ViewGene

Locus Name:
GeneID:
Location:

GeneID:1685
TrivialName: PA14_63090
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_63090
PAO1 Ortholog Locus:PA4771
Sequence Length:1146
Protein Length:381
Start: 5629153
Stop: 5630298
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08157.1|AE004890_10 (AE004890) L-lactate dehydrogenase [Pseudomonas aeruginosa PAO1]
Identities = 380/381 (99%), Positives = 381/381 (100%)
Sequence:
ATGATCATTTCCGCTTCCACCGACTACCGCGCCGCCGCCCAACGCAAGCTGCCGCCGTTCCTCTTCCACTAC
ATCGACGGCGGCGCCTACGCCGAGTACACCCTGCGCCGCAACGTCGAGGACCTGTCGGCCATCGCCCTGCGT
CAGCGGGTGCTGAAGAACATGTCCGAGCTGAGCCTGGAAACCCGCCTGTTCGACGAGACCCTGGCGATGCCG
GTGGCGCTCGCCCCGGTCGGTCTCACCGGCATGTACGCCCGCCGCGGTGAAGTCCAGGCGGCGCGCGCGGCG
GCGGCGAAGGGCGTGCCCTTCACCCTGTCGACGGTATCGGTGTGCCCGATCGAGGAGGTCGCCCCGGCCATC
GACCGGCCGATGTGGTTCCAGCTCTACGTGCTGAAGGACCGCGGCTTCATGCGCAACGCCCTGGAGCGGGCC
AAGGCCGCCGGCGTCACCACCCTGGTGTTCACCGTCGACATGCCGGTCCCCGGCGCCCGCTACCGCGACGCC
CATTCCGGCATGAGCGGCCCCTACGCCGCGCCGCGCCGCATCCTGCAAGCCATGACCCACCCGGCCTGGGCC
TGGGACGTCGGCCTGCTGGGCAAGCCCCACGATCTCGGCAACATCTCCGCCTACCGCGGCAACCCGACCGGA
CTGGAGGACTACATCGGCTGGCTGGGCGCCAACTTCGACCCGTCGATTGCCTGGAAGGACCTGGAGTGGATC
CGCGAGTTCTGGGACGGCCCGATGGTGATCAAGGGCATCCTCGACCCCGAGGATGCCAGGGATGCGGTGAAG
TTCGGCGCCGACGGCATCGTCGTCTCCAACCACGGCGGCCGCCAGCTCGATGGCGTGCTGTCCAGCGCCCGC
GCGCTGCCGGCGATCGCCGACGCGGTGAAGGGCGAACTGGCGATCCTTGCCGACTCCGGCATCCGCACCGGT
CTCGACGTGGTGCGGATGATCGCCCTCGGCGCCGACAGCGTGCTGCTCGGCCGCGCCTTCGTCTACGCCCTG
GCCGCCGCCGGCGAGGCCGGGGTGCGCAACCTGCTCGAACTGATCGAAAAGGAAATGCGCGTGGCCATGGTC
CTCACCGGGGCCAAGTCGATCGGCGAGATCAGCGCCGACTCGCTGGTCCGCGAACTGGGCGCCTGA
Translation:
MIISASTDYRAAAQRKLPPFLFHYIDGGAYAEYTLRRNVEDLSAIALRQRVLKNMSELSLETRLFDETLAMP
VALAPVGLTGMYARRGEVQAARAAAAKGVPFTLSTVSVCPIEEVAPAIDRPMWFQLYVLKDRGFMRNALERA
KAAGVTTLVFTVDMPVPGARYRDAHSGMSGPYAAPRRILQAMTHPAWAWDVGLLGKPHDLGNISAYRGNPTG
LEDYIGWLGANFDPSIAWKDLEWIREFWDGPMVIKGILDPEDARDAVKFGADGIVVSNHGGRQLDGVLSSAR
ALPAIADAVKGELAILADSGIRTGLDVVRMIALGADSVLLGRAFVYALAAAGEAGVRNLLELIEKEMRVAMV
LTGAKSIGEISADSLVRELGA*
AnnotationID:1694GeneID:1685
AnnotatorUID: diggins
Modification Date/Time: 2005-04-27 07:07:02
Gene Name:lldD
Confidence Code:2
GeneProduct:L-lactate dehydrogenase
Cell Localization:()
Synonyms:lctD
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(12) Energy metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam01070,COG1304
Secondary Functional Category(ies):
EC Number:1.1.1.27
Status:ACTIVE
Pathway:
Homology:
>gb|AAN70308.1|AE016671_9 (AE016791) L-lactate dehydrogenase [Pseudomonas putida KT2440]
          Length = 381

 Score =  676 bits (1744), Expect = 0.0
 Identities = 336/381 (88%), Positives = 358/381 (93%)

>gb|AAM35025.1| (AE011636) L-lactate dehydrogenase [Xanthomonas axonopodis pv.
           citri str. 306]
          Length = 388

 Score =  670 bits (1728), Expect = 0.0
 Identities = 333/377 (88%), Positives = 357/377 (94%)

>gb|AAG58752.1|AE005588_3 (AE005588) L-lactate dehydrogenase [Escherichia coli O157:H7
           EDL933]
          Length = 396

 Score =  660 bits (1702), Expect = 0.0
 Identities = 328/380 (86%), Positives = 354/380 (93%)
Structural Features:
pfam01070, FMN_dh, FMN-dependent dehydrogenase.
CD-Length = 353 residues,  99.7% aligned
Score =  465 bits (1197), Expect = 5e-132
Identities = 189/365 (51%), Positives = 234/365 (64%), Gaps = 14/365 (3%)

COG1304, LldD, L-lactate dehydrogenase (FMN-dependent) and related 
alpha-hydroxy acid dehydrogenases 
[Energy production and conversion]
CD-Length = 360 residues,  96.7% aligned
Score =  379 bits (974), Expect = 4e-106
Identities = 176/371 (47%), Positives = 221/371 (59%), Gaps = 24/371 (6%)
Genomic Context:
Comment:
ReferenceID:3373
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:20520
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:37672
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:1685_cdd.html
URL:
ReferenceID:37708
Author/Investigator(s): Dong JM, Taylor JS, Latour DJ, Iuchi S, Lin EC.
Title: Three overlapping lct genes involved in L-lactate utilization by Escherichia coli.
PubMed: 8407843
MedLine:
Source:
J Bacteriol. 1993 Oct;175(20):6671-8.
Reference Type:Journal
Data:
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=8407843
ReferenceID:37710
Author/Investigator(s): Erwin AL, Gotschlich EC.
Title: Cloning of a Neisseria meningitidis gene for L-lactate dehydrogenase (L-LDH): evidence for a second meningococcal L-LDH with different regulation.
PubMed: 8759842
MedLine:
Source:
J Bacteriol. 1996 Aug;178(16):4807-13.
Reference Type:Journal
Data:
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=8759842
Homologs By Global Alignment
Gene ID:1685

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
2968 PA4771_tr translation of PA4771 381 99.73 99.99 0 1935.0
92593 gb|AAG08157.1|AE004890_10 (AE004890) L-lactate dehydrogenase [Pseudomonas aeruginosa PAO1] 381 99.73 99.99 0 1935.0
92594 gb|AAN70308.1|AE016671_9 (AE016791) L-lactate dehydrogenase [Pseudomonas putida KT2440] 381 88.18 93.96 0 1744.0
92595 gb|AAM35025.1| (AE011636) L-lactate dehydrogenase [Xanthomonas axonopodis pv. citri str. 306] 388 85.82 92.01 7 1722.0
92596 gb|AAM39425.1| (AE012105) L-lactate dehydrogenase [Xanthomonas campestris pv. campestris str. ATCC 33913] 386 85.75 91.96 5 1714.0
GC ORFID: 44687How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA4771Glimmer Score:
Start: 4892833Stop: 4893978
Length: 1146
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA4771 translation of PA4771Homolog Bit Score 749.0
Other Homologs: psyr_15may02_Scaffold3_revised_gene5120 (ORF: BLASTX 570.0), t_PA2382 (ORF: BLASTX 327.0), t_PA4771 (ORF: GLIMMER)
GC ORF Sequence
ATGATCATTTCCGCTTCCACCGACTACCGCGCCGCCGCCCAACGCAAGCTGCCGCCGTTCCTCTTCCACTAC
ATCGACGGCGGCGCCTACGCCGAGTACACCCTGCGCCGCAACGTCGAGGACCTGTCGGCCATCGCCCTGCGT
CAGCGGGTGCTGAAGAACATGTCCGAGCTGAGCCTGGAAACCCGCCTGTTCGACGAGACCCTGGCGATGCCG
GTGGCGCTCGCCCCGGTCGGTCTCACCGGCATGTACGCCCGCCGCGGTGAAGTCCAGGCGGCGCGCGCGGCG
GCGGCGAAGGGCGTGCCCTTCACCCTGTCGACGGTATCGGTGTGCCCGATCGAGGAGGTCGCCCCGGCCATC
GACCGGCCGATGTGGTTCCAGCTCTACGTGCTGAAGGACCGCGGCTTCATGCGCAACGCCCTGGAGCGGGCC
AAGGCCGCCGGCGTCACCACCCTGGTGTTCACCGTCGACATGCCGGTCCCCGGCGCCCGCTACCGCGACGCC
CATTCCGGCATGAGCGGCCCCTACGCCGCGCCGCGCCGCATCCTGCAAGCCATGACCCACCCGGCCTGGGCC
TGGGACGTCGGCCTGCTGGGCAAGCCCCACGATCTCGGCAACATCTCCGCCTACCGCGGCAACCCGACCGGA
CTGGAGGACTACATCGGCTGGCTGGGCGCCAACTTCGACCCGTCGATTGCCTGGAAGGACCTGGAGTGGATC
CGCGAGTTCTGGGACGGCCCGATGGTGATCAAGGGCATCCTCGACCCCGAGGATGCCAGGGATGCGGTGAAG
TTCGGCGCCGACGGCATCGTCGTCTCCAACCACGGCGGCCGCCAGCTCGATGGCGTGCTGTCCAGCGCCCGC
GCGCTGCCGGCGATCGCCGACGCGGTGAAGGGCGAACTGGCGATCCTTGCCGACTCCGGCATCCGCACCGGT
CTCGACGTGGTGCGGATGATCGCCCTCGGCGCCGACAGCGTGCTGCTCGGCCGCGCCTTCGTCTACGCCCTG
GCCGCCGCCGGCGAGGCCGGGGTGCGCAACCTGCTCGAACTGATCGAAAAGGAAATGCGCGTGGCCATGGTC
CTCACCGGGGCCAAGTCGATCGGCGAGATCAGCGCCGACTCGCTGGTCCGCGAACTGGGCGCCTGA