ViewGene
Locus Name:
GeneID:
Location:

GeneID:1688
TrivialName: PA14_66160
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_66160
PAO1 Ortholog Locus:PA5004
Sequence Length:1137
Protein Length:378
Start: 5894453
Stop: 5893317
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08389.1|AE004913_4 (AE004913) probable glycosyl transferase [Pseudomonas aeruginosa PAO1]
Identities = 377/378 (99%), Positives = 378/378 (100%)
Sequence:
ATGACTCGGTCGGCTGAACCTCGCGTCCTGCAGTTCTGTCACGGCTACGACGGGCCTTTCCTCGACTGTGCC
CGTCAGTACGCCAGCCTGTTCGCCGGAACCCCGTACAAGGTCACCACGGTGTTCCTCACCGGGCGTTCCGAT
CCTGAGGTGGCGGCGCGTTGCGCCTCCGACGAGGTACTGTTCCTCGAGTACGGCTCCAGGGACATCCGTGGC
CTCAAGCTGAAGGCGATCCGCGACTTGCGCGAGATCGCCCGTTCGCGCGACTTCCGCTTCTGCATCGCGCAC
CGCTTCAAGCCGATCTGGATCGCCAGCCTGGCCACTCGTCTGCCGATCGTTGGCGTGCACCACGCCTTCGGC
GATTACCAGCGGTTGTCGCGCAAGGTCTTCGCCGGCCTGATGAGCAAGCGCCTGAGCCTGCTGGCGGTGTCC
GACGCGGTGCGCGACGATATCCGCCGTTGCCTGCCGAAGTGGCCGGCGGAGCGGATCGAGACGCTCTACAAC
CGCATCGACGTCGCTGCGCTGCAGGCCGAGCAGGTCGAGCGCCTGAGTGCGCGCCGGCAACTGCGCCTGCCC
GACGAGGCCTGGGTGGTCGGCAACGTTGGCCGCCTGCATCCGGACAAGGACCAGGCTACCCTGCTGCGCGGC
TTCGCCGCCGCGCTGCCGCGCCTGCCACAGAACAGCCTGCTGGCGATCCTCGGCAGCGGCCGCCTGGAAGAG
CAGCTCAAGGACCTGGCCTGCGAACTGGGCATCGGCGAGCGCGTGCTGTTCCTCGGCCAGGTCGAAGAGGCA
CGGCGCTACTTCAAGGCGTTCGACGCCTTCGCCCTGAGTTCCGACCACGAGCCGTTCGGCATGGTCCTGCTG
GAGGCCATGGTCGCCGGCGTACCGCTGATCGCCACCGCCTGTGGCGGCGCCCGCGAAGTGGTGGAGGGGATC
GGCATCCTCTTCCCGCTGGGCGACGAGACGGCCCTGGCCGAGGGTCTGACCCACCTGGCGGCGCTCGACCGC
CGCCAGCGCGAGGCCTGTGCGCGGCTCATGCTCGAGCGCCTGGAGACACGCTTCTCCGACGCTGCGGTGCGT
CGCGAATTCTGGCGCCTGCCGACGATTGCCGGCTTCGCTTCGGAGTCTGCATGCTGA
Translation:
MTRSAEPRVLQFCHGYDGPFLDCARQYASLFAGTPYKVTTVFLTGRSDPEVAARCASDEVLFLEYGSRDIRG
LKLKAIRDLREIARSRDFRFCIAHRFKPIWIASLATRLPIVGVHHAFGDYQRLSRKVFAGLMSKRLSLLAVS
DAVRDDIRRCLPKWPAERIETLYNRIDVAALQAEQVERLSARRQLRLPDEAWVVGNVGRLHPDKDQATLLRG
FAAALPRLPQNSLLAILGSGRLEEQLKDLACELGIGERVLFLGQVEEARRYFKAFDAFALSSDHEPFGMVLL
EAMVAGVPLIATACGGAREVVEGIGILFPLGDETALAEGLTHLAALDRRQREACARLMLERLETRFSDAAVR
REFWRLPTIAGFASESAC*
AnnotationID:1697GeneID:1688
AnnotatorUID: diggins
Modification Date/Time: 2004-10-29 07:07:26
Gene Name:
Confidence Code:3
GeneProduct:putative glycosyl transferase
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(7) Cell wall / LPS / capsule
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam00534,COG0438
Secondary Functional Category(ies):cell envelope biogenesis, outer membrane
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN70510.1|AE016692_9 (AE016792) glycosyl transferase, putative [Pseudomonas putida
           KT2440]
          Length = 376

 Score =  546 bits (1406), Expect = e-154
 Identities = 270/376 (71%), Positives = 309/376 (82%)

>gb|AAO58419.1| (AE016874) glycosyl transferase, group 1 family protein
           [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 376

 Score =  538 bits (1385), Expect = e-152
 Identities = 268/374 (71%), Positives = 301/374 (80%)

>gb|AAM76052.1| (AF517687) glycosyl transferase [Pseudomonas chlororaphis]
          Length = 376

 Score =  525 bits (1353), Expect = e-148
 Identities = 272/372 (73%), Positives = 304/372 (81%), Gaps = 6/372 (1%)






 
Structural Features:
pfam00534, Glycos_transf_1, Glycosyl transferases group 1. 

COG0438, RfaG, Glycosyltransferase [Cell envelope biogenesis, outer membrane]






   
Genomic Context:






   
Comment:


















    ReferenceID:3379




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20526




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:35084




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1688_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1688
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2975
                           PA5004_tr
                           translation of PA5004
                           378
                           99.73
                           99.99
                           0
                           1930.0
     

     
     
92880
                           gb|AAG08389.1|AE004913_4
                           (AE004913) probable glycosyl transferase [Pseudomonas aeruginosa PAO1]
                           378
                           99.73
                           99.99
                           0
                           1930.0
     

     
     
92881
                           gb|AAN70510.1|AE016692_9
                           (AE016792) glycosyl transferase, putative [Pseudomonas putida KT2440]
                           378
                           71.42
                           81.74
                           2
                           1406.0
     

     
     
92883
                           gb|AAM76052.1|
                           (AF517687) glycosyl transferase [Pseudomonas chlororaphis]
                           381
                           71.39
                           80.05
                           8
                           1359.0
     

     
     
92882
                           gb|AAO58419.1|
                           (AE016874) glycosyl transferase, group 1 family protein [Pseudomonas syringae pv. tomato str. DC3000]
                           378
                           70.89
                           79.89
                           2
                           1384.0
     

     






      

          
GC ORFID: 44690How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5004Glimmer Score: 

          
Start: 5158136Stop: 5157000

          
Length: 1137


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA5004 translation of PA5004Homolog Bit Score 748.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene3394 (ORF: BLASTX 542.0), t_PA5004 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACTCGGTCGGCTGAACCTCGCGTCCTGCAGTTCTGTCACGGCTACGACGGGCCTTTCCTCGACTGTGCC 
CGTCAGTACGCCAGCCTGTTCGCCGGAACCCCGTACAAGGTCACCACGGTGTTCCTCACCGGGCGTTCCGAT 
CCTGAGGTGGCGGCGCGTTGCGCCTCCGACGAGGTACTGTTCCTCGAGTACGGCTCCAGGGACATCCGTGGC 
CTCAAGCTGAAGGCGATCCGCGACTTGCGCGAGATCGCCCGTTCGCGCGACTTCCGCTTCTGCATCGCGCAC 
CGCTTCAAGCCGATCTGGATCGCCAGCCTGGCCACTCGTCTGCCGATCGTTGGCGTGCACCACGCCTTCGGC 
GATTACCAGCGGTTGTCGCGCAAGGTCTTCGCCGGCCTGATGAGCAAGCGCCTGAGCCTGCTGGCGGTGTCC 
GACGCGGTGCGCGACGATATCCGCCGTTGCCTGCCGAAGTGGCCGGCGGAGCGGATCGAGACGCTCTACAAC 
CGCATCGACGTCGCTGCGCTGCAGGCCGAGCAGGTCGAGCGCCTGAGTGCGCGCCGGCAACTGCGCCTGCCC 
GACGAGGCCTGGGTGGTCGGCAACGTTGGCCGCCTGCATCCGGACAAGGACCAGGCTACCCTGCTGCGCGGC 
TTCGCCGCCGCGCTGCCGCGCCTGCCACAGAACAGCCTGCTGGCGATCCTCGGCAGCGGCCGCCTGGAAGAG 
CAGCTCAAGGACCTGGCCTGCGAACTGGGCATCGGCGAGCGCGTGCTGTTCCTCGGCCAGGTCGAAGAGGCA 
CGGCGCTACTTCAAGGCGTTCGACGCCTTCGCCCTGAGTTCCGACCACGAGCCGTTCGGCATGGTCCTGCTG 
GAGGCCATGGTCGCCGGCGTACCGCTGATCGCCACCGCCTGTGGCGGCGCCCGCGAAGTGGTGGAGGGGATC 
GGCATCCTCTTCCCGCTGGGCGACGAGACGGCCCTGGCCGAGGGTCTGACCCACCTGGCGGCGCTCGACCGC 
CGCCAGCGCGAGGCCTGTGCGCGGCTCATGCTCGAGCGCCTGGAGACACGCTTCTCCGACGCTGCGGTGCGT 
CGCGAATTCTGGCGCCTGCCGACGATTGCCGGCTTCGCTTCGGAGTCTGCATGCTGA