ViewGene
Locus Name:
GeneID:
Location:

GeneID:1694
TrivialName: PA14_10750
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_10750
PAO1 Ortholog Locus:PA4113
Sequence Length:1191
Protein Length:396
Start: 926433
Stop: 927623
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07500.1|AE004828_1 (AE004828) probable MFS transporter [Pseudomonas aeruginosa PAO1]
Identities = 395/396 (99%), Positives = 396/396 (100%)
Sequence:
ATGGACAGCACCTCCGAAACCCGCAGCGGCAGCTGGCTGAGCGTGATCGCCCTGGCCCTGGCCGCCTTCATC
TTCAACACCACGGAGTTCGTCCCGGTCGGCCTGCTCAGCGACATCGGCCACAGCTTCGAGATGCCCACCTCG
CAGGTCGGCCTGATGTTGACCATCTATGCCTGGGTGGTGTCGCTGGCCTCGTTGCCGATGATGCTGCTGACC
CGCAATATCGAGCGGCGCAAGCTGCTGGTCGGGGTATTCCTGCTGTTCATCGCCAGCCACGTGCTGTCCGGG
CTGGCCTGGAGCTTCCAGGTGCTGATGCTCAGCCGGATCGGCATTGCCTTCGCCCACGCGGTGTTCTGGGCC
ATCACCGCTTCGCTGGCGGTGCGCGTGGCGCCGCCGGGACAGCAGGCCAAGGCGCTAGGGCTGCTGGCCACC
GGCACCACCCTGGCGATGGTCCTGGGCATCCCGCTGGGGCGGGTGGTCGGCGAGGCCCTGGGCTGGCGTACC
ACCTTCATGGCCATCGCCGGACTCTCGGTGCTGACCTTGCTCTACCTGGCGCGCTCCCTGCCGCTGCTGCCA
AGCCAGAATTCCGGTTCCCTGCGCAGCCTGCCGATGCTGTTCCGACGCCCGGCGCTGGTTTGCCTGTACGTG
CTGACCGTGGTGGTGATCAGCGCCCAGTTCACCGCCTACAGCTACATCGAGCCCTTCGCCAAGCAGGTGGCG
CAGATGAGCGGCGAGGCGACCACCCTGCTGTTGCTGTTGTTCGGCGGCGCCGGGATCTTCGGTTCGATCCTC
TTCAGCCGCTACAGCGAGGCTTTCCCGCGAGGCTTCCTGCTGGCCGCGATCCTCGCCTTGGGCAGCAGCCTG
GCGCTGCTGTTGCCGCTGTCCGCGCAGCCGACCTGGCTGATGGCGCTCAGCCTGCTCTGGGGCATGTCGATC
ATGTGCTTCGGCCTGGCCCAGCAGTCCCGCGTCCTGCGCCTCGCCTCGGACGCCACCGACGTGGCCATGGCG
CTGTTCTCCGGCCTGTACAACGTCGGCATCGGCGCCGGCGCGCTGCTCGGCAGCGTGGTCAGCGAACGCATG
GGCCTGGCCTCGATCGGCAACGTCGGCGCCGCGCTGGCGCTGGCCGGCCTGCTGCTCGCCCTGTTCGCCGCA
CTGCGCTACGCGGAGGCGCTGAAAACCACGTCGTTGTGA
Translation:
MDSTSETRSGSWLSVIALALAAFIFNTTEFVPVGLLSDIGHSFEMPTSQVGLMLTIYAWVVSLASLPMMLLT
RNIERRKLLVGVFLLFIASHVLSGLAWSFQVLMLSRIGIAFAHAVFWAITASLAVRVAPPGQQAKALGLLAT
GTTLAMVLGIPLGRVVGEALGWRTTFMAIAGLSVLTLLYLARSLPLLPSQNSGSLRSLPMLFRRPALVCLYV
LTVVVISAQFTAYSYIEPFAKQVAQMSGEATTLLLLLFGGAGIFGSILFSRYSEAFPRGFLLAAILALGSSL
ALLLPLSAQPTWLMALSLLWGMSIMCFGLAQQSRVLRLASDATDVAMALFSGLYNVGIGAGALLGSVVSERM
GLASIGNVGAALALAGLLLALFAALRYAEALKTTSL*
AnnotationID:1703GeneID:1694
AnnotatorUID: diggins
Modification Date/Time: 2005-03-30 11:11:03
Gene Name:
Confidence Code:3
GeneProduct:putative MFS transporter
Cell Localization:()
Synonyms:sotB
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:putative sugar efflux transpoter
Functional Category Confidence Code:5
COGs:COG2814
Secondary Functional Category(ies):membrane protein
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN68040.1|AE016436_8 (AE016783) major facilitator family transporter [Pseudomonas putida
           KT2440]
          Length = 408

 Score =  543 bits (1399), Expect = e-154
 Identities = 280/385 (72%), Positives = 331/385 (85%)

>gb|AAO54533.1| (AE016859) major facilitator family transporter [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 407

 Score =  518 bits (1335), Expect = e-146
 Identities = 259/381 (67%), Positives = 318/381 (83%)

>gb|AAN80407.1|AE016760_266 (AE016760) Sugar efflux transporter [Escherichia coli CFT073]
          Length = 396

 Score =  451 bits (1159), Expect = e-126
 Identities = 229/392 (58%), Positives = 298/392 (76%)






 
Structural Features:
COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]
CD-Length = 394 residues, 100.0% aligned
Score =  251 bits (642), Expect = 1e-67
Identities = 172/394 (43%), Positives = 238/394 (60%), Gaps = 2/394 (0%)






   
Genomic Context:
other possible gene names: ydeA, pnuP






   
Comment:


















    ReferenceID:3391




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20538




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36843




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1694_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1694
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2981
                           PA4113_tr
                           translation of PA4113
                           396
                           99.74
                           99.99
                           0
                           1925.0
     

     
     
92969
                           gb|AAG07500.1|AE004828_1
                           (AE004828) probable MFS transporter [Pseudomonas aeruginosa PAO1]
                           396
                           99.74
                           99.99
                           0
                           1925.0
     

     
     
92970
                           gb|AAN68040.1|AE016436_8
                           (AE016783) major facilitator family transporter [Pseudomonas putida KT2440]
                           413
                           68.03
                           80.62
                           22
                           1391.0
     

     
     
92971
                           gb|AAO54533.1|
                           (AE016859) major facilitator family transporter [Pseudomonas syringae pv. tomato str. DC3000]
                           408
                           63.97
                           78.92
                           13
                           1332.0
     

     
     
92972
                           emb|CAB53453.1|
                           (AJ249181) sugar efflux transpoter [Erwinia chrysanthemi]
                           399
                           60.40
                           78.44
                           7
                           1215.0
     

     






      

          
GC ORFID: 44696How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4113Glimmer Score: 

          
Start: 4027504Stop: 4026314

          
Length: 1191


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4113 translation of PA4113Homolog Bit Score 746.0

          
Other Homologs:  psyr_15may02_Scaffold3_revised_gene4242 (ORF: BLASTX 514.0), t_PA4113 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGACAGCACCTCCGAAACCCGCAGCGGCAGCTGGCTGAGCGTGATCGCCCTGGCCCTGGCCGCCTTCATC 
TTCAACACCACGGAGTTCGTCCCGGTCGGCCTGCTCAGCGACATCGGCCACAGCTTCGAGATGCCCACCTCG 
CAGGTCGGCCTGATGTTGACCATCTATGCCTGGGTGGTGTCGCTGGCCTCGTTGCCGATGATGCTGCTGACC 
CGCAATATCGAGCGGCGCAAGCTGCTGGTCGGGGTATTCCTGCTGTTCATCGCCAGCCACGTGCTGTCCGGG 
CTGGCCTGGAGCTTCCAGGTGCTGATGCTCAGCCGGATCGGCATTGCCTTCGCCCACGCGGTGTTCTGGGCC 
ATCACCGCTTCGCTGGCGGTGCGCGTGGCGCCGCCGGGACAGCAGGCCAAGGCGCTAGGGCTGCTGGCCACC 
GGCACCACCCTGGCGATGGTCCTGGGCATCCCGCTGGGGCGGGTGGTCGGCGAGGCCCTGGGCTGGCGTACC 
ACCTTCATGGCCATCGCCGGACTCTCGGTGCTGACCTTGCTCTACCTGGCGCGCTCCCTGCCGCTGCTGCCA 
AGCCAGAATTCCGGTTCCCTGCGCAGCCTGCCGATGCTGTTCCGACGCCCGGCGCTGGTTTGCCTGTACGTG 
CTGACCGTGGTGGTGATCAGCGCCCAGTTCACCGCCTACAGCTACATCGAGCCCTTCGCCAAGCAGGTGGCG 
CAGATGAGCGGCGAGGCGACCACCCTGCTGTTGCTGTTGTTCGGCGGCGCCGGGATCTTCGGTTCGATCCTC 
TTCAGCCGCTACAGCGAGGCTTTCCCGCGAGGCTTCCTGCTGGCCGCGATCCTCGCCTTGGGCAGCAGCCTG 
GCGCTGCTGTTGCCGCTGTCCGCGCAGCCGACCTGGCTGATGGCGCTCAGCCTGCTCTGGGGCATGTCGATC 
ATGTGCTTCGGCCTGGCCCAGCAGTCCCGCGTCCTGCGCCTCGCCTCGGACGCCACCGACGTGGCCATGGCG 
CTGTTCTCCGGCCTGTACAACGTCGGCATCGGCGCCGGCGCGCTGCTCGGCAGCGTGGTCAGCGAACGCATG 
GGCCTGGCCTCGATCGGCAACGTCGGCGCCGCGCTGGCGCTGGCCGGCCTGCTGCTCGCCCTGTTCGCCGCA 
CTGCGCTACGCGGAGGCGCTGAAAACCACGTCGTTGTGA