ViewGene
Locus Name:
GeneID:
Location:

GeneID:1690
TrivialName: PA14_43270
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_43270
PAO1 Ortholog Locus:PA1643
Sequence Length:1110
Protein Length:369
Start: 3855216
Stop: 3854107
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05032.1|AE004592_3 (AE004592) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 369/369 (100%), Positives = 369/369 (100%)
Sequence:
ATGCGCGACAACACCCAGCACTACCGCGAGCTGTTTCTCGACGATATCCCCCTGATGGATGTGCGCGCCCCG
GTGGAGTACCACAAGGGCGCCTTTCCCAACACGGTCAACCGGCCGCTGATGAACGACATCGAGCGGCAGAAG
GTCGGCACCAGCTATAAGCAGCACGGCCAGCAGGCCGCCATCGCCCTTGGTCACGAACTGGTCTGCGGGGCG
CTCAAGGCCGAACGGCTGGCGGCCTGGAAAGCCTTCGCCGAAGCCAACCCGAACGGCTACCTGTATTGCTTC
CGCGGCGGCCTGCGCTCGCAGATCGTCCAGCAGTGGCTGAAGCAGGACGCCGGCATCGACTACCCACGGGTG
ATCGGCGGCTACAAGGCGTTGCGCAACTTCCTTTTCGAAACCACCCGCGCGGCGGTCGACGAGTGCGATTTC
GTGCTGGTCGGCGGCCTCACCGGTTGCGGCAAGACCGAGGTGATCGCGGCGCTGGACAACAGCCTCGATCTC
GAAGGCCACGCCAACCACCGCGGCTCCAGCTTTGGCCGGCGAGCCACGCCGCAGCCGGCGCAGATCGACTTC
GAGAACCGCCTGGCCATCGACATCCTGAAGAAGCGTCATCGTGGCGTCGGCCAGTTCGTCCTCGAGGACGAG
GGGCGGATCGTCGGCAGCTGCTCCTTGCCGCTGGAGCTGTACCAGGGCATGCAGGGCTACCCGCTGGTCTGG
CTGGAGGATGCCTTCGAGCAGCGTGTCGAGCGTATCCTCAGGGACTACGTGATCGACCTGCGCAGCGAGTTC
GAGCGCGTGGTGGGCGTGGAGGAGGGCTTCGCCGCCTTCTCCGCCTACCTGCAGAAGAGCCTCGCCGGCATC
GTCAAGCGCCTCGGCGGCGAGCGCTACCAGCGGCTGGCGGCGATCCTCGTGCAGGCGCTGGAAGAGCAGGGC
CGCGACGGCTCGGTGGATACCCATCGCGGCTGGATCGAGGGGCTGCTCAAGGAGTACTACGACCCGATGTAC
GCCTTCCAGCGGCAGAGCAAGGAAGACCGCGTCGAGTTCCGTGGCAACCAGGCCGAGGTGATCGGCTACCTG
CGCCAGCGTCAGGCGTTGCGGCCATCGTAG
Translation:
MRDNTQHYRELFLDDIPLMDVRAPVEYHKGAFPNTVNRPLMNDIERQKVGTSYKQHGQQAAIALGHELVCGA
LKAERLAAWKAFAEANPNGYLYCFRGGLRSQIVQQWLKQDAGIDYPRVIGGYKALRNFLFETTRAAVDECDF
VLVGGLTGCGKTEVIAALDNSLDLEGHANHRGSSFGRRATPQPAQIDFENRLAIDILKKRHRGVGQFVLEDE
GRIVGSCSLPLELYQGMQGYPLVWLEDAFEQRVERILRDYVIDLRSEFERVVGVEEGFAAFSAYLQKSLAGI
VKRLGGERYQRLAAILVQALEEQGRDGSVDTHRGWIEGLLKEYYDPMYAFQRQSKEDRVEFRGNQAEVIGYL
RQRQALRPS*
AnnotationID:1699GeneID:1690
AnnotatorUID: diggins
Modification Date/Time: 2005-02-27 16:04:03
Gene Name:
Confidence Code:3
GeneProduct:putative ATPase
Cell Localization:()
Synonyms:ybbB
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:putative capsule anchoring protein
Functional Category Confidence Code:5
COGs:COG2603
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN53282.1|AE015469_6 (AE015469) ybbB protein [Shewanella oneidensis MR-1]
          Length = 376

 Score =  338 bits (868), Expect = 2e-92
 Identities = 171/347 (49%), Positives = 227/347 (65%), Gaps = 1/347 (0%)

>gb|AAL19467.1| (AE008719) putative ATPase [Salmonella typhimurium LT2]
          Length = 364

 Score =  322 bits (824), Expect = 3e-87
 Identities = 170/361 (47%), Positives = 224/361 (62%), Gaps = 3/361 (0%)

>gb|AAC73605.1| (AE000156) putative capsule anchoring protein [Escherichia coli
           K12]
          Length = 364

 Score =  311 bits (797), Expect = 4e-84
 Identities = 170/363 (46%), Positives = 223/363 (61%), Gaps = 3/363 (0%)








 
Structural Features:
COG2603, COG2603, Predicted ATPase
CD-Length = 334 residues, 100.0% aligned
Score =  430 bits (1107), Expect = 1e-121
Identities = 186/343 (54%), Positives = 226/343 (65%), Gaps = 10/343 (2%)






   
Genomic Context:






   
Comment:


















    ReferenceID:3383




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20530




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37223




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1690_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1690
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2977
                           PA1643_tr
                           translation of PA1643
                           369
                           99.99
                           99.99
                           0
                           1926.0
     

     
     
92886
                           gb|AAG05032.1|AE004592_3
                           (AE004592) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           369
                           99.99
                           99.99
                           0
                           1926.0
     

     
     
92887
                           gb|AAN66447.1|AE016274_4
                           (AE016777) conserved hypothetical protein [Pseudomonas putida KT2440]
                           370
                           69.45
                           82.43
                           1
                           1364.0
     

     
     
92888
                           gb|AAO54336.1|
                           (AE016858) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           369
                           67.75
                           79.94
                           3
                           1326.0
     

     
     
92889
                           emb|CAE35102.1|
                           (BX640451) conserved hypothetical protein [Bordetella bronchiseptica] [Bordetella bronchiseptica RB50]
                           369
                           64.22
                           76.96
                           1
                           1243.0
     

     






      

          
GC ORFID: 44692How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1643Glimmer Score: 

          
Start: 1098693Stop: 1099802

          
Length: 1110


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA1643 translation of PA1643Homolog Bit Score 746.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene3521 (ORF: BLASTX 514.0), t_PA1643 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCGCGACAACACCCAGCACTACCGCGAGCTGTTTCTCGACGATATCCCCCTGATGGATGTGCGCGCCCCG 
GTGGAGTACCACAAGGGCGCCTTTCCCAACACGGTCAACCGGCCGCTGATGAACGACATCGAGCGGCAGAAG 
GTCGGCACCAGCTATAAGCAGCACGGCCAGCAGGCCGCCATCGCCCTTGGTCACGAACTGGTCTGCGGGGCG 
CTCAAGGCCGAACGGCTGGCGGCCTGGAAAGCCTTCGCCGAAGCCAACCCGAACGGCTACCTGTATTGCTTC 
CGCGGCGGCCTGCGCTCGCAGATCGTCCAGCAGTGGCTGAAGCAGGACGCCGGCATCGACTACCCACGGGTG 
ATCGGCGGCTACAAGGCGTTGCGCAACTTCCTTTTCGAAACCACCCGCGCGGCGGTCGACGAGTGCGATTTC 
GTGCTGGTCGGCGGCCTCACCGGTTGCGGCAAGACCGAGGTGATCGCGGCGCTGGACAACAGCCTCGATCTC 
GAAGGCCACGCCAACCACCGCGGCTCCAGCTTTGGCCGGCGAGCCACGCCGCAGCCGGCGCAGATCGACTTC 
GAGAACCGCCTGGCCATCGACATCCTGAAGAAGCGTCATCGTGGCGTCGGCCAGTTCGTCCTCGAGGACGAG 
GGGCGGATCGTCGGCAGCTGCTCCTTGCCGCTGGAGCTGTACCAGGGCATGCAGGGCTACCCGCTGGTCTGG 
CTGGAGGATGCCTTCGAGCAGCGTGTCGAGCGTATCCTCAGGGACTACGTGATCGACCTGCGCAGCGAGTTC 
GAGCGCGTGGTGGGCGTGGAGGAGGGCTTCGCCGCCTTCTCCGCCTACCTGCAGAAGAGCCTCGCCGGCATC 
GTCAAGCGCCTCGGCGGCGAGCGCTACCAGCGGCTGGCGGCGATCCTCGTGCAGGCGCTGGAAGAGCAGGGC 
CGCGACGGCTCGGTGGATACCCATCGCGGCTGGATCGAGGGGCTGCTCAAGGAGTACTACGACCCGATGTAC 
GCCTTCCAGCGGCAGAGCAAGGAAGACCGCGTCGAGTTCCGTGGCAACCAGGCCGAGGTGATCGGCTACCTG 
CGCCAGCGTCAGGCGTTGCGGCCATCGTAG