ViewGene

Locus Name:
GeneID:
Location:

GeneID:1693
TrivialName: PA14_17400
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_17400
PAO1 Ortholog Locus:PA3629
Sequence Length:1113
Protein Length:370
Start: 1493023
Stop: 1494135
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07017.1|AE004783_2 (AE004783) alcohol dehydrogenase class III [Pseudomonas aeruginosa PAO1]
Identities = 369/370 (99%), Positives = 370/370 (100%)
Sequence:
ATGATCAAGTCCCGTGCCGCCGTCGCCTTCGCCCCCAACAAGCCGTTGGAAATCGTCGAGGTGGATGTGGCG
CCGCCGCAGAAGGGCGAGGTACTGGTGCGCATCGTCGCCACCGGCGTCTGCCATACCGATGCGTACACCCTG
TCCGGCCAGGATTCCGAGGGGGTGTTCCCGTGCATTCTGGGCCACGAAGGTGGCGGCATCGTCGAAGCGGTG
GGCGAGGGCGTGACCTCCCTGCAGGTGGGCGATCATGTCATCCCGCTGTACACCGCCGAGTGCGGCAAGTGC
AAATTCTGCCTGTCCGGCAAGACCAACCTCTGCCAGGCCGTGCGCGCCACCCAGGGCAAGGGCCTGATGCCC
GACGGCACCAGCCGTTTCTCCTACAAGGGCGAGCCGGTCTTCCACTACATGGGCTGCTCGACCTTCTCCGAA
TACACCGTGCTGCCGGAAATCTCCCTGGCGAAGATTCCCAAGGACGCGCCGCTGGATAAGGTCTGCCTGCTT
GGTTGCGGCGTCACCACCGGGATCGGCGCCGTGCTGAATACCGCCAAGGTGGAAGAGGGCGCTACCGTTGCC
ATCTTCGGCCTGGGCGGTATCGGCCTGGCGGCGATCATCGGGGCGAAGATGGCCAAGGCCGCGCGCATCATC
GCGGTCGACATCAACCCGGGCAAGTTCGACATCGCCAGGGAGCTGGGCGCCACCGACTTCATCAATCCGAAG
GACTACGACAAGCCGATCCAGGACGTCATCGTCGAACTGACCGATGGCGGCGTCGACTACTCCTTCGAGTGC
GTCGGCAACGTGCAGTTGATGCGCGCCGCGCTGGAATGCTGCCACAAGGGCTGGGGCGAGTCGGTGATCATC
GGTGTCGCCGGCGCCGGCCAGGAAATCAGCACCCGGCCGTTCCAACTGGTCACCGGCCGCGTCTGGCGCGGT
TCGGCGTTCGGCGGGGTGCGCGGGCGCAGCGAGTTGCCGAGCTATGTCGAGAAGGCGCAGAAGGGCGAGATC
CCGCTGGATACCTTCATCACCCACACCATGGGGCTGGAGGACATCAACGAGGCCTTCGAGCTGATGCACGAA
GGCAAGAGCATCCGCACCGTCATTCATTACTGA
Translation:
MIKSRAAVAFAPNKPLEIVEVDVAPPQKGEVLVRIVATGVCHTDAYTLSGQDSEGVFPCILGHEGGGIVEAV
GEGVTSLQVGDHVIPLYTAECGKCKFCLSGKTNLCQAVRATQGKGLMPDGTSRFSYKGEPVFHYMGCSTFSE
YTVLPEISLAKIPKDAPLDKVCLLGCGVTTGIGAVLNTAKVEEGATVAIFGLGGIGLAAIIGAKMAKAARII
AVDINPGKFDIARELGATDFINPKDYDKPIQDVIVELTDGGVDYSFECVGNVQLMRAALECCHKGWGESVII
GVAGAGQEISTRPFQLVTGRVWRGSAFGGVRGRSELPSYVEKAQKGEIPLDTFITHTMGLEDINEAFELMHE
GKSIRTVIHY*
AnnotationID:1702GeneID:1693
AnnotatorUID: diggins
Modification Date/Time: 2005-06-20 20:08:00
Gene Name:adhC
Confidence Code:2
GeneProduct:alcohol dehydrogenase class III
Cell Localization:(1) Cytoplasmic
Synonyms:fdh
Cell Localization Confidence Code:2
MolecularFunction:
Functional Category:(8) Central intermediary metabolism
Alternate Gene Product Name:formaldehyde dehydrogenase
Functional Category Confidence Code:5
COGs:KOG0022,COG1062
Secondary Functional Category(ies):energy metabolism
EC Number:1.2.1.1, 1.1.1.2
Status:ACTIVE
Pathway:
Homology:
>emb|CAB64351.1| (AJ243941) putative formaldehyde dehydrogenase
           (glutathione-dependent) [Pseudomonas sp.]
          Length = 372

 Score =  673 bits (1736), Expect = 0.0
 Identities = 326/368 (88%), Positives = 352/368 (95%)

>gb|AAO55078.1| (AE016861) alcohol dehydrogenase, class III [Pseudomonas syringae
           pv. tomato str. DC3000]
          Length = 370

 Score =  643 bits (1658), Expect = 0.0
 Identities = 308/370 (83%), Positives = 345/370 (93%)

>gb|AAN53077.1|AE015922_6 (AE015922) zinc-binding dehydrogenase [Shewanella oneidensis MR-1]
          Length = 376

 Score =  619 bits (1596), Expect = e-177
 Identities = 292/370 (78%), Positives = 335/370 (90%)
Structural Features:
KOG0022, Alcohol dehydrogenase, class III 
[Secondary metabolites biosynthesis, transport and catabolism]
CD-Length = 375 residues,  98.7% aligned
Score =  558 bits (1440), Expect = 6e-160
Identities = 247/370 (66%), Positives = 303/370 (81%), Gaps = 1/370 (0%)

COG1062, AdhC, Zn-dependent alcohol dehydrogenases, class III 
[Energy production and conversion]
CD-Length = 366 residues, 100.0% aligned
Score =  554 bits (1430), Expect = 1e-158
Identities = 264/369 (71%), Positives = 308/369 (83%), Gaps = 3/369 (0%)
Genomic Context:
Comment:
ReferenceID:3389
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:20536
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:31914
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:1693_cdd.html
URL:
ReferenceID:34184
Author/Investigator(s): Galamba A, Soetaert K, Buyssens P, Monnaie D, Jacobs P, Content J.
Title: Molecular and biochemical characterisation of Mycobacterium smegmatis alcohol dehydrogenase C.
PubMed: 11257547
MedLine:
Source:
FEMS Microbiol Lett. 2001 Mar 1;196(1):51-6.
Reference Type:Journal
Data:
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11257547
ReferenceID:34185
Author/Investigator(s): Echenique JR, Dorsey CW, Patrito LC, Petroni A, Tolmasky ME, Actis LA.
Title: Acinetobacter baumannii has two genes encoding glutathione-dependent formaldehyde dehydrogenase: evidence for differential regulation in response to iron.
PubMed: 11577159
MedLine:
Source:
Microbiology. 2001 Oct;147(Pt 10):2805-15.
Reference Type:Journal
Data:
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11577159
Homologs By Global Alignment
Gene ID:1693

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
2980 PA3629_tr translation of PA3629 370 99.72 99.99 0 1927.0
92905 gb|AAG07017.1|AE004783_2 (AE004783) alcohol dehydrogenase class III [Pseudomonas aeruginosa PAO1] 370 99.72 99.99 0 1927.0
92906 emb|CAB64351.1| (AJ243941) putative formaldehyde dehydrogenase (glutathione-dependent) [Pseudomonas sp.] 372 87.63 94.62 2 1735.0
92907 gb|AAN67237.1|AE016350_10 (AE016780) D-isomer specific 2-hydroxyacid dehydrogenase family protein [Pseudomonas putida KT2440] 371 85.71 94.07 1 1698.0
92908 gb|AAO55078.1| (AE016861) alcohol dehydrogenase, class III [Pseudomonas syringae pv. tomato str. DC3000] 370 83.24 93.24 0 1658.0
GC ORFID: 44695How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA3629Glimmer Score:
Start: 3460914Stop: 3459802
Length: 1113
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA3629 translation of PA3629Homolog Bit Score 746.0
Other Homologs: psyr_15may02_Scaffold3_revised_gene4644 (ORF: BLASTX 643.0), psyr_15may02_Scaffold7_revised_gene7186 (ORF: BLASTX 585.0), t_PA3629 (ORF: GLIMMER)
GC ORF Sequence
ATGATCAAGTCCCGTGCCGCCGTCGCCTTCGCCCCCAACAAGCCGTTGGAAATCGTCGAGGTGGATGTGGCG
CCGCCGCAGAAGGGCGAGGTACTGGTGCGCATCGTCGCCACCGGCGTCTGCCATACCGATGCGTACACCCTG
TCCGGCCAGGATTCCGAGGGGGTGTTCCCGTGCATTCTGGGCCACGAAGGTGGCGGCATCGTCGAAGCGGTG
GGCGAGGGCGTGACCTCCCTGCAGGTGGGCGATCATGTCATCCCGCTGTACACCGCCGAGTGCGGCAAGTGC
AAATTCTGCCTGTCCGGCAAGACCAACCTCTGCCAGGCCGTGCGCGCCACCCAGGGCAAGGGCCTGATGCCC
GACGGCACCAGCCGTTTCTCCTACAAGGGCGAGCCGGTCTTCCACTACATGGGCTGCTCGACCTTCTCCGAA
TACACCGTGCTGCCGGAAATCTCCCTGGCGAAGATTCCCAAGGACGCGCCGCTGGATAAGGTCTGCCTGCTT
GGTTGCGGCGTCACCACCGGGATCGGCGCCGTGCTGAATACCGCCAAGGTGGAAGAGGGCGCTACCGTTGCC
ATCTTCGGCCTGGGCGGTATCGGCCTGGCGGCGATCATCGGGGCGAAGATGGCCAAGGCCGCGCGCATCATC
GCGGTCGACATCAACCCGGGCAAGTTCGACATCGCCAGGGAGCTGGGCGCCACCGACTTCATCAATCCGAAG
GACTACGACAAGCCGATCCAGGACGTCATCGTCGAACTGACCGATGGCGGCGTCGACTACTCCTTCGAGTGC
GTCGGCAACGTGCAGTTGATGCGCGCCGCGCTGGAATGCTGCCACAAGGGCTGGGGCGAGTCGGTGATCATC
GGTGTCGCCGGCGCCGGCCAGGAAATCAGCACCCGGCCGTTCCAACTGGTCACCGGCCGCGTCTGGCGCGGT
TCGGCGTTCGGCGGGGTGCGCGGGCGCAGCGAGTTGCCGAGCTATGTCGAGAAGGCGCAGAAGGGCGAGATC
CCGCTGGATACCTTCATCACCCACACCATGGGGCTGGAGGACATCAACGAGGCCTTCGAGCTGATGCACGAA
GGCAAGAGCATCCGCACCGTCATTCATTACTGA