ViewGene

Locus Name:
GeneID:
Location:

GeneID:170
TrivialName: PA14_36840
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_36840
PAO1 Ortholog Locus:PA2144
Sequence Length:2439
Protein Length:812
Start: 3285030
Stop: 3282592
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05532.1|AE004641_11 (AE004641) glycogen phosphorylase [Pseudomonas aeruginosa PAO1]
Identities = 811/812 (99%), Positives = 811/812 (99%)
Sequence:
ATGCCCGACAGCCAAGACCAGACCCCGAGCACGGTCCAGACCCTGAAAGCCAGCATCCTCGCCAAGCTGCGC
TACAGCGTCGGCCGCGACCCATCCACCGCCTGCCCGCACGACTGGTTCGAAGCGGTGGCCCTGGCGGTGCGC
GACCACATCATCGACCACTGGGAGGAGGCCACCCCGCAAGGCGAAGCGCCCGCGCGCAAGCGGGTCTACTAC
CTGTCCCTGGAGTTCCTCATCGGTCGCCTGTTGCTGGACAACCTCGGCAACCTCGGGCTGCTCGAGGAAACC
CGCCAGGCCCTTGCCGAGCTGGGCGTCGACCTGCAGCGGATCGTTGCCCTGGAGCCGGACGCGGCGCTCGGC
AACGGCGGCCTCGGACGCCTGGCGGCATGCTTCATGGAAAGCATGGCCAGCCTCGACATTCCCGCGCATGGC
TATGGCATCCGCTACGAGCATGGCCTGTTCCGCCAGGTGCTGACCGACGGCTGGCAGCAGGAGCAGACCGAG
ACCTGGCTGGATTTCGGCAATCCCTGGGAGTTCGAACGACCCGAGGTCAGCTACTACATCGACTTCGGCGGC
AGCGTGCAGGTCGACAGCGAGCACAGTGGCCGTGCCATCTGGCGGCCGGACGAGCGGATCCGGGCGATCGCC
TACGACACGCCGATCGTCGGCTGGCGGCGTGCCAGCGTCAACACCCTGCGCCTGTGGCGCGCCCGCGCCGAG
GAAGACCTGCAACTGGACCGTTTCAACGCCGGCGACCATATCGGCGCGGTGGTCGACGTGGTCAAGGCGGAG
AGCATCTCGCGGGTGCTGTATCCGGCCGACAGCACCGAGGCCGGTCAGGAACTGCGCCTGCGCCAGGAGTAC
TTCTTCGTCTCAGCCTCGCTGCAGGACCTGCTCGACCGCCACCTGCGCCATCATCACGACCTGCGTAGCCTG
CCGGAACAGGTGGCGATCCAGCTCAACGACACCCACCCGGCGATCGCCGTCGCCGAGTTGATGCGGCAACTG
GTGGACGTGCACCAACTGGCCTGGCCGGACGCCTGGGCGCTGAGCGTGGCGACCCTGTCCTACACCAACCAC
ACGCTGCTCCCGGAAGCCCTGGAATCCTGGCCGGTGGCGCTGATGGAGCGCCTGCTGCCGCGCCACATGCAG
ATCATCTACCTGATCAACGCCTTCCATATAGACGCGCTGCGCGCCCAGGACATCCACGACTTCGACCTGTTG
CGTTCGGTCAGCCTGATCGAGGAGGGCCACGGCCGGCGGGTGCGCATGGGCAACCTGGCGTTCCTCGGTTCG
CACCAGATCAACGGGGTATCGGCCTTGCACACCGAGCTGATGCGCGAAACCGTGTTCCATGACCTGCATCGC
CTCTACCCGCAGCGCATCAGCAACAAGACCAACGGCGTGTCGTTCCGCCGCTGGCTGTTCCAGGCCAACCCG
GGGTTGACCGAGCTGCTGGTGGAGACCCTCGGCGCCGACCTGCTGGACACCCCGGAACGGCGCCTGCCGGAC
CTCGAGGAGCACGTCGAGGACGCCAGGCTGCGGGCGCGCTTCGCCGAGCAGCGCCGGCAGAACAAGACCGCC
CTGGCGCGCCTGGTGCTGGACAGCCTCGGCGTGGCGATCGAACCGGAAGCGCTGTTCGATGTGCATATCAAG
CGTATCCACGAATACAAGCGGCAGTTGCTCAACCTGCTGCACACCGTGGCGCTGTACCAGGAGATCCGCAAC
GACCCGACCGCCGACCGCGTGCCGCGGGTGAAGATCTTCGCCGGCAAGGCTGCCGCCAGCTACCACCAGGCC
AAGCTGATCATCAAGCTGGCCAACGACATCGCCCGCACCATCAACGACGACCCCACCGTGCGCGGCCTGCTC
AAGCTGGTGTTCCTGCCCAACTACAACGTCAGCCTGGCCGAGGCGATCATTCCCGCGGCGGACCTCTCCGAG
CAGATTTCCACCGCCGGGCTCGAGGCCTCCGGCACCAGCAACATGAAGTTCGCCCTCAACGGCGCGCTGACC
ATCGGCACCCTGGACGGCGCCAACGTCGAGATGAGCCAGCGGATCGGCCTGGAACACATGTTCATCTTCGGC
CTCAGCGCCCAGCAGGTGGAGCAGCGCCGGCAAGCCGGGGAGCTGGAGATGGGCGGGGTGATCGCGGCCTCG
CCGCGGCTGGAGGAAGCCCTGGAGGCGATCCGCAGTGGGCTGTTCTCGGCCGACGACCGCAGCCGCTACGAA
GGGCTGGTGGACGGCCTGGTGCACGACGACCGCTTCATGCTCTGCGCCGACTTCGAGGCCTACTGGCATGCG
CAGTGCCGGGTCGAGGAAGTCTGGCGCGAGCCCGATCGCTGGTGGCGCTCGGCGTTGCTCAACGTGGCGCGG
ATCGGCTGGTTCAGCGCCGACCGGACGATCAGCGAATACGCCCGGGATATCTGGAAGCTATGA
Translation:
MPDSQDQTPSTVQTLKASILAKLRYSVGRDPSTACPHDWFEAVALAVRDHIIDHWEEATPQGEAPARKRVYY
LSLEFLIGRLLLDNLGNLGLLEETRQALAELGVDLQRIVALEPDAALGNGGLGRLAACFMESMASLDIPAHG
YGIRYEHGLFRQVLTDGWQQEQTETWLDFGNPWEFERPEVSYYIDFGGSVQVDSEHSGRAIWRPDERIRAIA
YDTPIVGWRRASVNTLRLWRARAEEDLQLDRFNAGDHIGAVVDVVKAESISRVLYPADSTEAGQELRLRQEY
FFVSASLQDLLDRHLRHHHDLRSLPEQVAIQLNDTHPAIAVAELMRQLVDVHQLAWPDAWALSVATLSYTNH
TLLPEALESWPVALMERLLPRHMQIIYLINAFHIDALRAQDIHDFDLLRSVSLIEEGHGRRVRMGNLAFLGS
HQINGVSALHTELMRETVFHDLHRLYPQRISNKTNGVSFRRWLFQANPGLTELLVETLGADLLDTPERRLPD
LEEHVEDARLRARFAEQRRQNKTALARLVLDSLGVAIEPEALFDVHIKRIHEYKRQLLNLLHTVALYQEIRN
DPTADRVPRVKIFAGKAAASYHQAKLIIKLANDIARTINDDPTVRGLLKLVFLPNYNVSLAEAIIPAADLSE
QISTAGLEASGTSNMKFALNGALTIGTLDGANVEMSQRIGLEHMFIFGLSAQQVEQRRQAGELEMGGVIAAS
PRLEEALEAIRSGLFSADDRSRYEGLVDGLVHDDRFMLCADFEAYWHAQCRVEEVWREPDRWWRSALLNVAR
IGWFSADRTISEYARDIWKL*
AnnotationID:180GeneID:170
AnnotatorUID: diggins
Modification Date/Time: 2005-04-28 18:06:02
Gene Name:glgP
Confidence Code:2
GeneProduct:glycogen phosphorylase
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(7) Cell wall / LPS / capsule
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam00343,COG0058
Secondary Functional Category(ies):carbohydrate transport and metabolism
EC Number:2.4.1.1
Status:ACTIVE
Pathway:
Homology:
>gb|AAN70606.1|AE016703_6 (AE016793) glycogen phosphorylase [Pseudomonas putida KT2440]
          Length = 816

 Score = 1169 bits (3025), Expect = 0.0
 Identities = 572/802 (71%), Positives = 669/802 (83%), Gaps = 2/802 (0%)

>gb|AAL22394.1| (AE008863) glycogen phosphorylase [Salmonella typhimurium LT2]
          Length = 815

 Score =  780 bits (2014), Expect = 0.0
 Identities = 389/803 (48%), Positives = 555/803 (69%), Gaps = 6/803 (0%)

>gb|AAN82653.1|AE016768_71 (AE016768) Glycogen phosphorylase [Escherichia coli CFT073]
          Length = 815

 Score =  770 bits (1987), Expect = 0.0
 Identities = 385/803 (47%), Positives = 548/803 (68%), Gaps = 6/803 (0%)
Structural Features:
pfam00343, Phosphorylase, Carbohydrate phosphorylase.
CD-Length = 715 residues,  99.7% aligned
Score =  899 bits (2325), Expect = 0.0
Identities = 371/716 (51%), Positives = 507/716 (70%), Gaps = 5/716 (0%)

COG0058, GlgP, Glucan phosphorylase [Carbohydrate transport and metabolism]
CD-Length = 750 residues,  99.2% aligned
Score =  849 bits (2196), Expect = 0.0
Identities = 365/807 (45%), Positives = 481/807 (59%), Gaps = 68/807 (8%)
Genomic Context:
Comment:
ReferenceID:343
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:17485
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:32581
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:170_cdd.html
URL:
ReferenceID:34423
Author/Investigator(s): Choi YL, Kawamukai M, Utsumi R, Sakai H, Komano T.
Title: Molecular cloning and sequencing of the glycogen phosphorylase gene from Escherichia coli.
PubMed: 2645169
MedLine:
Source:
FEBS Lett. 1989 Jan 30;243(2):193-8.
Reference Type:Journal
Data:
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=2645169
ReferenceID:34424
Author/Investigator(s): Yu F, Jen Y, Takeuchi E, Inouye M, Nakayama H, Tagaya M, Fukui T.
Title: Alpha-glucan phosphorylase from Escherichia coli. Cloning of the gene, and purification and characterization of the protein.
PubMed: 3047129
MedLine:
Source:
J Biol Chem. 1988 Sep 25;263(27):13706-11.
Reference Type:Journal
Data:
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=3047129
ReferenceID:34425
Author/Investigator(s): Igarashi RY, Meyer CR.
Title: Cloning and sequencing of glycogen metabolism genes from Rhodobacter sphaeroides 2.4.1. Expression and characterization of recombinant ADP-glucose pyrophosphorylase.
PubMed: 10729189
MedLine:
Source:
Arch Biochem Biophys. 2000 Apr 1;376(1):47-58.
Reference Type:Journal
Data:
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=10729189
ReferenceID:34426
Author/Investigator(s): Ugalde JE, Lepek V, Uttaro A, Estrella J, Iglesias A, Ugalde RA.
Title: Gene organization and transcription analysis of the Agrobacterium tumefaciens glycogen (glg) operon: two transcripts for the single phosphoglucomutase gene.
PubMed: 9851999
MedLine:
Source:
J Bacteriol. 1998 Dec;180(24):6557-64.
Reference Type:Journal
Data:
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=9851999
Homologs By Global Alignment
Gene ID:170

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
305 PA2144_tr translation of PA2144 812 99.87 99.87 0 4196.0
19334 gb|AAG05532.1|AE004641_11 (AE004641) glycogen phosphorylase [Pseudomonas aeruginosa PAO1] 812 99.87 99.87 0 4196.0
19335 gb|AAN70606.1|AE016703_6 (AE016793) glycogen phosphorylase [Pseudomonas putida KT2440] 819 70.08 82.29 10 3027.0
19336 gb|AAO58591.1| (AE016874) glycogen phosphorylase [Pseudomonas syringae pv. tomato str. DC3000] 820 69.75 81.09 12 3009.0
19340 emb|CAC47422.1| (AL591792) PROBABLE GLYCOGEN PHOSPHORYLASE PROTEIN [Sinorhizobium meliloti] 828 60.62 73.67 23 2544.0
GC ORFID: 43172How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA2144Glimmer Score:
Start: 1668884Stop: 1671322
Length: 2439
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA2144 translation of PA2144Homolog Bit Score 1620.0
Other Homologs: psyr_15may02_Scaffold2_revised_gene3809 (ORF: BLASTX 1168.0), t_PA2144 (ORF: GLIMMER)
GC ORF Sequence
ATGCCCGACAGCCAAGACCAGACCCCGAGCACGGTCCAGACCCTGAAAGCCAGCATCCTCGCCAAGCTGCGC
TACAGCGTCGGCCGCGACCCATCCACCGCCTGCCCGCACGACTGGTTCGAAGCGGTGGCCCTGGCGGTGCGC
GACCACATCATCGACCACTGGGAGGAGGCCACCCCGCAAGGCGAAGCGCCCGCGCGCAAGCGGGTCTACTAC
CTGTCCCTGGAGTTCCTCATCGGTCGCCTGTTGCTGGACAACCTCGGCAACCTCGGGCTGCTCGAGGAAACC
CGCCAGGCCCTTGCCGAGCTGGGCGTCGACCTGCAGCGGATCGTTGCCCTGGAGCCGGACGCGGCGCTCGGC
AACGGCGGCCTCGGACGCCTGGCGGCATGCTTCATGGAAAGCATGGCCAGCCTCGACATTCCCGCGCATGGC
TATGGCATCCGCTACGAGCATGGCCTGTTCCGCCAGGTGCTGACCGACGGCTGGCAGCAGGAGCAGACCGAG
ACCTGGCTGGATTTCGGCAATCCCTGGGAGTTCGAACGACCCGAGGTCAGCTACTACATCGACTTCGGCGGC
AGCGTGCAGGTCGACAGCGAGCACAGTGGCCGTGCCATCTGGCGGCCGGACGAGCGGATCCGGGCGATCGCC
TACGACACGCCGATCGTCGGCTGGCGGCGTGCCAGCGTCAACACCCTGCGCCTGTGGCGCGCCCGCGCCGAG
GAAGACCTGCAACTGGACCGTTTCAACGCCGGCGACCATATCGGCGCGGTGGTCGACGTGGTCAAGGCGGAG
AGCATCTCGCGGGTGCTGTATCCGGCCGACAGCACCGAGGCCGGTCAGGAACTGCGCCTGCGCCAGGAGTAC
TTCTTCGTCTCAGCCTCGCTGCAGGACCTGCTCGACCGCCACCTGCGCCATCATCACGACCTGCGTAGCCTG
CCGGAACAGGTGGCGATCCAGCTCAACGACACCCACCCGGCGATCGCCGTCGCCGAGTTGATGCGGCAACTG
GTGGACGTGCACCAACTGGCCTGGCCGGACGCCTGGGCGCTGAGCGTGGCGACCCTGTCCTACACCAACCAC
ACGCTGCTCCCGGAAGCCCTGGAATCCTGGCCGGTGGCGCTGATGGAGCGCCTGCTGCCGCGCCACATGCAG
ATCATCTACCTGATCAACGCCTTCCATATAGACGCGCTGCGCGCCCAGGACATCCACGACTTCGACCTGTTG
CGTTCGGTCAGCCTGATCGAGGAGGGCCACGGCCGGCGGGTGCGCATGGGCAACCTGGCGTTCCTCGGTTCG
CACCAGATCAACGGGGTATCGGCCTTGCACACCGAGCTGATGCGCGAAACCGTGTTCCATGACCTGCATCGC
CTCTACCCGCAGCGCATCAGCAACAAGACCAACGGCGTGTCGTTCCGCCGCTGGCTGTTCCAGGCCAACCCG
GGGTTGACCGAGCTGCTGGTGGAGACCCTCGGCGCCGACCTGCTGGACACCCCGGAACGGCGCCTGCCGGAC
CTCGAGGAGCACGTCGAGGACGCCAGGCTGCGGGCGCGCTTCGCCGAGCAGCGCCGGCAGAACAAGACCGCC
CTGGCGCGCCTGGTGCTGGACAGCCTCGGCGTGGCGATCGAACCGGAAGCGCTGTTCGATGTGCATATCAAG
CGTATCCACGAATACAAGCGGCAGTTGCTCAACCTGCTGCACACCGTGGCGCTGTACCAGGAGATCCGCAAC
GACCCGACCGCCGACCGCGTGCCGCGGGTGAAGATCTTCGCCGGCAAGGCTGCCGCCAGCTACCACCAGGCC
AAGCTGATCATCAAGCTGGCCAACGACATCGCCCGCACCATCAACGACGACCCCACCGTGCGCGGCCTGCTC
AAGCTGGTGTTCCTGCCCAACTACAACGTCAGCCTGGCCGAGGCGATCATTCCCGCGGCGGACCTCTCCGAG
CAGATTTCCACCGCCGGGCTCGAGGCCTCCGGCACCAGCAACATGAAGTTCGCCCTCAACGGCGCGCTGACC
ATCGGCACCCTGGACGGCGCCAACGTCGAGATGAGCCAGCGGATCGGCCTGGAACACATGTTCATCTTCGGC
CTCAGCGCCCAGCAGGTGGAGCAGCGCCGGCAAGCCGGGGAGCTGGAGATGGGCGGGGTGATCGCGGCCTCG
CCGCGGCTGGAGGAAGCCCTGGAGGCGATCCGCAGTGGGCTGTTCTCGGCCGACGACCGCAGCCGCTACGAA
GGGCTGGTGGACGGCCTGGTGCACGACGACCGCTTCATGCTCTGCGCCGACTTCGAGGCCTACTGGCATGCG
CAGTGCCGGGTCGAGGAAGTCTGGCGCGAGCCCGATCGCTGGTGGCGCTCGGCGTTGCTCAACGTGGCGCGG
ATCGGCTGGTTCAGCGCCGACCGGACGATCAGCGAATACGCCCGGGATATCTGGAAGCTATGA