ViewGene

Locus Name:
GeneID:
Location:

GeneID:1684
TrivialName: PA14_20110
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_20110
PAO1 Ortholog Locus:PA3400
Sequence Length:1134
Protein Length:377
Start: 1733200
Stop: 1734333
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06788.1|AE004761_4 (AE004761) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 375/377 (99%), Positives = 377/377 (100%)
Sequence:
ATGAAGAACTACCTGCAGATCCTCCGGGAAACCCTGAAGGCCATGCTGTCCAAGCCGATGTGGCTGATGGTC
GTGGCCTCGGTGTGCATCACCTCGCTGCCGTACATGAACCACACCGCCCTCGACCTGCCGGTGGCGGTGGTC
GACGAGGACCACAGCGACGTGTCGCGCGAGCTGGTCCGGCTGCTCGATTCGGCGCCGAAGGTCGCCGTGGTC
GGCTACGACAGCCTGCCGCAGGCCAAGCGCGACCTGGCCTGGCGCGAGCTGTACGCGATCATCGTGATCCCG
CTGAACTTCGAGAAGCGCCTGCTGCGCGGCGAGGCGCTGGTGATCCCGTACTTCGGCGACGCCACCAACCGC
ATGGCCAACGGCCAGATCCAGCAGGACATCTCGGCGGTCTACAGCGCGCTGACCAACCGCTACAACGCCGCC
CTGCTGGAACGCGAAGGCTTCACCGCGACCCAGGCGCAGGTGGTGCTGAGCCCGCTGGTAGGGCAATTGACC
GACCTGTTCAACCCCGGTATCAGCTTCGCCGCGATCGTTCTTCCGGGGCTGCTGTCGCTGATCCTGCAACAC
AGCCTGCTGCTCGGCTGCACCCGCGGCAACATCATGCTGCGCGGCGGCACCCCGCGCTACATGCGCCAGCCG
CTGTCGACCCGCTTCGGCCGCTACAGCGCGCAACTGCTGATCTGGACCGTGCTGGCGATGCTCTTCTACGTG
ATCTGGCCGCACCTGCTGGGCTATCGCCAGTCGGCCTCGTTCTTCATGCTGCTGGGGATCGTCCTGCCGTTC
CTGATCGCGGTGATCGCCCTCAGCGAGTTCATCGCCGAGCTGCTGCCCACCGAGGAATCGGTGTACCTGACC
ATGACCTTCATCACCCTGCCGCTGTTCTACATGGCCGGCTACAGCTGGCCGGAACAGGCCATGCCGGACTGG
GTACGCTGGCTGGCCGACGCGATCCCCTCGACCTGGGCGATCCGCGCCATCGCCGAGATGAACCAGATGGAC
CTGCCGCTGCGCGAAGTCAGCGACCATGCCCTGGTGCTGCTGGGCATGGCCGCCACCTATGCGTTGCTGGGT
ACGCTGCTGTACCAGTACCGCAACTGGCGCTGGGACAACATCAAGGGTTGGTGA
Translation:
MKNYLQILRETLKAMLSKPMWLMVVASVCITSLPYMNHTALDLPVAVVDEDHSDVSRELVRLLDSAPKVAVV
GYDSLPQAKRDLAWRELYAIIVIPLNFEKRLLRGEALVIPYFGDATNRMANGQIQQDISAVYSALTNRYNAA
LLEREGFTATQAQVVLSPLVGQLTDLFNPGISFAAIVLPGLLSLILQHSLLLGCTRGNIMLRGGTPRYMRQP
LSTRFGRYSAQLLIWTVLAMLFYVIWPHLLGYRQSASFFMLLGIVLPFLIAVIALSEFIAELLPTEESVYLT
MTFITLPLFYMAGYSWPEQAMPDWVRWLADAIPSTWAIRAIAEMNQMDLPLREVSDHALVLLGMAATYALLG
TLLYQYRNWRWDNIKGW*
AnnotationID:1693GeneID:1684
AnnotatorUID: diggins
Modification Date/Time: 2005-04-18 11:11:32
Gene Name:
Confidence Code:3
GeneProduct:putative ABC-type multidrug transport system, permease component
Cell Localization:()
Synonyms:PA3400
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(3) Antibiotic resistance and susceptibility
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
Genomic Context:
Comment:
ReferenceID:3371
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:20518
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:32164
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:1684_cdd.html
URL:
Homologs By Global Alignment
Gene ID:1684

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
2967 PA3400_tr translation of PA3400 377 99.46 99.99 0 1933.0
92591 gb|AAG06788.1|AE004761_4 (AE004761) hypothetical protein PA3400 [Pseudomonas aeruginosa PAO1] 377 99.46 99.99 0 1933.0
92592 emb|CAE16886.1| (BX571874) unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] 383 45.69 66.84 8 922.0
GC ORFID: 44686How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA3400Glimmer Score:
Start: 3220732Stop: 3219599
Length: 1134
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA3400 translation of PA3400Homolog Bit Score 749.0
Other Homologs: t_PA3400 (ORF: GLIMMER)
GC ORF Sequence
ATGAAGAACTACCTGCAGATCCTCCGGGAAACCCTGAAGGCCATGCTGTCCAAGCCGATGTGGCTGATGGTC
GTGGCCTCGGTGTGCATCACCTCGCTGCCGTACATGAACCACACCGCCCTCGACCTGCCGGTGGCGGTGGTC
GACGAGGACCACAGCGACGTGTCGCGCGAGCTGGTCCGGCTGCTCGATTCGGCGCCGAAGGTCGCCGTGGTC
GGCTACGACAGCCTGCCGCAGGCCAAGCGCGACCTGGCCTGGCGCGAGCTGTACGCGATCATCGTGATCCCG
CTGAACTTCGAGAAGCGCCTGCTGCGCGGCGAGGCGCTGGTGATCCCGTACTTCGGCGACGCCACCAACCGC
ATGGCCAACGGCCAGATCCAGCAGGACATCTCGGCGGTCTACAGCGCGCTGACCAACCGCTACAACGCCGCC
CTGCTGGAACGCGAAGGCTTCACCGCGACCCAGGCGCAGGTGGTGCTGAGCCCGCTGGTAGGGCAATTGACC
GACCTGTTCAACCCCGGTATCAGCTTCGCCGCGATCGTTCTTCCGGGGCTGCTGTCGCTGATCCTGCAACAC
AGCCTGCTGCTCGGCTGCACCCGCGGCAACATCATGCTGCGCGGCGGCACCCCGCGCTACATGCGCCAGCCG
CTGTCGACCCGCTTCGGCCGCTACAGCGCGCAACTGCTGATCTGGACCGTGCTGGCGATGCTCTTCTACGTG
ATCTGGCCGCACCTGCTGGGCTATCGCCAGTCGGCCTCGTTCTTCATGCTGCTGGGGATCGTCCTGCCGTTC
CTGATCGCGGTGATCGCCCTCAGCGAGTTCATCGCCGAGCTGCTGCCCACCGAGGAATCGGTGTACCTGACC
ATGACCTTCATCACCCTGCCGCTGTTCTACATGGCCGGCTACAGCTGGCCGGAACAGGCCATGCCGGACTGG
GTACGCTGGCTGGCCGACGCGATCCCCTCGACCTGGGCGATCCGCGCCATCGCCGAGATGAACCAGATGGAC
CTGCCGCTGCGCGAAGTCAGCGACCATGCCCTGGTGCTGCTGGGCATGGCCGCCACCTATGCGTTGCTGGGT
ACGCTGCTGTACCAGTACCGCAACTGGCGCTGGGACAACATCAAGGGTTGGTGA