ViewGene
Locus Name:
GeneID:
Location:

GeneID:1697
TrivialName: PA14_48910
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_48910
PAO1 Ortholog Locus:
Sequence Length:1284
Protein Length:427
Start: 4349013
Stop: 4347730
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04115.1|AE004507_14 (AE004507) hypothetical protein of bacteriophage Pf1 [Pseudomonas aeruginosa PAO1]
Identities = 375/432 (86%), Positives = 385/432 (89%), Gaps = 13/432 (3%)
Sequence:
GTGTCGATCAAGATCCATCACGGCCCCAATGGCTCCTACAAGACCTCAGGCGCGATCCAAGATGACGCCGTG
CCCGCGCTGAAAGACGGGCGGGTGATCATCACCAACGTGCGCGGCTTCACCCTGGAGCGGGCCTATCAGGTC
TTCCCGGACCTGCCCAACACGGCGGAAATCATCAACCTCGATCTGGAGTCGCTGGAAGACCTCGAAAAGATG
CGCACGTGGTTTCAGTGGGCGCCCCGCGGGGCCTTCCTGATCTTCGACGAAACCCAACTGCTGTTTCCCAAG
TCCTGGCGGGAAAAAGACCTCGAGCGCTTCGACTACCCCGGTGGACCGGAAGCGGCCCACGCGGCCGACCGC
CCCATGGGCTGGCTCGACGCCTGGACCCGGCACCGGCATTTCAACTGGGACATCGTCCTCACCACGCCGAAC
ATCTCCTACATCCGCGACGACATCCGCATGACCTGCGAGATGGCCTACAAGCATTCCAACCTCGCGGTGATC
GGCATCCCTGGCCGCTACAAGGAGGCCCAGCATGACGCCCAACTCAACCGTCCGCCCGCCGATGGCACCATC
ATCGAATACAAGCGGATCCGAAAGCAGACCTTCGCCCTCTACCAGTCCACGGCCACCGGCAAGACCCAAGAC
ACCAAGGCGGGCAAGAGCCTCTTCCGGTCGCCTAAGCTGGTTCTTCTACTGGCATTGCTGGCCGGCACTATT
GGCTTTGTTAGCTATATGGGGCCAATGCGGGTTATTGGTGCTAAGCCTGATCCGGCGGCTTCCGCGCCTACT
CCTAAGCCTCTTCCGACCGCTACTGCGCCTGCTGCTGTGGCTGCTCCAGCGCGTCCTGCTGCGAATAGCTTT
CTTCCTCCTGGGCTTGTACCTGATGGGCCTGCTGCTGCGCCTGTTGATCTGAACGCCCATCCCTTCGCCGAT
CGGCGGATTTCGATCCTCGCCCACGCCTACATGCCGTCGAAGGGCGATATCTACATGTTCGCCCTGGATGAC
CCTGCCGGCCGGCACCTGGAACTCACCAGTTGGCAACTCGTGGGATCCGGCTACGCGATCAAGCCACGCGGC
GAGTGCGTGGCCGAACTGCTCTACGGGGAATGGGAGGGGACCGTCACCTGTGCCGGCTCCTCGGTCCGGCCG
GTGGCGGTCGCTGGCGTGCCGCCGTTGCTCAACCTGCCGCCATCGGCAGCGGGCGCCCGCGAACCTGACAAG
GTGCCGCTGACCATCGTCCCCGATTCCGAATACGCCTCGCGGCCCTGGAGGCAGAAATGA
Translation:
MSIKIHHGPNGSYKTSGAIQDDAVPALKDGRVIITNVRGFTLERAYQVFPDLPNTAEIINLDLESLEDLEKM
RTWFQWAPRGAFLIFDETQLLFPKSWREKDLERFDYPGGPEAAHAADRPMGWLDAWTRHRHFNWDIVLTTPN
ISYIRDDIRMTCEMAYKHSNLAVIGIPGRYKEAQHDAQLNRPPADGTIIEYKRIRKQTFALYQSTATGKTQD
TKAGKSLFRSPKLVLLLALLAGTIGFVSYMGPMRVIGAKPDPAASAPTPKPLPTATAPAAVAAPARPAANSF
LPPGLVPDGPAAAPVDLNAHPFADRRISILAHAYMPSKGDIYMFALDDPAGRHLELTSWQLVGSGYAIKPRG
ECVAELLYGEWEGTVTCAGSSVRPVAVAGVPPLLNLPPSAAGAREPDKVPLTIVPDSEYASRPWRQK*
AnnotationID:1706GeneID:1697
AnnotatorUID: diggins
Modification Date/Time: 2005-05-24 17:05:22
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(22) Related to phage, transposon, or plasmid
Alternate Gene Product Name:hypothetical protein of bacteriophage Pf1
Functional Category Confidence Code:5
COGs:COG4128
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG4128, Zot, Zonula occludens toxin
Score =  493 bits (1270), Expect = e-140
Identities = 176/424 (41%), Positives = 215/424 (50%), Gaps = 26/424 (6%)






   
Genomic Context:






   
Comment:


















    ReferenceID:14413




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20544




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37584




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1697_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1697
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2986
                           PA0726_tr
                           translation of PA0726
                           432
                           86.80
                           89.12
                           13
                           1934.0
     

     
     
93060
                           gb|AAG04115.1|AE004507_14
                           (AE004507) hypothetical protein of bacteriophage Pf1 [Pseudomonas aeruginosa PAO1]
                           432
                           86.57
                           89.12
                           13
                           1931.0
     

     
     
93061
                           emb|CAA47169.1|
                           (X66604) unnamed protein product [Pseudomonas sp.]
                           476
                           19.74
                           27.94
                           253
                           388.0
     

     






      

          
GC ORFID: 44699How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0726Glimmer Score: 

          
Start: 604895Stop: 606178

          
Length: 1284


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0726 translation of PA0726Homolog Bit Score 744.0

          
Other Homologs:  t_PA0726 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGTCGATCAAGATCCATCACGGCCCCAATGGCTCCTACAAGACCTCAGGCGCGATCCAAGATGACGCCGTG 
CCCGCGCTGAAAGACGGGCGGGTGATCATCACCAACGTGCGCGGCTTCACCCTGGAGCGGGCCTATCAGGTC 
TTCCCGGACCTGCCCAACACGGCGGAAATCATCAACCTCGATCTGGAGTCGCTGGAAGACCTCGAAAAGATG 
CGCACGTGGTTTCAGTGGGCGCCCCGCGGGGCCTTCCTGATCTTCGACGAAACCCAACTGCTGTTTCCCAAG 
TCCTGGCGGGAAAAAGACCTCGAGCGCTTCGACTACCCCGGTGGACCGGAAGCGGCCCACGCGGCCGACCGC 
CCCATGGGCTGGCTCGACGCCTGGACCCGGCACCGGCATTTCAACTGGGACATCGTCCTCACCACGCCGAAC 
ATCTCCTACATCCGCGACGACATCCGCATGACCTGCGAGATGGCCTACAAGCATTCCAACCTCGCGGTGATC 
GGCATCCCTGGCCGCTACAAGGAGGCCCAGCATGACGCCCAACTCAACCGTCCGCCCGCCGATGGCACCATC 
ATCGAATACAAGCGGATCCGAAAGCAGACCTTCGCCCTCTACCAGTCCACGGCCACCGGCAAGACCCAAGAC 
ACCAAGGCGGGCAAGAGCCTCTTCCGGTCGCCTAAGCTGGTTCTTCTACTGGCATTGCTGGCCGGCACTATT 
GGCTTTGTTAGCTATATGGGGCCAATGCGGGTTATTGGTGCTAAGCCTGATCCGGCGGCTTCCGCGCCTACT 
CCTAAGCCTCTTCCGACCGCTACTGCGCCTGCTGCTGTGGCTGCTCCAGCGCGTCCTGCTGCGAATAGCTTT 
CTTCCTCCTGGGCTTGTACCTGATGGGCCTGCTGCTGCGCCTGTTGATCTGAACGCCCATCCCTTCGCCGAT 
CGGCGGATTTCGATCCTCGCCCACGCCTACATGCCGTCGAAGGGCGATATCTACATGTTCGCCCTGGATGAC 
CCTGCCGGCCGGCACCTGGAACTCACCAGTTGGCAACTCGTGGGATCCGGCTACGCGATCAAGCCACGCGGC 
GAGTGCGTGGCCGAACTGCTCTACGGGGAATGGGAGGGGACCGTCACCTGTGCCGGCTCCTCGGTCCGGCCG 
GTGGCGGTCGCTGGCGTGCCGCCGTTGCTCAACCTGCCGCCATCGGCAGCGGGCGCCCGCGAACCTGACAAG 
GTGCCGCTGACCATCGTCCCCGATTCCGAATACGCCTCGCGGCCCTGGAGGCAGAAATGA