ViewGene
Locus Name:
GeneID:
Location:

GeneID:1696
TrivialName: PA14_53400
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_53400
PAO1 Ortholog Locus:PA0840
Sequence Length:1113
Protein Length:370
Start: 4736562
Stop: 4735450
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04229.1|AE004518_10 (AE004518) probable oxidoreductase [Pseudomonas aeruginosa PAO1]
Identities = 370/370 (100%), Positives = 370/370 (100%)
Sequence:
ATGAGTGCCCCCGTAGAAGCCCTGTTCCAACCGTTCCGTCTCGGCGCCCTGGAGCTGCCCACCCGTGTGGTG
ATGGCGCCGATGACCCGCAACTTTTCCCCGGGCGGCGTACCCAACGCCAAGGTCGTCGAGTACTACCGCCGG
CGCGCCGCCGCCGGCGTCGGCCTGATCGTCAGCGAAGGCACCACGGTCGGCCACAAGGCCGCCAACGGTTAT
CCGAACGTGCCGCGCTTCTATGGCGAGGACGCCCTGGCCGGCTGGAAGCAGGTGGTCGATGCAGTGCATGCC
GAGGGCGGGCGCATCGTTCCGCAGCTCTGGCACGTCGGCAGCGTTCGGCGCCTGGGCGTGGAGCCGGACGCC
AGCGTGCCCGGCTACGGCCCGATGGAGAAGGCCAAGGACGGCAAGGTGCTGGTCCACGGCATGAGCAAGGCC
GACATCCAGGAAGTCATCGCCGCCTTCGCCCAGGCCGCCCGCGACGCCCAGGCGATCGGCATGGACGGGGTG
GAGATCCACGGCGCCCACGGCTACCTGATCGACCAGTTCTTCTGGGAAGGCAGCAACCAGCGGGACGACGAG
TACGGCGGCAGCCTGGCCAATCGCTCGCGCTTCGCCGTCGAGCTGGTGCGGGCGGTGCGCGCGGCGGTCGGC
GCGGATTTCCCGATCATCTTCCGCTTCTCCCAATGGAAGCAGCAGGACTATTCCGCGCGCCTGGTGGAAACC
CCGGAGGGCCTGCGCGAGTTCCTCGCGCCGCTGGTGGAGGCCGGCGTCGATATCTTCCACTGCTCGACCCGC
CGCTTCTGGATTCCCGAGTTCGAAGGCTCGGAACTCAACCTGGCCGGCTGGACCCGCGAGCTGACCGGCAAG
CCGACCATTACCGTGGGTAACGTCGGCCTGGACGGCAGCGAGTTCCTGCAATTCTTCGGCAAAACCGACGAG
GTGGCGCAGCCGGCGAGCATCGACGGCCTGGTGGAGCGCCTGGACAAGGGCGAGTTCGACCTGGTCGCGGTG
GGCCGCGCGCTGCTGGTGGATCCGGAGTGGGCGGTGAAGGTCCGCGAGGGGCGCATCGGCGACATCAAGCCG
TTCAGCCGCGAGGCCCTGGCCAGCCTGGTCTGA
Translation:
MSAPVEALFQPFRLGALELPTRVVMAPMTRNFSPGGVPNAKVVEYYRRRAAAGVGLIVSEGTTVGHKAANGY
PNVPRFYGEDALAGWKQVVDAVHAEGGRIVPQLWHVGSVRRLGVEPDASVPGYGPMEKAKDGKVLVHGMSKA
DIQEVIAAFAQAARDAQAIGMDGVEIHGAHGYLIDQFFWEGSNQRDDEYGGSLANRSRFAVELVRAVRAAVG
ADFPIIFRFSQWKQQDYSARLVETPEGLREFLAPLVEAGVDIFHCSTRRFWIPEFEGSELNLAGWTRELTGK
PTITVGNVGLDGSEFLQFFGKTDEVAQPASIDGLVERLDKGEFDLVAVGRALLVDPEWAVKVREGRIGDIKP
FSREALASLV*
AnnotationID:1705GeneID:1696
AnnotatorUID: danlee
Modification Date/Time: 2004-04-30 15:03:34
Gene Name:
Confidence Code:3
GeneProduct:probable oxidoreductase
Cell Localization:()
Synonyms:PA0840
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1902, pfam00724, KOG0134
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG1902, NemA, NADH:flavin oxidoreductases. Score: 315, 1e-86
pfam00724, Oxidored_FMN, NADH:flavin oxidoreductase / NADH oxidase family. Score: 247, 2e-66
KOG0134, NADH:flavin oxidoreductase/12-oxophytodienoate reductase.  Score: 161, 2e-40






   
Genomic Context:






   
Comment:


















    ReferenceID:3395




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20542




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1696
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2983
                           PA0840_tr
                           translation of PA0840
                           370
                           99.99
                           99.99
                           0
                           1920.0
     

     
     
93003
                           gb|AAG04229.1|AE004518_10
                           (AE004518) probable oxidoreductase [Pseudomonas aeruginosa PAO1]
                           370
                           99.99
                           99.99
                           0
                           1920.0
     

     
     
93004
                           gb|AAO54700.1|
                           (AE016860) oxidoreductase, FAD/FMN-binding [Pseudomonas syringae pv. tomato str. DC3000]
                           370
                           80.81
                           90.00
                           3
                           1580.0
     

     
     
93006
                           gb|AAK24100.1|
                           (AE005885) FMN oxidoreductase [Caulobacter crescentus CB15]
                           371
                           57.68
                           71.96
                           9
                           1090.0
     

     
     
93005
                           dbj|BAC71641.1|
                           (AP005037) putative oxidoreductase [Streptomyces avermitilis MA-4680]
                           378
                           55.82
                           69.57
                           11
                           1097.0
     

     






      

          
GC ORFID: 44698How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0840Glimmer Score: 

          
Start: 217345Stop: 218457

          
Length: 1113


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0840 translation of PA0840Homolog Bit Score 744.0

          
Other Homologs:  psyr_15may02_Scaffold3_revised_gene4342 (ORF: BLASTX 607.0), t_PA1334 (ORF: BLASTX 181.0), t_PA0840 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGTGCCCCCGTAGAAGCCCTGTTCCAACCGTTCCGTCTCGGCGCCCTGGAGCTGCCCACCCGTGTGGTG 
ATGGCGCCGATGACCCGCAACTTTTCCCCGGGCGGCGTACCCAACGCCAAGGTCGTCGAGTACTACCGCCGG 
CGCGCCGCCGCCGGCGTCGGCCTGATCGTCAGCGAAGGCACCACGGTCGGCCACAAGGCCGCCAACGGTTAT 
CCGAACGTGCCGCGCTTCTATGGCGAGGACGCCCTGGCCGGCTGGAAGCAGGTGGTCGATGCAGTGCATGCC 
GAGGGCGGGCGCATCGTTCCGCAGCTCTGGCACGTCGGCAGCGTTCGGCGCCTGGGCGTGGAGCCGGACGCC 
AGCGTGCCCGGCTACGGCCCGATGGAGAAGGCCAAGGACGGCAAGGTGCTGGTCCACGGCATGAGCAAGGCC 
GACATCCAGGAAGTCATCGCCGCCTTCGCCCAGGCCGCCCGCGACGCCCAGGCGATCGGCATGGACGGGGTG 
GAGATCCACGGCGCCCACGGCTACCTGATCGACCAGTTCTTCTGGGAAGGCAGCAACCAGCGGGACGACGAG 
TACGGCGGCAGCCTGGCCAATCGCTCGCGCTTCGCCGTCGAGCTGGTGCGGGCGGTGCGCGCGGCGGTCGGC 
GCGGATTTCCCGATCATCTTCCGCTTCTCCCAATGGAAGCAGCAGGACTATTCCGCGCGCCTGGTGGAAACC 
CCGGAGGGCCTGCGCGAGTTCCTCGCGCCGCTGGTGGAGGCCGGCGTCGATATCTTCCACTGCTCGACCCGC 
CGCTTCTGGATTCCCGAGTTCGAAGGCTCGGAACTCAACCTGGCCGGCTGGACCCGCGAGCTGACCGGCAAG 
CCGACCATTACCGTGGGTAACGTCGGCCTGGACGGCAGCGAGTTCCTGCAATTCTTCGGCAAAACCGACGAG 
GTGGCGCAGCCGGCGAGCATCGACGGCCTGGTGGAGCGCCTGGACAAGGGCGAGTTCGACCTGGTCGCGGTG 
GGCCGCGCGCTGCTGGTGGATCCGGAGTGGGCGGTGAAGGTCCGCGAGGGGCGCATCGGCGACATCAAGCCG 
TTCAGCCGCGAGGCCCTGGCCAGCCTGGTCTGA