ViewGene
Locus Name:
GeneID:
Location:

GeneID:1687
TrivialName: PA14_13090
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_13090
PAO1 Ortholog Locus:PA3925
Sequence Length:1176
Protein Length:391
Start: 1124138
Stop: 1122963
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07312.1|AE004810_4 (AE004810) probable acyl-CoA thiolase [Pseudomonas aeruginosa PAO1]
Identities = 386/391 (98%), Positives = 389/391 (99%)
Sequence:
ATGTCCGATATCGTCATCGTCGCCGGCGCCCGTACTCCTATGGGCGGCTTCCAGGGCAGCCTGACCGGCGTT
TCCGCGGTCGACCTGGGTGCCGTCGTGATCCGCGAAGCGGTGCAGCGCGCCGGCATCGCCGCCGAGGACGTA
CAGGAAGTGATCATGGGTTGCGTCCTGCCCGCCGGCCTGAAGCAGGGCCCGGCCCGCCAGGCCGCGCTGGCG
GCCGGCCTGCCCGCCGCCACCGGCTGCACCACCATCAACAAGCTGTGCGGCTCCGGGATGAAGGCGGTGATG
CTGGCCCACGACCTGCTCAAGGCTGGCACCAACCAGGTGATGGTCGCCGGTGGCATGGAAAGCATGTCCAAC
GCGCCCTATGTCCTGGAGAAAGCCCGCAGCGGCCTGCGCATGGGCCACGGCGAGATCAAGGACCACATGTTC
CTCGACGGCCTCGAGGACGCCCGTACCGGCCGTTTGATGGGTTCGTTCGCCCAGGAGACCGCCGACAAGTAC
GGCGTGACCCGCGAGGAGATGGACGCCTATGCCATCGAATCGCTCAAGCGCGCCCAGGCCGCCATCGCCGAT
GGCTCGCTGGCGGCGGAAATCGTCCCGGTCACCGTCACCAGCCGCAAGGGCGAGAGCGTGGTGAAGGACGAC
GAGCAACCGCTGACCGCCAACCTGGAGAAGATCCCGAGCCTCAAGCCGGCGTTCCGCAAGGACGGCACCATC
ACCGCCGCCAATGCCAGCTCGATCTCCGACGGCGCCTCCGCGCTGGTCCTGATGACCGCCGAGGAAGCCCAG
CGCCGTGGCCTGAAGCCGCTGGCGCGAATCGTCGGCCATGCCACCCAGAGCCAGGACCCGAGCGAGTTCACC
CTGGCGCCGATCGGCGCGATGACCAACCTGTTCGCCAGGACCGGCTGGAACAAGGACGACGTCGACCTGTTC
GAGATCAACGAAGCCTTCGCCATGGTCACCATGCTCGCCATGCGCGAACACGGCCTCGATCATGCCAAGGTC
AATGTCTATGGCGGCGCCTGCGCCCAGGGCCATCCGGTCGGCTCCACCGGCTCGCGGATCATCCTCACCCTG
ATCAACGCCCTGCGCCAGAAAGGCGGCAAGCGCGGCGTCGCCTCGCTGTGCATCGGCGGCGGCGAAGCCACC
GCCGTGGCGGTCGAACTGCTCTGA
Translation:
MSDIVIVAGARTPMGGFQGSLTGVSAVDLGAVVIREAVQRAGIAAEDVQEVIMGCVLPAGLKQGPARQAALA
AGLPAATGCTTINKLCGSGMKAVMLAHDLLKAGTNQVMVAGGMESMSNAPYVLEKARSGLRMGHGEIKDHMF
LDGLEDARTGRLMGSFAQETADKYGVTREEMDAYAIESLKRAQAAIADGSLAAEIVPVTVTSRKGESVVKDD
EQPLTANLEKIPSLKPAFRKDGTITAANASSISDGASALVLMTAEEAQRRGLKPLARIVGHATQSQDPSEFT
LAPIGAMTNLFARTGWNKDDVDLFEINEAFAMVTMLAMREHGLDHAKVNVYGGACAQGHPVGSTGSRIILTL
INALRQKGGKRGVASLCIGGGEATAVAVELL*
AnnotationID:1696GeneID:1687
AnnotatorUID: urbach
Modification Date/Time: 2004-03-22 15:03:42
Gene Name:
Confidence Code:2
GeneProduct:probable 3-ketoacyl-CoA thiolase
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(13) Fatty acid and phospholipid metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:KOG1390,COG0183,pfam00108
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
gb|AAN67828.1|AE016414_3  (AE016782) 3-ketoacyl-CoA thiolase [Pseudomonas putida KT2440]
Length: 397  PctIdentity: 62.21 PctSimilarity 75.56 Gaps: 6 Score: 1233.0






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:3377




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20524




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31517




  
Author/Investigator(s):
        Olivera ER, Carnicero D, Garcia B, Minambres B, Moreno MA, Canedo L, Dirusso CC, Naharro G, Luengo JM





  
Title:
        Two different pathways are involved in the beta-oxidation of n-alkanoic and n-phenylalkanoic acids in Pseudomonas putida U: genetic studies and biotechnological applications.




  
PubMed:
        11251808


MedLine:
        21150437




    
Source:
Mol Microbiol. 2001 Feb;39(4):863-74.






    
Reference Type:Online 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?val=AAK18171.1









           
Homologs By Global Alignment 

           

       



     
Gene ID:1687
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2971
                           PA3925_tr
                           translation of PA3925
                           391
                           98.72
                           99.48
                           0
                           1932.0
     

     
     
92641
                           gb|AAG07312.1|AE004810_4
                           (AE004810) probable acyl-CoA thiolase [Pseudomonas aeruginosa PAO1]
                           391
                           98.72
                           99.48
                           0
                           1932.0
     

     
     
92642
                           gb|AAB48515.1|
                           (U88653) thiolase [Pseudomonas aeruginosa]
                           391
                           98.72
                           99.48
                           0
                           1932.0
     

     
     
92643
                           gb|AAQ59760.1|
                           (AE016917) acetyl-CoA C-acetyltransferase [Chromobacterium violaceum ATCC 12472]
                           394
                           65.48
                           80.71
                           3
                           1334.0
     

     
     
92645
                           emb|CAE27745.1|
                           (BX572600) putative acyl-CoA thiolase [Rhodopseudomonas palustris CGA009]
                           395
                           63.79
                           75.69
                           4
                           1274.0
     

     






      

          
GC ORFID: 44689How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3925Glimmer Score: 

          
Start: 3829800Stop: 3830975

          
Length: 1176


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3925 translation of PA3925Homolog Bit Score 748.0

          
Other Homologs:  t_PA2553 (ORF: BLASTX 477.0), t_PA2001 (ORF: BLASTX 362.0), psyr_15may02_Scaffold15_revised_gene2524 (ORF: BLASTX 349.0), t_PA0228 (ORF: BLASTX 268.0), t_PA3925 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTCCGATATCGTCATCGTCGCCGGCGCCCGTACTCCTATGGGCGGCTTCCAGGGCAGCCTGACCGGCGTT 
TCCGCGGTCGACCTGGGTGCCGTCGTGATCCGCGAAGCGGTGCAGCGCGCCGGCATCGCCGCCGAGGACGTA 
CAGGAAGTGATCATGGGTTGCGTCCTGCCCGCCGGCCTGAAGCAGGGCCCGGCCCGCCAGGCCGCGCTGGCG 
GCCGGCCTGCCCGCCGCCACCGGCTGCACCACCATCAACAAGCTGTGCGGCTCCGGGATGAAGGCGGTGATG 
CTGGCCCACGACCTGCTCAAGGCTGGCACCAACCAGGTGATGGTCGCCGGTGGCATGGAAAGCATGTCCAAC 
GCGCCCTATGTCCTGGAGAAAGCCCGCAGCGGCCTGCGCATGGGCCACGGCGAGATCAAGGACCACATGTTC 
CTCGACGGCCTCGAGGACGCCCGTACCGGCCGTTTGATGGGTTCGTTCGCCCAGGAGACCGCCGACAAGTAC 
GGCGTGACCCGCGAGGAGATGGACGCCTATGCCATCGAATCGCTCAAGCGCGCCCAGGCCGCCATCGCCGAT 
GGCTCGCTGGCGGCGGAAATCGTCCCGGTCACCGTCACCAGCCGCAAGGGCGAGAGCGTGGTGAAGGACGAC 
GAGCAACCGCTGACCGCCAACCTGGAGAAGATCCCGAGCCTCAAGCCGGCGTTCCGCAAGGACGGCACCATC 
ACCGCCGCCAATGCCAGCTCGATCTCCGACGGCGCCTCCGCGCTGGTCCTGATGACCGCCGAGGAAGCCCAG 
CGCCGTGGCCTGAAGCCGCTGGCGCGAATCGTCGGCCATGCCACCCAGAGCCAGGACCCGAGCGAGTTCACC 
CTGGCGCCGATCGGCGCGATGACCAACCTGTTCGCCAGGACCGGCTGGAACAAGGACGACGTCGACCTGTTC 
GAGATCAACGAAGCCTTCGCCATGGTCACCATGCTCGCCATGCGCGAACACGGCCTCGATCATGCCAAGGTC 
AATGTCTATGGCGGCGCCTGCGCCCAGGGCCATCCGGTCGGCTCCACCGGCTCGCGGATCATCCTCACCCTG 
ATCAACGCCCTGCGCCAGAAAGGCGGCAAGCGCGGCGTCGCCTCGCTGTGCATCGGCGGCGGCGAAGCCACC 
GCCGTGGCGGTCGAACTGCTCTGA