ViewGene

Locus Name:
GeneID:
Location:

GeneID:1691
TrivialName: PA14_21300
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_21300
PAO1 Ortholog Locus:PA3303
Sequence Length:1176
Protein Length:391
Start: 1846286
Stop: 1845111
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06691.1|AE004752_7 (AE004752) probable MFS transporter [Pseudomonas aeruginosa PAO1]
Identities = 388/391 (99%), Positives = 388/391 (99%)
Sequence:
ATGGACCTTCGCTTGCTGTTGCTATCCCTGACCACCTTCGCCGCCGGCCTGGCGGAAAGCATCCTGATCGGC
ATCCTGCCGCCCCTGGCCGAAGACCTGCGGGTCTCCATCAGCCTGGCCGGCCAGCTCACTACCCTGTTCTCC
CTCGGCTTCGCCCTCGCCGCACCGCTGCTCGGCTGGCTGACCCGGCGCATCGAACGCCGCCGCCTGCTGCTG
GCGACCCTGCTGCTGTTCGCCCTCAGCAACGCGCTCGCCGCCCTCGCTCCGGGCTATCTCGGCCTGCTCCTG
GCTCGCCTGGGCATGTCGGCCTGTTGCGGGCTGCTGATCGTCCTCGCCAGCCTGCTCGCCGCCGAGCTGGCC
GCCCCGGCCCAGCGCGGCCGGGCGATCGGCCTGATCTTCATGGGCATCAGCGGTTCGCTGGTGTTCGGCGTG
CCACTGGGCGTACAGATCAGCGACTGGTTCGGCTGGCGCTGGATCTTCGCCGGCATCGCGGTCTATTCGCTG
CCCTTGTGCCTGCTGCTCTGGCGCTACCTGCCGCAACGCCAGGCCGGCGACCTGCCCGGCCGCGAAGGCTAT
CTGCGGCAGTTGCGCCAGCCCGCGCTGTGGCTCGCGCAACTGGTATCGATCCTGTTGCTCGGCGGGCACTTC
ACCCTGTTCGCCTATTTCACCCCGTACCTGGCGAGCATGGCCGGTATTCGCTCGCCCGGCGAGATCAGCCTG
ATCCTCCTGCTGATCGGCCTGGCAGCGCTGAGCGGCGGCTATATCGGCGGCTGGCTGGCCGACCGCCTCGGC
CACCGGCGCGCCCTGCGTCTGGTGCCGGCGGCCTTCGCCCTGGCGCTGGCGGCGGTGCCGCTGAGCCTGGGC
AGCATTGGGTTCCTGCCGGTACTGATGGTCTGGAGCGCGATCAGTTGGATGATCTCGCCGGTGGTGCAGAGC
TTCCTGCTGCGCAGCGATCCGGCCAGCGGTTCCGCCGGCGTCGCCCTGAACACCTCGGCCATGCACCTGGGC
GTGGGCCTCGGCGCGGCGCTGGGCGGCCTGGTGGTGGCGGCACTGGGAGTCGCCGCGACGCCCTGGGTCGGC
CTCGCCCTGGTGCTGGCGGCACTGGCCTGCGCGCTTGGCGCCAGCACGCTGGATGGCGCCACGCAAGCGCTG
CCGCTCAGTCCCCCTGCACGGTGA
Translation:
MDLRLLLLSLTTFAAGLAESILIGILPPLAEDLRVSISLAGQLTTLFSLGFALAAPLLGWLTRRIERRRLLL
ATLLLFALSNALAALAPGYLGLLLARLGMSACCGLLIVLASLLAAELAAPAQRGRAIGLIFMGISGSLVFGV
PLGVQISDWFGWRWIFAGIAVYSLPLCLLLWRYLPQRQAGDLPGREGYLRQLRQPALWLAQLVSILLLGGHF
TLFAYFTPYLASMAGIRSPGEISLILLLIGLAALSGGYIGGWLADRLGHRRALRLVPAAFALALAAVPLSLG
SIGFLPVLMVWSAISWMISPVVQSFLLRSDPASGSAGVALNTSAMHLGVGLGAALGGLVVAALGVAATPWVG
LALVLAALACALGASTLDGATQALPLSPPAR*
AnnotationID:1700GeneID:1691
AnnotatorUID: diggins
Modification Date/Time: 2005-04-15 08:08:07
Gene Name:
Confidence Code:3
GeneProduct:putative MFS transporte
Cell Localization:()
Synonyms:PA3303
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2814
Secondary Functional Category(ies):carbon compound metabolism
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAP28925.1| (AE017040) major facilitator family transporter [Bacillus anthracis
           str. Ames]
          Length = 414

 Score =  254 bits (649), Expect = 6e-67
 Identities = 143/383 (37%), Positives = 223/383 (58%), Gaps = 2/383 (0%)

Structural Features:
COG2814, AraJ, Arabinose efflux permease 
[Carbohydrate transport and metabolism]
CD-Length = 394 residues,  97.5% aligned
Score =  212 bits (541), Expect = 7e-56
Identities = 175/386 (45%), Positives = 225/386 (58%), Gaps = 5/386 (1%)
Genomic Context:
Comment:
ReferenceID:3385
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:20532
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:32249
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:1691_cdd.html
URL:
Homologs By Global Alignment
Gene ID:1691

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
2978 PA3303_tr translation of PA3303 391 99.23 99.23 0 1925.0
92902 gb|AAG06691.1|AE004752_7 (AE004752) probable MFS transporter [Pseudomonas aeruginosa PAO1] 391 99.23 99.23 0 1925.0
GC ORFID: 44693How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA3303Glimmer Score:
Start: 3107645Stop: 3108820
Length: 1176
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA3303 translation of PA3303Homolog Bit Score 746.0
Other Homologs: t_PA3303 (ORF: GLIMMER)
GC ORF Sequence
ATGGACCTTCGCTTGCTGTTGCTATCCCTGACCACCTTCGCCGCCGGCCTGGCGGAAAGCATCCTGATCGGC
ATCCTGCCGCCCCTGGCCGAAGACCTGCGGGTCTCCATCAGCCTGGCCGGCCAGCTCACTACCCTGTTCTCC
CTCGGCTTCGCCCTCGCCGCACCGCTGCTCGGCTGGCTGACCCGGCGCATCGAACGCCGCCGCCTGCTGCTG
GCGACCCTGCTGCTGTTCGCCCTCAGCAACGCGCTCGCCGCCCTCGCTCCGGGCTATCTCGGCCTGCTCCTG
GCTCGCCTGGGCATGTCGGCCTGTTGCGGGCTGCTGATCGTCCTCGCCAGCCTGCTCGCCGCCGAGCTGGCC
GCCCCGGCCCAGCGCGGCCGGGCGATCGGCCTGATCTTCATGGGCATCAGCGGTTCGCTGGTGTTCGGCGTG
CCACTGGGCGTACAGATCAGCGACTGGTTCGGCTGGCGCTGGATCTTCGCCGGCATCGCGGTCTATTCGCTG
CCCTTGTGCCTGCTGCTCTGGCGCTACCTGCCGCAACGCCAGGCCGGCGACCTGCCCGGCCGCGAAGGCTAT
CTGCGGCAGTTGCGCCAGCCCGCGCTGTGGCTCGCGCAACTGGTATCGATCCTGTTGCTCGGCGGGCACTTC
ACCCTGTTCGCCTATTTCACCCCGTACCTGGCGAGCATGGCCGGTATTCGCTCGCCCGGCGAGATCAGCCTG
ATCCTCCTGCTGATCGGCCTGGCAGCGCTGAGCGGCGGCTATATCGGCGGCTGGCTGGCCGACCGCCTCGGC
CACCGGCGCGCCCTGCGTCTGGTGCCGGCGGCCTTCGCCCTGGCGCTGGCGGCGGTGCCGCTGAGCCTGGGC
AGCATTGGGTTCCTGCCGGTACTGATGGTCTGGAGCGCGATCAGTTGGATGATCTCGCCGGTGGTGCAGAGC
TTCCTGCTGCGCAGCGATCCGGCCAGCGGTTCCGCCGGCGTCGCCCTGAACACCTCGGCCATGCACCTGGGC
GTGGGCCTCGGCGCGGCGCTGGGCGGCCTGGTGGTGGCGGCACTGGGAGTCGCCGCGACGCCCTGGGTCGGC
CTCGCCCTGGTGCTGGCGGCACTGGCCTGCGCGCTTGGCGCCAGCACGCTGGATGGCGCCACGCAAGCGCTG
CCGCTCAGTCCCCCTGCACGGTGA