ViewGene
Locus Name:
GeneID:
Location:

GeneID:1701
TrivialName: PA14_65920
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_65920
PAO1 Ortholog Locus:PA4985
Sequence Length:1092
Protein Length:363
Start: 5872372
Stop: 5871281
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08370.1|AE004911_5 (AE004911) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 362/363 (99%), Positives = 362/363 (99%)
Sequence:
ATGAACCGTTCCTTTCCATTGCGCCGCGCGGCCAGCGCCCGTCCGCATCCGGTTTTTCCTTGCCGCGTCCTG
CTCGGCGCCGTCCTGCTGGCGTTCGGCGGCCTCGCGCCTGTCCAGGCCGATGATGGCCTGGTGGTGGTCGGC
TACGGCGGCGCCGGACAGAAGGCCCAGGAGGTGGCGTTCTTCCAGCCGTTCACGCAGCAGACCGGGATTCCC
GTGGTGCAGAGCGAGTACAACGGCGAGATGGCCCGGATCAAGGTGATGGCCGACACCGGTCACGCCGACTGG
GACCTGGTCCAGGTCGAGGGGCCGGACCTGGCGCGCGGTTGCGACGACGGCCTGTTCGAGCGTCTGGACTGG
CAGGCCATCGGCGGCAAGCAGCAGTTGATCGCCAATGCCGCCCAGGAATGCGGTTCCGCCGCGCTGGTCTGG
GGCGTGGCGATCGGCTACGACGCCGACCGGCTGCAACAGCCGCCGGCGTCCTGGGCCGACTTCTGGGACGTC
CAGCGCTTCCCCGGCAAGCGCGGCCTGCGCAAGCGGGCGATCTACAACCTGGAGTTCGCCCTGCTCGCCGAC
GGCGTGCCACGCGAGCAGGTCTATCCGCTGCTGGCGACCCGCGCCGGTGCCGACCGTGCCTTCGCCAAGCTG
GGCCAGCTCAAGCCCTACATCCAGTGGTGGGAGGCGGGAGCGCAGCCGGCGCAGTGGCTGGCCGCCGGCGAC
GTGGTGATGACGTCCACCTACACCGGGCGCATCGCCGACGCCCACCGCGCGGGGCGCAACCTGGCCCTGGTA
TGGCCGGGCAGCCTGTACGGCATGGACTACTGGGCGGTGGTCAAGGGTTCGAAGCGCGGCGCCGAGGCGCGT
CGCTTCATCGCCTTCGCCAATGCCCCGGATGCCCAGGTGCGCTACGTCGAGAACATTCCCTACGGGCCGACC
AACCGCCAGGCCGCCCAGCGCCTGCCCGCGCAACTGGCGAGCTGGGTGCCGACCGCGCCGGCGAACCTGGAG
CAGGGCCTGGCGATGGACGACGAATTCTGGGTCGAGCATGGCGAGGAGCTGGAGGAGCGCTTCAACGCCTGG
GCCAGCCAGTGA
Translation:
MNRSFPLRRAASARPHPVFPCRVLLGAVLLAFGGLAPVQADDGLVVVGYGGAGQKAQEVAFFQPFTQQTGIP
VVQSEYNGEMARIKVMADTGHADWDLVQVEGPDLARGCDDGLFERLDWQAIGGKQQLIANAAQECGSAALVW
GVAIGYDADRLQQPPASWADFWDVQRFPGKRGLRKRAIYNLEFALLADGVPREQVYPLLATRAGADRAFAKL
GQLKPYIQWWEAGAQPAQWLAAGDVVMTSTYTGRIADAHRAGRNLALVWPGSLYGMDYWAVVKGSKRGAEAR
RFIAFANAPDAQVRYVENIPYGPTNRQAAQRLPAQLASWVPTAPANLEQGLAMDDEFWVEHGEELEERFNAW
ASQ*
AnnotationID:1710GeneID:1701
AnnotatorUID: diggins
Modification Date/Time: 2005-03-14 07:07:16
Gene Name:
Confidence Code:3
GeneProduct:putative extracellular solute-binding protein
Cell Localization:()
Synonyms:PA4985
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0687
Secondary Functional Category(ies):amino acid transport and metabolism
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN68478.1|AE016480_5 (AE016784) extracellular solute-binding protein, PotD/PotF family
           [Pseudomonas putida KT2440]
          Length = 366

 Score =  498 bits (1282), Expect = e-140
 Identities = 238/346 (68%), Positives = 283/346 (81%), Gaps = 1/346 (0%)

>emb|CAD15435.1| (AL646066) PUTATIVE LIPOPROTEIN SIGNAL PEPTIDE [Ralstonia
           solanacearum]
          Length = 346

 Score =  361 bits (927), Expect = 3e-99
 Identities = 167/320 (52%), Positives = 223/320 (69%)

>gb|AAM84963.1|AE013742_5 (AE013742) putative substrate-binding protein of ABC transporter
           [Yersinia pestis KIM]
          Length = 342

 Score =  360 bits (924), Expect = 7e-99
 Identities = 166/320 (51%), Positives = 218/320 (68%)






 
Structural Features:
COG0687, PotD, Spermidine/putrescine-binding periplasmic protein 
[Amino acid transport and metabolism]
CD-Length = 363 residues,  97.0% aligned
Score =  194 bits (494), Expect = 1e-50
Identities = 96/371 (25%), Positives = 146/371 (39%), Gaps = 51/371 (13%)








   
Genomic Context:






   
Comment:


















    ReferenceID:3405




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20552




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:35089




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1701_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1701
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2990
                           PA4985_tr
                           translation of PA4985
                           363
                           99.72
                           99.72
                           0
                           1921.0
     

     
     
93129
                           gb|AAG08370.1|AE004911_5
                           (AE004911) hypothetical protein PA4985 [Pseudomonas aeruginosa PAO1]
                           363
                           99.72
                           99.72
                           0
                           1921.0
     

     
     
93130
                           gb|AAN68478.1|AE016480_5
                           (AE016784) extracellular solute-binding protein, PotD/PotF family [Pseudomonas putida KT2440]
                           367
                           65.12
                           77.92
                           5
                           1280.0
     

     
     
2991
                           PA0222_tr
                           translation of PA0222
                           363
                           53.71
                           65.84
                           11
                           999.0
     

     
     
93131
                           gb|AAG03611.1|AE004460_4
                           (AE004460) hypothetical protein PA0222 [Pseudomonas aeruginosa PAO1]
                           363
                           53.71
                           65.84
                           11
                           999.0
     

     






      

          
GC ORFID: 44703How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4985Glimmer Score: 

          
Start: 5136055Stop: 5134964

          
Length: 1092


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4985 translation of PA4985Homolog Bit Score 744.0

          
Other Homologs:  t_PA0222 (ORF: BLASTX 390.0), t_PA0604 (ORF: BLASTX 360.0), psyr_15may02_Scaffold13_revised_gene2135 (ORF: BLASTX 345.0), t_PA0602 (ORF: BLASTX 336.0), t_PA4985 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAACCGTTCCTTTCCATTGCGCCGCGCGGCCAGCGCCCGTCCGCATCCGGTTTTTCCTTGCCGCGTCCTG 
CTCGGCGCCGTCCTGCTGGCGTTCGGCGGCCTCGCGCCTGTCCAGGCCGATGATGGCCTGGTGGTGGTCGGC 
TACGGCGGCGCCGGACAGAAGGCCCAGGAGGTGGCGTTCTTCCAGCCGTTCACGCAGCAGACCGGGATTCCC 
GTGGTGCAGAGCGAGTACAACGGCGAGATGGCCCGGATCAAGGTGATGGCCGACACCGGTCACGCCGACTGG 
GACCTGGTCCAGGTCGAGGGGCCGGACCTGGCGCGCGGTTGCGACGACGGCCTGTTCGAGCGTCTGGACTGG 
CAGGCCATCGGCGGCAAGCAGCAGTTGATCGCCAATGCCGCCCAGGAATGCGGTTCCGCCGCGCTGGTCTGG 
GGCGTGGCGATCGGCTACGACGCCGACCGGCTGCAACAGCCGCCGGCGTCCTGGGCCGACTTCTGGGACGTC 
CAGCGCTTCCCCGGCAAGCGCGGCCTGCGCAAGCGGGCGATCTACAACCTGGAGTTCGCCCTGCTCGCCGAC 
GGCGTGCCACGCGAGCAGGTCTATCCGCTGCTGGCGACCCGCGCCGGTGCCGACCGTGCCTTCGCCAAGCTG 
GGCCAGCTCAAGCCCTACATCCAGTGGTGGGAGGCGGGAGCGCAGCCGGCGCAGTGGCTGGCCGCCGGCGAC 
GTGGTGATGACGTCCACCTACACCGGGCGCATCGCCGACGCCCACCGCGCGGGGCGCAACCTGGCCCTGGTA 
TGGCCGGGCAGCCTGTACGGCATGGACTACTGGGCGGTGGTCAAGGGTTCGAAGCGCGGCGCCGAGGCGCGT 
CGCTTCATCGCCTTCGCCAATGCCCCGGATGCCCAGGTGCGCTACGTCGAGAACATTCCCTACGGGCCGACC 
AACCGCCAGGCCGCCCAGCGCCTGCCCGCGCAACTGGCGAGCTGGGTGCCGACCGCGCCGGCGAACCTGGAG 
CAGGGCCTGGCGATGGACGACGAATTCTGGGTCGAGCATGGCGAGGAGCTGGAGGAGCGCTTCAACGCCTGG 
GCCAGCCAGTGA