCGACGGTTACCTGGAAGCCCGTTCGCCAGTGACCTTCAAGGAATCCGGGGAAACCGACAAGGCGGCCTTC 
TACGCCAGGCAGGAAGTGAAGTCCGAAGCCGAGTTCGGCGCCTGGCTGGACTGGGCCAAGGCCCACGGCGCG 
CTGGGCACCGGGCCCTCGGCGACCCTCAGCGAACGCGGCGAACAGAGCTACGCCGACCTGGTGAAACCCTGG 
ATGAACCGCATGACCCACGCGCGCGGGTTGTTCATCCATGCCTACTCGGTGGACTCGGAGGAAGACTTCAAG 
GCCCTAGGTGCGGCCGGCGTCGACGGTTTCTTCACCAACCGCACCTCGGAACTGCTGAAGTTCCAGGGCCGC 
CCGGCGGCGCAAGACATGGACGCGCTGCTGCGCCGGCACGGCTACTGA