ViewGene
Locus Name:
GeneID:
Location:

GeneID:1699
TrivialName: PA14_65400
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_65400
PAO1 Ortholog Locus:PA4950
Sequence Length:1086
Protein Length:361
Start: 5826552
Stop: 5827637
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08335.1|AE004908_1 (AE004908) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 361/361 (100%), Positives = 361/361 (100%)
Sequence:
ATGACTCCCCAACCTCTGGCCGACAACCTTTCCCCGCCGGATCCCGCCCGCCTCGCCCAGTCCATCAAGGAC
TGGGGCCGCGAGCTGGGGTTCCAGCAGGTCGGTATCAGCGACGTCGAGCTGGGCGAGCACGAAGCGCACCTG
CAGCGCTGGCTGGAGGCCGGCTACCACGGCGAGATGGACTACATGGCGGCGCACGGCAGCAAGCGCTCGCGA
CCTGCCGAGCTGGTTCCCGGCACGCTGCGGGTGATCTCCCTGCGCATGGATTACCTGCCCGGCGACACGCGC
ATGGCGCAGGTCCTCGCGACACCGGAAAAAGCCTACGTCTCGCGCTACGCCCTCGGCCGCGACTACCACAAG
CTGATCCGCAAACGTCTGCAACAACTGGCCGAGCGCATCCAGGCCGAAGTCGGCCCGTTCGGTTTCCGCGCC
TTCGTCGACAGCGCGCCGGTGCTGGAAAAGGCCATCGCCGAACAGGCCGGCCTCGGCTGGATCGGCAAGAAC
ACGCTGGTGCTCAACCGCAAGGCCGGCAGCTACTTCTTCCTCGGCGAGCTGTTCGTCGACATGCCGCTACCC
GTCGACCCGGCGATGGACAGCGAGCATTGCGGACGCTGCTCGGCCTGCCTGGACATCTGCCCGACCGCGGCC
TTCGTCGGCCCCTACCGGCTGGACGCGCGACGCTGCATCTCCTACCTGACCATCGAGTACAAGGGCGCGATT
CCGCTGGAGCTGCGGCCACTGATCGGCAACCGGGTATTCGGCTGCGACGACTGCCAGATCGTCTGCCCATGG
AATCGCTTCGCCCGCCCCACCGGGCAGGGCGACTTTCAGCCGCGCCACAGCCTGGACAACGCCGAACTCGCC
GAACTGTTCCTCTGGAGCGAGGAGGAGTTCCTCGGCCGCACCGAGGGTTCGCCGCTGCGCCGCGCCGGCTAC
GAACGTTGGTTGCGCAACCTGGCGGTGGGGCTGGGCAACGCGCCCTCGACCATCCCGGTGCTGGAGGCGCTG
AAGGCGCGCCGCGGGTTCCCTTCGGAGCTGGTCCGCGAGCACGTGGAATGGGCCCTGCGGCGCCACGGGGAA
ACCTAG
Translation:
MTPQPLADNLSPPDPARLAQSIKDWGRELGFQQVGISDVELGEHEAHLQRWLEAGYHGEMDYMAAHGSKRSR
PAELVPGTLRVISLRMDYLPGDTRMAQVLATPEKAYVSRYALGRDYHKLIRKRLQQLAERIQAEVGPFGFRA
FVDSAPVLEKAIAEQAGLGWIGKNTLVLNRKAGSYFFLGELFVDMPLPVDPAMDSEHCGRCSACLDICPTAA
FVGPYRLDARRCISYLTIEYKGAIPLELRPLIGNRVFGCDDCQIVCPWNRFARPTGQGDFQPRHSLDNAELA
ELFLWSEEEFLGRTEGSPLRRAGYERWLRNLAVGLGNAPSTIPVLEALKARRGFPSELVREHVEWALRRHGE
T*
AnnotationID:1708GeneID:1699
AnnotatorUID: diggins
Modification Date/Time: 2004-10-29 19:07:48
Gene Name:
Confidence Code:3
GeneProduct:putative iron-sulfur cluster-binding protein
Cell Localization:()
Synonyms:yjeS
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(12) Energy metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO58376.1| (AE016873) iron-sulfur cluster-binding protein [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 362

 Score =  621 bits (1602), Expect = e-177
 Identities = 303/357 (84%), Positives = 320/357 (89%), Gaps = 5/357 (1%)

>gb|AAN70467.1|AE016688_6 (AE016792) iron-sulfur cluster-binding protein, putative
           [Pseudomonas putida KT2440]
          Length = 354

 Score =  581 bits (1497), Expect = e-165
 Identities = 277/349 (79%), Positives = 308/349 (88%)

>gb|AAM37261.1| (AE011877) iron-sulfur cluster-binding protein [Xanthomonas
           axonopodis pv. citri str. 306]
          Length = 355

 Score =  469 bits (1207), Expect = e-131
 Identities = 225/352 (63%), Positives = 276/352 (78%), Gaps = 4/352 (1%)








 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:3401




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20548




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:35102




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1699_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1699
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2988
                           PA4950_tr
                           translation of PA4950
                           361
                           99.99
                           99.99
                           0
                           1922.0
     

     
     
93068
                           gb|AAG08335.1|AE004908_1
                           (AE004908) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           361
                           99.99
                           99.99
                           0
                           1922.0
     

     
     
93069
                           gb|AAO58376.1|
                           (AE016873) iron-sulfur cluster-binding protein [Pseudomonas syringae pv. tomato str. DC3000]
                           367
                           82.56
                           87.19
                           11
                           1603.0
     

     
     
93070
                           gb|AAN70467.1|AE016688_6
                           (AE016792) iron-sulfur cluster-binding protein, putative [Pseudomonas putida KT2440]
                           361
                           76.73
                           85.59
                           7
                           1492.0
     

     
     
93071
                           gb|AAM37261.1|
                           (AE011877) iron-sulfur cluster-binding protein [Xanthomonas axonopodis pv. citri str. 306]
                           363
                           61.98
                           76.58
                           10
                           1208.0
     

     






      

          
GC ORFID: 44701How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4950Glimmer Score: 

          
Start: 5090233Stop: 5091318

          
Length: 1086


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA4950 translation of PA4950Homolog Bit Score 744.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene3664 (ORF: BLASTX 622.0), t_PA4950 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACTCCCCAACCTCTGGCCGACAACCTTTCCCCGCCGGATCCCGCCCGCCTCGCCCAGTCCATCAAGGAC 
TGGGGCCGCGAGCTGGGGTTCCAGCAGGTCGGTATCAGCGACGTCGAGCTGGGCGAGCACGAAGCGCACCTG 
CAGCGCTGGCTGGAGGCCGGCTACCACGGCGAGATGGACTACATGGCGGCGCACGGCAGCAAGCGCTCGCGA 
CCTGCCGAGCTGGTTCCCGGCACGCTGCGGGTGATCTCCCTGCGCATGGATTACCTGCCCGGCGACACGCGC 
ATGGCGCAGGTCCTCGCGACACCGGAAAAAGCCTACGTCTCGCGCTACGCCCTCGGCCGCGACTACCACAAG 
CTGATCCGCAAACGTCTGCAACAACTGGCCGAGCGCATCCAGGCCGAAGTCGGCCCGTTCGGTTTCCGCGCC 
TTCGTCGACAGCGCGCCGGTGCTGGAAAAGGCCATCGCCGAACAGGCCGGCCTCGGCTGGATCGGCAAGAAC 
ACGCTGGTGCTCAACCGCAAGGCCGGCAGCTACTTCTTCCTCGGCGAGCTGTTCGTCGACATGCCGCTACCC 
GTCGACCCGGCGATGGACAGCGAGCATTGCGGACGCTGCTCGGCCTGCCTGGACATCTGCCCGACCGCGGCC 
TTCGTCGGCCCCTACCGGCTGGACGCGCGACGCTGCATCTCCTACCTGACCATCGAGTACAAGGGCGCGATT 
CCGCTGGAGCTGCGGCCACTGATCGGCAACCGGGTATTCGGCTGCGACGACTGCCAGATCGTCTGCCCATGG 
AATCGCTTCGCCCGCCCCACCGGGCAGGGCGACTTTCAGCCGCGCCACAGCCTGGACAACGCCGAACTCGCC 
GAACTGTTCCTCTGGAGCGAGGAGGAGTTCCTCGGCCGCACCGAGGGTTCGCCGCTGCGCCGCGCCGGCTAC 
GAACGTTGGTTGCGCAACCTGGCGGTGGGGCTGGGCAACGCGCCCTCGACCATCCCGGTGCTGGAGGCGCTG 
AAGGCGCGCCGCGGGTTCCCTTCGGAGCTGGTCCGCGAGCACGTGGAATGGGCCCTGCGGCGCCACGGGGAA 
ACCTAG