ViewGene
Locus Name:
GeneID:
Location:

GeneID:1692
TrivialName: PA14_18660
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_18660
PAO1 Ortholog Locus:PA3532
Sequence Length:1152
Protein Length:383
Start: 1606157
Stop: 1607308
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06920.1|AE004773_9 (AE004773) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 383/383 (100%), Positives = 383/383 (100%)
Sequence:
ATGTCGGAAGTCAATCCTCGCCAGGGTCGCCTGGCTTGCATCTATTTCTTCGCCATGGCCGGGCTGGTCATC
GGCAACCTGATGGGACGCATCCCGGCGCTCAAGGAGCAGACCCAGCTGGACGAGCGCGCGCTCGGCCAGGCC
CTGCTCGGCGTCGGGGTCGGCGCGCTCACGGCGTTCCCGTTGAGCGGTTTTCTGGTCCAGCGCATCGGCAGT
CGCAGCGTAGTGATCGGCGGTTGCCTGATCATGCTGCTGGTGTTTCCGCTGCTCGGCCTGAGCCAGGGCTGG
TGGCAACTGGCCCTGGCCTTCTACGTGCTGGGCGTGAGCTTCGCCGGGATGGACGTGGCGATGAACATCCAG
GCGGTGGATGTCGAGCGCCTGCTCGGCAAGCCCTGCATGTCCATGCTGCATGGCATGTACAGCCTCGGCTGC
TTGGTCGGTGCGTTGAGCGCCGCGGCCCTGGCCGGACTGACGCCGTTCTGGCATTTCCTCATTCTCACCGCA
CTCGGCCTGCTGAGCCTGCCATTCTTCGTACGCGCGTTGCTTCCGCCGGACCCGAGCAAGGCGGGCGCGCGC
AAGGGCGGCGGCTTCACCTTGCCGCCGCGGGCCTTGCTCGGCCTGGGCCTGCTGATTCTCTGCGCGTTCGTT
TCCGAGGGCGGCGTGGCTGACTGGAGCGCGCTGTTCCTGCACAGCGTTCTGGATGCTTCCGAGCGGGTGGCG
GCGCTGGGCTTCGCGGCGTTTTCCGCGGCGATGGTGGTGGGGCGCCTGTTCGGCGACCGCCTGCGCGGACGC
ATCGACGATGCGCCATTGCTGCGCGGCCTGGGTTCGCTGGCCACGCTGGGCATGCTGGTAGCGCTGTTCAGC
CCCTGGCCGGCGCTGAGCATCGCCGGTTTCGGGGTGGTTGGCCTGGGGCTGTCGGTGATGGTGCCGATCGTG
ATCAGCGCCGCCGGCAACCAGCCGGGCATCGATCCGGTGATCGGGGTCGCCGCCGTCTCTACCGTGGGGTAT
GGCGGACTGCTGATGGGGCCGCCGCTGATCGGCCTGCTGGCCCACGAGATCGGCCTGCGCTGGGCATTGCTG
GTGCTGGTCGGTCTTTGCCTGTTGCTGGCCCTGCGCGCCGATCTGGTCCGGCGCAGGCCGCGCAGCGCCTGA
Translation:
MSEVNPRQGRLACIYFFAMAGLVIGNLMGRIPALKEQTQLDERALGQALLGVGVGALTAFPLSGFLVQRIGS
RSVVIGGCLIMLLVFPLLGLSQGWWQLALAFYVLGVSFAGMDVAMNIQAVDVERLLGKPCMSMLHGMYSLGC
LVGALSAAALAGLTPFWHFLILTALGLLSLPFFVRALLPPDPSKAGARKGGGFTLPPRALLGLGLLILCAFV
SEGGVADWSALFLHSVLDASERVAALGFAAFSAAMVVGRLFGDRLRGRIDDAPLLRGLGSLATLGMLVALFS
PWPALSIAGFGVVGLGLSVMVPIVISAAGNQPGIDPVIGVAAVSTVGYGGLLMGPPLIGLLAHEIGLRWALL
VLVGLCLLLALRADLVRRRPRSA*
AnnotationID:1701GeneID:1692
AnnotatorUID: diggins
Modification Date/Time: 2005-04-19 17:05:55
Gene Name:
Confidence Code:3
GeneProduct:putative integral membrane transport protein
Cell Localization:()
Synonyms:PA3532
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(15) Membrane proteins
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>emb|CAC47851.1| (AL591793) PUTATIVE TRANSPORT PROTEIN [Sinorhizobium meliloti]
          Length = 379

 Score =  222 bits (565), Expect = 3e-57
 Identities = 133/348 (38%), Positives = 188/348 (54%), Gaps = 2/348 (0%)

>emb|CAB95286.1| (AL939107) putative integral membrane transport protein
           [Streptomyces coelicolor A3(2)]
          Length = 390

 Score =  222 bits (565), Expect = 3e-57
 Identities = 148/378 (39%), Positives = 198/378 (52%), Gaps = 13/378 (3%)








 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:3387




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20534




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32031




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1692_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1692
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2979
                           PA3532_tr
                           translation of PA3532
                           383
                           99.99
                           99.99
                           0
                           1927.0
     

     
     
92903
                           gb|AAG06920.1|AE004773_9
                           (AE004773) hypothetical protein PA3532 [Pseudomonas aeruginosa PAO1]
                           383
                           99.99
                           99.99
                           0
                           1927.0
     

     
     
92904
                           gb|AAF12043.1|AE002079_8
                           (AE002079) transport protein, putative [Deinococcus radiodurans] [Deinococcus radiodurans R1]
                           483
                           33.12
                           43.06
                           112
                           566.0
     

     






      

          
GC ORFID: 44694How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3532Glimmer Score: 

          
Start: 3347777Stop: 3346626

          
Length: 1152


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3532 translation of PA3532Homolog Bit Score 746.0

          
Other Homologs:  t_PA3532 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTCGGAAGTCAATCCTCGCCAGGGTCGCCTGGCTTGCATCTATTTCTTCGCCATGGCCGGGCTGGTCATC 
GGCAACCTGATGGGACGCATCCCGGCGCTCAAGGAGCAGACCCAGCTGGACGAGCGCGCGCTCGGCCAGGCC 
CTGCTCGGCGTCGGGGTCGGCGCGCTCACGGCGTTCCCGTTGAGCGGTTTTCTGGTCCAGCGCATCGGCAGT 
CGCAGCGTAGTGATCGGCGGTTGCCTGATCATGCTGCTGGTGTTTCCGCTGCTCGGCCTGAGCCAGGGCTGG 
TGGCAACTGGCCCTGGCCTTCTACGTGCTGGGCGTGAGCTTCGCCGGGATGGACGTGGCGATGAACATCCAG 
GCGGTGGATGTCGAGCGCCTGCTCGGCAAGCCCTGCATGTCCATGCTGCATGGCATGTACAGCCTCGGCTGC 
TTGGTCGGTGCGTTGAGCGCCGCGGCCCTGGCCGGACTGACGCCGTTCTGGCATTTCCTCATTCTCACCGCA 
CTCGGCCTGCTGAGCCTGCCATTCTTCGTACGCGCGTTGCTTCCGCCGGACCCGAGCAAGGCGGGCGCGCGC 
AAGGGCGGCGGCTTCACCTTGCCGCCGCGGGCCTTGCTCGGCCTGGGCCTGCTGATTCTCTGCGCGTTCGTT 
TCCGAGGGCGGCGTGGCTGACTGGAGCGCGCTGTTCCTGCACAGCGTTCTGGATGCTTCCGAGCGGGTGGCG 
GCGCTGGGCTTCGCGGCGTTTTCCGCGGCGATGGTGGTGGGGCGCCTGTTCGGCGACCGCCTGCGCGGACGC 
ATCGACGATGCGCCATTGCTGCGCGGCCTGGGTTCGCTGGCCACGCTGGGCATGCTGGTAGCGCTGTTCAGC 
CCCTGGCCGGCGCTGAGCATCGCCGGTTTCGGGGTGGTTGGCCTGGGGCTGTCGGTGATGGTGCCGATCGTG 
ATCAGCGCCGCCGGCAACCAGCCGGGCATCGATCCGGTGATCGGGGTCGCCGCCGTCTCTACCGTGGGGTAT 
GGCGGACTGCTGATGGGGCCGCCGCTGATCGGCCTGCTGGCCCACGAGATCGGCCTGCGCTGGGCATTGCTG 
GTGCTGGTCGGTCTTTGCCTGTTGCTGGCCCTGCGCGCCGATCTGGTCCGGCGCAGGCCGCGCAGCGCCTGA