ViewGene
Locus Name:
GeneID:
Location:

GeneID:1698
TrivialName: PA14_26110
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_26110
PAO1 Ortholog Locus:PA2933
Sequence Length:1179
Protein Length:392
Start: 2280846
Stop: 2279668
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06321.1|AE004719_7 (AE004719) probable MFS transporter [Pseudomonas aeruginosa PAO1]
Identities = 390/392 (99%), Positives = 391/392 (99%)
Sequence:
GTGCTATTGCCGATCCTCCTGCTGGCCGCCGCCGGCTTCACCATCCTGACCACCGAGTTCGTCATCGTCGGC
CTGCTCCCGGCGCTTGCCGCAGACCTCCAGGTCAGCGTCGCCCAGGCCGGCCTGCTGGTCAGCCTGTTCGCC
TTCAGCGTCGCCGCCTTCGGTCCGTTCCTCACCGCCGCGCTGGCGGGCGTCGAACGCAAGCGGCTGTTCGTC
GCCTGCCTGCTGCTGTTCGCCGCGGCCAATGCGCTGGCCGCCGTGGCCGGCGATATCTGGACGATGGCCGTG
GCGCGCTTCGTCCCGGCCCTGGCGCTCCCGGTGTTCTGGGCCATGGCCAGCGAAACCGCCGCGCACCTGGCC
GGCCCCTCGCGCGAAGGGCGCGCCGTGGCGCTGGTGTTCTTCGGCATCGTCGCCGCCACCGTGCTCGGCATT
CCCATCGGCACGCTGATCGCCGACGCCTGGGGTTGGCGCCTGGCATTCGCCGCACTCGCCGCGCTGGCCCTG
GCCAAGGCGCTGCTGCTGGCCGCCTGGCTGCCGCGCATTCCCGGACGGCCGGGTGTCTCGCTGCGCAGCCAG
GCGAGCGTGTTGCGCCAACCGCTGGTGCTCGGCCACCTGTTGCTGTCGCTGCTGGTCTTCACCGGCATGTTC
ACCCCCTACACCTACCTGGCCGACATCCTCCAGCGCCTGGCCGGCTTCAGCGGTTCGCTGGTCGGCTGGACG
CTGATGGGCTTCGGCGCGGTAGGCCTGCTCGGCAACTGGCTCGGCGGGCGCCTGGTGGATCGCAGCCCACTG
GGCGCAACCCTGCTGTTCGTCCTGCTGATGGCGCTGGGCATGCTCGCCCTGGTGCCGACCCTCGGCAACGCC
TGGCTGCTCGCCGCCACCCTGGCGACCTGGGGCGTGGCCCAGGCAGCACTGTTCATCGTCGGCCAGGTGCGG
GTGATGAAGTCCGCGCCGCGGGCCCCGGCGTTCGCCGCCTCGCTGAACATCTCCGCCTGCAACGCCGGGATC
GGCATCGGCGCCCTCGCCGGCAGCCGGGTGATCGACGGCAGCGGCCTGGCGCCGCTCGGCGAGGTCGGCGCG
CTGGTCTGCCTGGCGGCGATGGCCGTGGCCCTGCTGCTGATGCTGGCGCCACGCCAAGCTGCCACCGAGCCG
TCCCTCGGCGGCCACATCCCTCACTGA
Translation:
MLLPILLLAAAGFTILTTEFVIVGLLPALAADLQVSVAQAGLLVSLFAFSVAAFGPFLTAALAGVERKRLFV
ACLLLFAAANALAAVAGDIWTMAVARFVPALALPVFWAMASETAAHLAGPSREGRAVALVFFGIVAATVLGI
PIGTLIADAWGWRLAFAALAALALAKALLLAAWLPRIPGRPGVSLRSQASVLRQPLVLGHLLLSLLVFTGMF
TPYTYLADILQRLAGFSGSLVGWTLMGFGAVGLLGNWLGGRLVDRSPLGATLLFVLLMALGMLALVPTLGNA
WLLAATLATWGVAQAALFIVGQVRVMKSAPRAPAFAASLNISACNAGIGIGALAGSRVIDGSGLAPLGEVGA
LVCLAAMAVALLLMLAPRQAATEPSLGGHIPH*
AnnotationID:1707GeneID:1698
AnnotatorUID: diggins
Modification Date/Time: 2005-04-08 10:10:24
Gene Name:
Confidence Code:3
GeneProduct:putative MFS transporter
Cell Localization:()
Synonyms:PA2933
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:putative sugar efflux transpoter
Functional Category Confidence Code:5
COGs:COG2814
Secondary Functional Category(ies):membrane protein
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>emb|CAE33969.1| (BX640447) putative sugar efflux transpoter [Bordetella
           bronchiseptica]
          Length = 394

 Score =  480 bits (1236), Expect = e-135
 Identities = 251/386 (65%), Positives = 302/386 (78%), Gaps = 1/386 (0%)

>emb|CAE41242.1| (BX640413) putative sugar efflux transpoter [Bordetella pertussis]
          Length = 393

 Score =  476 bits (1224), Expect = e-133
 Identities = 248/385 (64%), Positives = 299/385 (77%)

>gb|AAO56190.1| (AE016865) major facilitator family transporter [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 384

 Score =  461 bits (1186), Expect = e-129
 Identities = 239/375 (63%), Positives = 294/375 (78%), Gaps = 1/375 (0%)








 
Structural Features:
COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]






   
Genomic Context:






   
Comment:


















    ReferenceID:14415




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20546




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36115




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1698_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1698
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2987
                           PA2933_tr
                           translation of PA2933
                           392
                           99.48
                           99.74
                           0
                           1921.0
     

     
     
93062
                           gb|AAG06321.1|AE004719_7
                           (AE004719) probable MFS transporter [Pseudomonas aeruginosa PAO1]
                           392
                           99.23
                           99.74
                           0
                           1918.0
     

     
     
93064
                           emb|CAE41242.1|
                           (BX640413) putative sugar efflux transpoter [Bordetella pertussis] [Bordetella pertussis Tohama I]
                           397
                           62.97
                           75.81
                           9
                           1220.0
     

     
     
93063
                           emb|CAE33969.1|
                           (BX640447) putative sugar efflux transpoter [Bordetella bronchiseptica] [Bordetella bronchiseptica RB50]
                           404
                           62.87
                           75.24
                           22
                           1229.0
     

     
     
93065
                           emb|CAE38423.1|
                           (BX640432) putative sugar efflux transpoter [Bordetella parapertussis]
                           405
                           62.46
                           74.81
                           23
                           1212.0
     

     






      

          
GC ORFID: 44700How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2933Glimmer Score: 

          
Start: 2673079Stop: 2674257

          
Length: 1179


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2933 translation of PA2933Homolog Bit Score 744.0

          
Other Homologs:  psyr_15may02_Scaffold1_revised_gene1355 (ORF: BLASTX 454.0), psyr_15may02_Scaffold5_revised_gene6002 (ORF: BLASTX 419.0), t_PA2933 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGCTATTGCCGATCCTCCTGCTGGCCGCCGCCGGCTTCACCATCCTGACCACCGAGTTCGTCATCGTCGGC 
CTGCTCCCGGCGCTTGCCGCAGACCTCCAGGTCAGCGTCGCCCAGGCCGGCCTGCTGGTCAGCCTGTTCGCC 
TTCAGCGTCGCCGCCTTCGGTCCGTTCCTCACCGCCGCGCTGGCGGGCGTCGAACGCAAGCGGCTGTTCGTC 
GCCTGCCTGCTGCTGTTCGCCGCGGCCAATGCGCTGGCCGCCGTGGCCGGCGATATCTGGACGATGGCCGTG 
GCGCGCTTCGTCCCGGCCCTGGCGCTCCCGGTGTTCTGGGCCATGGCCAGCGAAACCGCCGCGCACCTGGCC 
GGCCCCTCGCGCGAAGGGCGCGCCGTGGCGCTGGTGTTCTTCGGCATCGTCGCCGCCACCGTGCTCGGCATT 
CCCATCGGCACGCTGATCGCCGACGCCTGGGGTTGGCGCCTGGCATTCGCCGCACTCGCCGCGCTGGCCCTG 
GCCAAGGCGCTGCTGCTGGCCGCCTGGCTGCCGCGCATTCCCGGACGGCCGGGTGTCTCGCTGCGCAGCCAG 
GCGAGCGTGTTGCGCCAACCGCTGGTGCTCGGCCACCTGTTGCTGTCGCTGCTGGTCTTCACCGGCATGTTC 
ACCCCCTACACCTACCTGGCCGACATCCTCCAGCGCCTGGCCGGCTTCAGCGGTTCGCTGGTCGGCTGGACG 
CTGATGGGCTTCGGCGCGGTAGGCCTGCTCGGCAACTGGCTCGGCGGGCGCCTGGTGGATCGCAGCCCACTG 
GGCGCAACCCTGCTGTTCGTCCTGCTGATGGCGCTGGGCATGCTCGCCCTGGTGCCGACCCTCGGCAACGCC 
TGGCTGCTCGCCGCCACCCTGGCGACCTGGGGCGTGGCCCAGGCAGCACTGTTCATCGTCGGCCAGGTGCGG 
GTGATGAAGTCCGCGCCGCGGGCCCCGGCGTTCGCCGCCTCGCTGAACATCTCCGCCTGCAACGCCGGGATC 
GGCATCGGCGCCCTCGCCGGCAGCCGGGTGATCGACGGCAGCGGCCTGGCGCCGCTCGGCGAGGTCGGCGCG 
CTGGTCTGCCTGGCGGCGATGGCCGTGGCCCTGCTGCTGATGCTGGCGCCACGCCAAGCTGCCACCGAGCCG 
TCCCTCGGCGGCCACATCCCTCACTGA