ViewGene

Locus Name:
GeneID:
Location:

GeneID: 1689

TrivialName: PA14_55900

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_55900

PAO1 Ortholog Locus: PA4303

Sequence Length: 1185

Protein Length: 394

Start: 4991814

Stop: 4990630

Strand: -

Type:

ChromosomeID: 2

Status: ACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAG07691.1|AE004846_8 (AE004846) hypothetical protein [Pseudomonas aeruginosa PAO1] Identities = 393/394 (99%), Positives = 393/394 (99%)

Sequence:

ATGAACCAGAACTTCGTGGCGCTGACCCAGCATCCCGGCGAACTCGACTGGTTGCAGAACAGCCTGGCGTCC
GCCGGCCAGGTGGTACCGGCAGGCAGCGCCAGCCTGGAGGAGCTGCTGGCGCTGCTCGACGTCACCGCCGCC
GGGGTGCTGTTCATCAGCCTCGGCAAGAGCAACCTGGTGTCCCAGGGCGCGCTGGTCGAGGGATTGGTATCG
GCGCGACCGATGCTCTCGGTGGTGGCCATCGGCGACGGCCTGGACAACCAGTTGGTGCTGGCGGCGATGCGC
GCCGGCGCGCGCGACTTCATCACCTACGGCGCCCGCACCAGCGAGCTGACCGGGCTGATCCGGCGCCTCGGC
GGACGCCTGCCCAGCGTGCCGGTGAGCGCGGCGCGCCAGGGCGAGCTGCTGACCCTGGTCAGCGCCCGACCG
GACGCCGACGGCGCCTTCGTCGCCTTGCACCTGGCCAAGGCGTTGCAGGAGCAGACGCCGAACCAGGTCCTG
CTGCTGGACGTCGGCCAGCCCACCGGCGAGGCGCTGGCGATCCTCGGCCTGGACTCGGCCTTCACCTTCAGC
GACGCCTTGCGCAACCTGCGGCGCCTCGACCAGACCCTGATCGACAGCGCCTTCACCCGCCTCGACAGCGGC
CTGCGGATACTCAGCCTGACCGACGAGCCCGGCGTGCTGGAGCGAGTCACCACCGCCGAACTCTATCTGTTG
CTGGGCAACCTGCGCGGGGCGTTCAGCCATGTGGTGGTCAACCTCACCGGGCTGCCCGAGGGCGAGCTGAGC
AACCAGTTGCTGGTGCAGGCCAACCGCGTGCTGTGGATGGTCGACCAGAGCGTGCCGTCCTGCAAGAAGGGT
CTGGAGCGCCTGCGCCGCCTGCGCGAGCGCAACCTGCCGTTGCCCTCCATCGAGTTGCTGATCGAGCGCTAC
CTGCCCAATGTGGCGCCGGACCAGCAGGCCCTCAGCCGGATGTTCGACCTCGATCTGTTCGGCGTCCTGCCG
TTGTCCCCGGAATCGCGCCTGCGCGCGAAGAACCTCGGCAAGAGCCTGTTCGAGGTGGCGCCGCGCGACCCA
TTGGCGGCCAAGCTGCGGCAACTGGCGGACAGCCTGTGCGTGACACGCGGCGAGCGCCGTTCGCTGCTGTCC
TGGCTCGGCCGGGCCAAGGCGGCGCTGCTATGA

Translation:

MNQNFVALTQHPGELDWLQNSLASAGQVVPAGSASLEELLALLDVTAAGVLFISLGKSNLVSQGALVEGLVS
ARPMLSVVAIGDGLDNQLVLAAMRAGARDFITYGARTSELTGLIRRLGGRLPSVPVSAARQGELLTLVSARP
DADGAFVALHLAKALQEQTPNQVLLLDVGQPTGEALAILGLDSAFTFSDALRNLRRLDQTLIDSAFTRLDSG
LRILSLTDEPGVLERVTTAELYLLLGNLRGAFSHVVVNLTGLPEGELSNQLLVQANRVLWMVDQSVPSCKKG
LERLRRLRERNLPLPSIELLIERYLPNVAPDQQALSRMFDLDLFGVLPLSPESRLRAKNLGKSLFEVAPRDP
LAAKLRQLADSLCVTRGERRSLLSWLGRAKAALL*

AnnotationID:1698 GeneID:1689

AnnotatorUID: diggins

Modification Date/Time: 2005-06-09 08:08:29

Gene Name:

Confidence Code: 3

GeneProduct: putative pilus assembly protein

Cell Localization: ()

Synonyms: PA4303

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (19) Protein secretion/export apparatus

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs: COG4963

Secondary Functional Category(ies): intracellular trafficking and secretion

EC Number:

Status: ACTIVE

Pathway:

Homology:

Structural Features:

COG4963, CpaE, Flp pilus assembly protein, ATPase CpaE 
[Intracellular trafficking and secretion]
CD-Length = 366 residues,  99.5% aligned
Score =  292 bits (748), Expect = 6e-80

Genomic Context:

Comment:

ReferenceID:3381

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:20528

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

ReferenceID:36665

Author/Investigator(s):

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: Misc (text/plain)

Data: 1689_cdd.html

URL:

Homologs By Global Alignment

Gene ID:1689

Identity:

10%

20%

30%

40%

50%

60%

70%

80%

90%

100%

HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score

2976 PA4303_tr translation of PA4303 394 99.74 99.74 0 1929.0

92884 gb|AAG07691.1|AE004846_8 (AE004846) hypothetical protein PA4303 [Pseudomonas aeruginosa PAO1] 394 99.74 99.74 0 1929.0

92885 gb|AAO58281.1| (AE016873) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000] 403 47.64 67.24 16 920.0

GC ORFID: `44691`	How Found: `BLASTX`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name: `t_PA4303`	Glimmer Score:
Start: `4255490`	Stop: `4254306`
Length: `1185`
Start Codon: `ATG`	Truncated Start:
Stop Codon: `TGA`	Truncated Stop:
Homolog: `t_PA4303 translation of PA4303`	Homolog Bit Score `747.0`
Other Homologs: `psyr_15may02_Scaffold4_revised_gene5761 (ORF: BLASTX 357.0), t_PA4303 (ORF: GLIMMER)`
GC ORF Sequence
ATGAACCAGAACTTCGTGGCGCTGACCCAGCATCCCGGCGAACTCGACTGGTTGCAGAACAGCCTGGCGTCC GCCGGCCAGGTGGTACCGGCAGGCAGCGCCAGCCTGGAGGAGCTGCTGGCGCTGCTCGACGTCACCGCCGCC GGGGTGCTGTTCATCAGCCTCGGCAAGAGCAACCTGGTGTCCCAGGGCGCGCTGGTCGAGGGATTGGTATCG GCGCGACCGATGCTCTCGGTGGTGGCCATCGGCGACGGCCTGGACAACCAGTTGGTGCTGGCGGCGATGCGC GCCGGCGCGCGCGACTTCATCACCTACGGCGCCCGCACCAGCGAGCTGACCGGGCTGATCCGGCGCCTCGGC GGACGCCTGCCCAGCGTGCCGGTGAGCGCGGCGCGCCAGGGCGAGCTGCTGACCCTGGTCAGCGCCCGACCG GACGCCGACGGCGCCTTCGTCGCCTTGCACCTGGCCAAGGCGTTGCAGGAGCAGACGCCGAACCAGGTCCTG CTGCTGGACGTCGGCCAGCCCACCGGCGAGGCGCTGGCGATCCTCGGCCTGGACTCGGCCTTCACCTTCAGC GACGCCTTGCGCAACCTGCGGCGCCTCGACCAGACCCTGATCGACAGCGCCTTCACCCGCCTCGACAGCGGC CTGCGGATACTCAGCCTGACCGACGAGCCCGGCGTGCTGGAGCGAGTCACCACCGCCGAACTCTATCTGTTG CTGGGCAACCTGCGCGGGGCGTTCAGCCATGTGGTGGTCAACCTCACCGGGCTGCCCGAGGGCGAGCTGAGC AACCAGTTGCTGGTGCAGGCCAACCGCGTGCTGTGGATGGTCGACCAGAGCGTGCCGTCCTGCAAGAAGGGT CTGGAGCGCCTGCGCCGCCTGCGCGAGCGCAACCTGCCGTTGCCCTCCATCGAGTTGCTGATCGAGCGCTAC CTGCCCAATGTGGCGCCGGACCAGCAGGCCCTCAGCCGGATGTTCGACCTCGATCTGTTCGGCGTCCTGCCG TTGTCCCCGGAATCGCGCCTGCGCGCGAAGAACCTCGGCAAGAGCCTGTTCGAGGTGGCGCCGCGCGACCCA TTGGCGGCCAAGCTGCGGCAACTGGCGGACAGCCTGTGCGTGACACGCGGCGAGCGCCGTTCGCTGCTGTCC TGGCTCGGCCGGGCCAAGGCGGCGCTGCTATGA