ViewGene
Locus Name:
GeneID:
Location:

GeneID:1686
TrivialName: PA14_72040
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_72040
PAO1 Ortholog Locus:PA5458
Sequence Length:1143
Protein Length:380
Start: 6422099
Stop: 6423241
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08843.1|AE004958_13 (AE004958) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 378/380 (99%), Positives = 378/380 (99%)
Sequence:
ATGAGCGGCAAACGCATCCTCGACATCGAACTGTTGCGCGGGCTGGCCGTGCTCGGCGTGGTATTCCACCAT
CTGCACGGCAACCTGTTCAGCGGCTCCCCGGCACTGCTGGACGGCATCAACCAGCGCGTCCAGTTCTGGTGG
GGCGTGGACCTGTTCTTCGCCATCTCCGGCTTCGTCATCGCCCGCACCCTCATCCCGCAACTGCGCGAGGCG
CCCACACGCCAGGCATTCTGGGAACAGGCGCGGTACTTCTGGATCCGCCGCGCCTTCCGCCTGTTGCCCTCG
GCCTGGCTGTGGCTGGCGCTGATCTTGGCCTGTTGCCTGCTGCTGAACCGCTCCGGAGCCTTCGGCAGCCTG
TCGGCCAACCTCGCGGCGAGCCTCGCCGGTTTCCTCCAGGTCGCCAACTTCCGCTTCGCCGACAGTTTCTAC
CGCTACGAATACGGTGCCAGCTTCGTCTACTGGAGCCTTTCCCTGGAGGAACAGTTCTACCTCCTGCTGCCG
CTGCTGATCCTCTGCCTGCGTCGCTACCTGGGCTGGGCCCTGCTGGCGCTGGTGCTGGTCCAGTTCTTCAGC
CTGCGCACGCCGCTGCTGATGGTATTGCGCACTGACGCCCTGGCCATCGGCGTACTGCTCGCCCTCGCCTCC
CTGCAGCCTGGCTATGCCCGCTGGAACCCCACCCTGCTGGGCCGCGCCTGGAGCGGGCCGTTGCTGCTGGTC
GCCGTGGCCGCGGCCCTGGGCGTGCTGGCCAGCGAAGCGTACAGCCTGGTCGCCGTGCGGATCGGCACCATC
GCGCTATTGTGCGGACTGCTGGTGTGGATAGCCTCCTACGACCGCGACTACCTGCTCTCCAACGGGCCGCTG
AAGCGCTTGCTGGTCTGGGTCGGCGCGCGCTCCTATGCGATCTACCTGATCCACATCCCGGCGTTCTATCTC
AGTCGCGAACTCTGCTTCCGCCTGGGCTGGGACGCCGGCGAGCGGCCCCTGTCGCTGCTCGGCACCAGCCTG
GTCCTGATCGTCGTACTCAGCGAGCTCAACTACCGCTTCGTCGAGAGCCCCTGCCGCGACCTGGGCTCCCGC
CTGGTCAAGCGCCTGAGCGCCGCCCGCCGCGTCGCCACCACTTCCGGAGCCACCTCATGCTGA
Translation:
MSGKRILDIELLRGLAVLGVVFHHLHGNLFSGSPALLDGINQRVQFWWGVDLFFAISGFVIARTLIPQLREA
PTRQAFWEQARYFWIRRAFRLLPSAWLWLALILACCLLLNRSGAFGSLSANLAASLAGFLQVANFRFADSFY
RYEYGASFVYWSLSLEEQFYLLLPLLILCLRRYLGWALLALVLVQFFSLRTPLLMVLRTDALAIGVLLALAS
LQPGYARWNPTLLGRAWSGPLLLVAVAAALGVLASEAYSLVAVRIGTIALLCGLLVWIASYDRDYLLSNGPL
KRLLVWVGARSYAIYLIHIPAFYLSRELCFRLGWDAGERPLSLLGTSLVLIVVLSELNYRFVESPCRDLGSR
LVKRLSAARRVATTSGATSC*
AnnotationID:1695GeneID:1686
AnnotatorUID: diggins
Modification Date/Time: 2005-03-21 05:05:35
Gene Name:
Confidence Code:3
GeneProduct:putative acyltransferase
Cell Localization:()
Synonyms:PA5458
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(13) Fatty acid and phospholipid metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1835,pfam01757
Secondary Functional Category(ies):transport of small molecules
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG1835, Predicted acyltransferases [Lipid metabolism]
CD-Length = 386 residues,  96.1% aligned
Score =  114 bits (287), Expect = 1e-26
Identities = 114/385 (29%), Positives = 153/385 (39%), Gaps = 22/385 (5%)

pfam01757, Acyltransferase family. 
CD-Length = 327 residues, 100.0% aligned
Score = 90.8 bits (225), Expect = 2e-19
Identities = 109/362 (30%), Positives = 165/362 (45%), Gaps = 45/362 (12%)








   
Genomic Context:






   
Comment:


















    ReferenceID:3375




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20522




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:34637




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1686_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1686
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2970
                           PA5458_tr
                           translation of PA5458
                           380
                           99.47
                           99.47
                           0
                           1934.0
     

     
     
92640
                           gb|AAG08843.1|AE004958_13
                           (AE004958) hypothetical protein PA5458 [Pseudomonas aeruginosa PAO1]
                           380
                           99.47
                           99.47
                           0
                           1934.0
     

     






      

          
GC ORFID: 44688How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5458Glimmer Score: 

          
Start: 5685788Stop: 5686930

          
Length: 1143


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA5458 translation of PA5458Homolog Bit Score 749.0

          
Other Homologs:  t_PA5458 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCGGCAAACGCATCCTCGACATCGAACTGTTGCGCGGGCTGGCCGTGCTCGGCGTGGTATTCCACCAT 
CTGCACGGCAACCTGTTCAGCGGCTCCCCGGCACTGCTGGACGGCATCAACCAGCGCGTCCAGTTCTGGTGG 
GGCGTGGACCTGTTCTTCGCCATCTCCGGCTTCGTCATCGCCCGCACCCTCATCCCGCAACTGCGCGAGGCG 
CCCACACGCCAGGCATTCTGGGAACAGGCGCGGTACTTCTGGATCCGCCGCGCCTTCCGCCTGTTGCCCTCG 
GCCTGGCTGTGGCTGGCGCTGATCTTGGCCTGTTGCCTGCTGCTGAACCGCTCCGGAGCCTTCGGCAGCCTG 
TCGGCCAACCTCGCGGCGAGCCTCGCCGGTTTCCTCCAGGTCGCCAACTTCCGCTTCGCCGACAGTTTCTAC 
CGCTACGAATACGGTGCCAGCTTCGTCTACTGGAGCCTTTCCCTGGAGGAACAGTTCTACCTCCTGCTGCCG 
CTGCTGATCCTCTGCCTGCGTCGCTACCTGGGCTGGGCCCTGCTGGCGCTGGTGCTGGTCCAGTTCTTCAGC 
CTGCGCACGCCGCTGCTGATGGTATTGCGCACTGACGCCCTGGCCATCGGCGTACTGCTCGCCCTCGCCTCC 
CTGCAGCCTGGCTATGCCCGCTGGAACCCCACCCTGCTGGGCCGCGCCTGGAGCGGGCCGTTGCTGCTGGTC 
GCCGTGGCCGCGGCCCTGGGCGTGCTGGCCAGCGAAGCGTACAGCCTGGTCGCCGTGCGGATCGGCACCATC 
GCGCTATTGTGCGGACTGCTGGTGTGGATAGCCTCCTACGACCGCGACTACCTGCTCTCCAACGGGCCGCTG 
AAGCGCTTGCTGGTCTGGGTCGGCGCGCGCTCCTATGCGATCTACCTGATCCACATCCCGGCGTTCTATCTC 
AGTCGCGAACTCTGCTTCCGCCTGGGCTGGGACGCCGGCGAGCGGCCCCTGTCGCTGCTCGGCACCAGCCTG 
GTCCTGATCGTCGTACTCAGCGAGCTCAACTACCGCTTCGTCGAGAGCCCCTGCCGCGACCTGGGCTCCCGC 
CTGGTCAAGCGCCTGAGCGCCGCCCGCCGCGTCGCCACCACTTCCGGAGCCACCTCATGCTGA