ViewGene
Locus Name:
GeneID:
Location:

GeneID:169
TrivialName: PA14_03980
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_03980
PAO1 Ortholog Locus:PA0305
Sequence Length:2388
Protein Length:795
Start: 360835
Stop: 358448
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03694.1|AE004468_6 (AE004468) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 790/795 (99%), Positives = 792/795 (99%)
Sequence:
ATGAAACGCACCCTGACCGTGATCGCCGTGGCGGTCGCCGCCGCGGCTGCCGGCGGCGCCTGGTACCTCCAT
GCCAAGCAGCCGCTCCGCAACGGCTCGCTCGCCCTGGCCCACCTGCAGGCGCCGGTCGACGTGCGCTACGAC
GAGCGCGGGGTTCCGCACCTGTATGCGCAGAACCAGACCGACCTCTACCGCGCCCTCGGCTACGTGCACGCC
CAGGACCGCCTGTTCCAGATGGAAATGCTGCGGCGCCTGGCGCGCGGCGAGCTGGCCGAAGTGCTCGGACCC
AAGCTGGTGGATACCGACCGTCTGTTCCGCACCCTGCGCATCCGCGACCACGCCGCCGAATACAGCGCCCGC
CAGGACAAGCAGTCGCAGCCCTGGAAGGTGCTGGAGGCCTACCTGGACGGGGTCAACCAGTTCCAGGAAAAC
AACCCGGCGCCGCTCGAATTCGACCTGCTGGGCATACCCAGGCGTCCCTTCACCCCCGAAGACACCCTGAGC
ATCGCCGGCTACATGGCCTACAGCTTCGCCGCCGCCTTCCGCACCGAGCCGGTGCTGACCTACATCCGCGAC
GAACTGGGCAGCGACTACCTGCGCATCTTCGATCTCGACTGGCATCCGCAGGGCGTGCTGACGCCCTCCGGC
GCACTGGGCGCCGGCGACTGGAAGGACCTTGGCGCCCTCGCCCGTCTCAGCCAGCAGGCCCTGGAGGACGCC
GGCCTGCCGCAGTTCGAGGGCAGCAACGCCTGGGTCGTCGCCGGCAGCCGCACCGCCAGCGGCAAGCCCCTG
CTGGCCGGCGACCCGCATATCCGCTTCGCCGCGCCGGCGGTATGGTACGAGGCCCAGCTGAGCGCGCCCGGT
TTCGAACTCTATGGCCACCACCAGGCGCTCAACCCCTTCGCCTCGCTGGGCCACAACCGCGCGTTCGGCTGG
AGCCTGACGATGTTCCAGAACGACGACCTCGACCTGGTCGCCGAGAAGGTCAACCCGGACAACCCCAACCAG
GTCTGGTACCAGGGCAAATGGGTCGACCTGCAGAGCGAGGAGCAGGAAATCGCGGTCAAGGGCGCTGCGCCG
GTGAAGCTCACCCTGCGCCGCTCGCCCCACGGTCCGATCGTCAACGACGCCCTCGGCGCCAGCTCCGGCAAG
ACCCCGATCGCCATGTGGTGGGCTTTCCTCGAGACCGAGAACCCGGTGCTCGACGCCTTCTACCAGCTGAAT
CGCGCCGATACCCTGGCCAAGGCCCGCGCGGCGGCCTCGAAGATCCATTCGCCAGGACTCAACCTGGTCTGG
GCCAATGCCGCCGGCGATATCGGCTGGTGGGCCTCGGCGGCCCTGCCGAAGCGGCCGGAGGGAGTGAACCCG
AGCTTCATCCTCGACGGCAGCAAGGGCGAGGCGGACAAGTCCGGCTTCTATCCGTTCGCCGACAACCCGCAG
GAGGAAAACCCGGCGCGCGGCTACATCGTCTCCGCCAACTTCCAGCCGGTCCCGGCCAATGGCCGGCCGATT
CCCGGCTACTACAACCTGGCGGACCGCGGCCAGTGGCTGGATACCCAACTGGCCGACCGCGGCACCAAATGG
AACCTGGACAACAGCCGCGCGCTGCAACTCGGCAATCGCACCGGCTACGCGCCGCGCCTGCTCGCACCCTTG
CTGCCGGTCCTGCGCGAGGTGGTCGACGACGCCGAAGGCAAGCGCCTGGTCGAGCAACTGGCGGCCTGGAAG
GGCGACTACCCGGTCGACTCGACCGCCGCCACGCTGTTCAACCAGTTGCTGTTCCAGATTGCCGAGAGCGCC
TTGCACGACGAACTGGGCGATGCCTTCTTCGACAGTCTGATCGCCACCCGCGCCATCGACAGCGCGCTGCCT
CGGCTGGCTGGCGACGCCGACTCGCCCTGGTGGGACGACCGCCGCACAGAACGCCGGGAAACCCGCGCGGAT
ATCGTCAGGGCCGCCTGGAACGCCTCCCTCGCGCATCTGCGCGGCACCCTCGGCAACGACCCGTCCGGCTGG
CTGTGGGGCAAGGCGCATACCCTGACCCACGAGCACGCCCTGGGCCAGCAAGCGCTGCTCAAGCGCCTTCTC
AACGTCGGTCCGTTCGCCGCCCCCGGCACCCACGAGGTACCGAACAACCTGTCGGCGAAGATCGGCCCGGCC
CCCTGGGCGGTCACCTACGGCCCATCGACCCGGCGCCTGGTGGACTTCGCCGACCCGACCCACAGCCTTGGC
ATCAACCCGGTCGGGCAGAGCGGCGTGCCCTTCGACGGCCACTACGACGACCAGGCCGAGGCCTACATCGAG
GGCCACTACCTGCCGCAGCACTACGAGGAAAACGAGGTGAAGGCGAACAGCAAGGGCGTGCTGGTGCTGGAA
CCGAAGCGCTGA
Translation:
MKRTLTVIAVAVAAAAAGGAWYLHAKQPLRNGSLALAHLQAPVDVRYDERGVPHLYAQNQTDLYRALGYVHA
QDRLFQMEMLRRLARGELAEVLGPKLVDTDRLFRTLRIRDHAAEYSARQDKQSQPWKVLEAYLDGVNQFQEN
NPAPLEFDLLGIPRRPFTPEDTLSIAGYMAYSFAAAFRTEPVLTYIRDELGSDYLRIFDLDWHPQGVLTPSG
ALGAGDWKDLGALARLSQQALEDAGLPQFEGSNAWVVAGSRTASGKPLLAGDPHIRFAAPAVWYEAQLSAPG
FELYGHHQALNPFASLGHNRAFGWSLTMFQNDDLDLVAEKVNPDNPNQVWYQGKWVDLQSEEQEIAVKGAAP
VKLTLRRSPHGPIVNDALGASSGKTPIAMWWAFLETENPVLDAFYQLNRADTLAKARAAASKIHSPGLNLVW
ANAAGDIGWWASAALPKRPEGVNPSFILDGSKGEADKSGFYPFADNPQEENPARGYIVSANFQPVPANGRPI
PGYYNLADRGQWLDTQLADRGTKWNLDNSRALQLGNRTGYAPRLLAPLLPVLREVVDDAEGKRLVEQLAAWK
GDYPVDSTAATLFNQLLFQIAESALHDELGDAFFDSLIATRAIDSALPRLAGDADSPWWDDRRTERRETRAD
IVRAAWNASLAHLRGTLGNDPSGWLWGKAHTLTHEHALGQQALLKRLLNVGPFAAPGTHEVPNNLSAKIGPA
PWAVTYGPSTRRLVDFADPTHSLGINPVGQSGVPFDGHYDDQAEAYIEGHYLPQHYEENEVKANSKGVLVLE
PKR*
AnnotationID:179GeneID:169
AnnotatorUID: diggins
Modification Date/Time: 2005-03-24 07:07:35
Gene Name:
Confidence Code:3
GeneProduct:putative penicillin amidase
Cell Localization:()
Synonyms:PA0305
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(8) Central intermediary metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam01804
Secondary Functional Category(ies):antibiotic resistance and susceptibility
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO58726.1| (AE016875) penicillin amidase family protein [Pseudomonas syringae
           pv. tomato str. DC3000]
          Length = 795

 Score = 1165 bits (3014), Expect = 0.0
 Identities = 539/793 (67%), Positives = 643/793 (81%)

>gb|AAN70729.1|AE016716_8 (AE016793) penicillin amidase family protein [Pseudomonas putida
           KT2440]
          Length = 788

 Score = 1103 bits (2852), Expect = 0.0
 Identities = 540/773 (69%), Positives = 620/773 (80%), Gaps = 7/773 (0%)








 
Structural Features:
pfam01804, Penicil_amidase, Penicillin amidase. 
CD-Length = 734 residues,  99.9% aligned
Score =  625 bits (1612), Expect = 9e-180
Identities = 299/753 (39%), Positives = 385/753 (51%), Gaps = 26/753 (3%)






   
Genomic Context:






   
Comment:


















    ReferenceID:341




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:17483




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33651




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:169_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:169
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
304
                           PA0305_tr
                           translation of PA0305
                           795
                           99.37
                           99.62
                           0
                           4199.0
     

     
     
19331
                           gb|AAG03694.1|AE004468_6
                           (AE004468) hypothetical protein PA0305 [Pseudomonas aeruginosa PAO1]
                           795
                           99.37
                           99.62
                           0
                           4199.0
     

     
     
19333
                           gb|AAN70729.1|AE016716_8
                           (AE016793) penicillin amidase family protein [Pseudomonas putida KT2440]
                           797
                           68.38
                           79.04
                           11
                           2864.0
     

     
     
19332
                           gb|AAO58726.1|
                           (AE016875) penicillin amidase family protein [Pseudomonas syringae pv. tomato str. DC3000]
                           795
                           67.79
                           80.88
                           0
                           3012.0
     

     






      

          
GC ORFID: 43171How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0305Glimmer Score: 

          
Start: 6162177Stop: 6159790

          
Length: 2388


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0305 translation of PA0305Homolog Bit Score 1622.0

          
Other Homologs:  t_PA0305 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAAACGCACCCTGACCGTGATCGCCGTGGCGGTCGCCGCCGCGGCTGCCGGCGGCGCCTGGTACCTCCAT 
GCCAAGCAGCCGCTCCGCAACGGCTCGCTCGCCCTGGCCCACCTGCAGGCGCCGGTCGACGTGCGCTACGAC 
GAGCGCGGGGTTCCGCACCTGTATGCGCAGAACCAGACCGACCTCTACCGCGCCCTCGGCTACGTGCACGCC 
CAGGACCGCCTGTTCCAGATGGAAATGCTGCGGCGCCTGGCGCGCGGCGAGCTGGCCGAAGTGCTCGGACCC 
AAGCTGGTGGATACCGACCGTCTGTTCCGCACCCTGCGCATCCGCGACCACGCCGCCGAATACAGCGCCCGC 
CAGGACAAGCAGTCGCAGCCCTGGAAGGTGCTGGAGGCCTACCTGGACGGGGTCAACCAGTTCCAGGAAAAC 
AACCCGGCGCCGCTCGAATTCGACCTGCTGGGCATACCCAGGCGTCCCTTCACCCCCGAAGACACCCTGAGC 
ATCGCCGGCTACATGGCCTACAGCTTCGCCGCCGCCTTCCGCACCGAGCCGGTGCTGACCTACATCCGCGAC 
GAACTGGGCAGCGACTACCTGCGCATCTTCGATCTCGACTGGCATCCGCAGGGCGTGCTGACGCCCTCCGGC 
GCACTGGGCGCCGGCGACTGGAAGGACCTTGGCGCCCTCGCCCGTCTCAGCCAGCAGGCCCTGGAGGACGCC 
GGCCTGCCGCAGTTCGAGGGCAGCAACGCCTGGGTCGTCGCCGGCAGCCGCACCGCCAGCGGCAAGCCCCTG 
CTGGCCGGCGACCCGCATATCCGCTTCGCCGCGCCGGCGGTATGGTACGAGGCCCAGCTGAGCGCGCCCGGT 
TTCGAACTCTATGGCCACCACCAGGCGCTCAACCCCTTCGCCTCGCTGGGCCACAACCGCGCGTTCGGCTGG 
AGCCTGACGATGTTCCAGAACGACGACCTCGACCTGGTCGCCGAGAAGGTCAACCCGGACAACCCCAACCAG 
GTCTGGTACCAGGGCAAATGGGTCGACCTGCAGAGCGAGGAGCAGGAAATCGCGGTCAAGGGCGCTGCGCCG 
GTGAAGCTCACCCTGCGCCGCTCGCCCCACGGTCCGATCGTCAACGACGCCCTCGGCGCCAGCTCCGGCAAG 
ACCCCGATCGCCATGTGGTGGGCTTTCCTCGAGACCGAGAACCCGGTGCTCGACGCCTTCTACCAGCTGAAT 
CGCGCCGATACCCTGGCCAAGGCCCGCGCGGCGGCCTCGAAGATCCATTCGCCAGGACTCAACCTGGTCTGG 
GCCAATGCCGCCGGCGATATCGGCTGGTGGGCCTCGGCGGCCCTGCCGAAGCGGCCGGAGGGAGTGAACCCG 
AGCTTCATCCTCGACGGCAGCAAGGGCGAGGCGGACAAGTCCGGCTTCTATCCGTTCGCCGACAACCCGCAG 
GAGGAAAACCCGGCGCGCGGCTACATCGTCTCCGCCAACTTCCAGCCGGTCCCGGCCAATGGCCGGCCGATT 
CCCGGCTACTACAACCTGGCGGACCGCGGCCAGTGGCTGGATACCCAACTGGCCGACCGCGGCACCAAATGG 
AACCTGGACAACAGCCGCGCGCTGCAACTCGGCAATCGCACCGGCTACGCGCCGCGCCTGCTCGCACCCTTG 
CTGCCGGTCCTGCGCGAGGTGGTCGACGACGCCGAAGGCAAGCGCCTGGTCGAGCAACTGGCGGCCTGGAAG 
GGCGACTACCCGGTCGACTCGACCGCCGCCACGCTGTTCAACCAGTTGCTGTTCCAGATTGCCGAGAGCGCC 
TTGCACGACGAACTGGGCGATGCCTTCTTCGACAGTCTGATCGCCACCCGCGCCATCGACAGCGCGCTGCCT 
CGGCTGGCTGGCGACGCCGACTCGCCCTGGTGGGACGACCGCCGCACAGAACGCCGGGAAACCCGCGCGGAT 
ATCGTCAGGGCCGCCTGGAACGCCTCCCTCGCGCATCTGCGCGGCACCCTCGGCAACGACCCGTCCGGCTGG 
CTGTGGGGCAAGGCGCATACCCTGACCCACGAGCACGCCCTGGGCCAGCAAGCGCTGCTCAAGCGCCTTCTC 
AACGTCGGTCCGTTCGCCGCCCCCGGCACCCACGAGGTACCGAACAACCTGTCGGCGAAGATCGGCCCGGCC 
CCCTGGGCGGTCACCTACGGCCCATCGACCCGGCGCCTGGTGGACTTCGCCGACCCGACCCACAGCCTTGGC 
ATCAACCCGGTCGGGCAGAGCGGCGTGCCCTTCGACGGCCACTACGACGACCAGGCCGAGGCCTACATCGAG 
GGCCACTACCTGCCGCAGCACTACGAGGAAAACGAGGTGAAGGCGAACAGCAAGGGCGTGCTGGTGCTGGAA 
CCGAAGCGCTGA