ViewGene
Locus Name:
GeneID:
Location:

GeneID:1681
TrivialName: PA14_37440
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_37440
PAO1 Ortholog Locus:PA2092
Sequence Length:1197
Protein Length:398
Start: 3333364
Stop: 3332168
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05480.1|AE004636_11 (AE004636) probable MFS transporter [Pseudomonas aeruginosa PAO1]
Identities = 396/398 (99%), Positives = 397/398 (99%), Gaps = 1/398 (0%)
Sequence:
ATGGGCGAGACTGAACGGAGCAGGGCGGAGGTGGGCGTCTGGCTGCTGGCCGGGCTGGCCTTCGTGGTCGGC
ACGGTGGAACTGGTGGTGGCCGGGGTGCTCGACGAACTGGCCGCCAGTTTCGCCGTCAGCCAGGGCCGGGCC
GGGTTGCTGATGAGCCTGTACGCGCTGGTCTATGCGCTGCTCGGCCCGCTGCTGGTCTACCTCAGCGCCGGC
ATCGAGCGCCGCCGCCTGCTGGCCGGCGCGCTGCTGGTGTTCGTCGGCGCCAACCTGGCCAGCGCCGCCGCG
CCGAGCTTCGCCCTGTTGCTGGCGAGCCGGCTGCTGGTGGCGGCCAGTGCCTCGGTCATTGTGGTGGTGGCG
ATCACCCTGGCGGTGGCCATCGTCGCACCGGAACGGCGCGGCCGGGCGATCGGCCTGGTGTTTGCCGGCATC
GTCGCCTCACTGGTGCTGGGCGTACCGCTGGGCACCCTGATCGGCGAGTTCTGGGGTTGGCGCAGCCTGTTC
CTGCTGCTCGCCGGGGTCGCGTTGCTCGGCCTGCCGCTGCTCCTGCGCCTGCTGCCGGCCATACCCGGCGCG
CCCGGCATCGCCCCGGCGGAGCAACTGCGGGCGCTGGCCCGGGGCCGGGTGCCGTTCGCCCACCTGGCATCG
CTGTTGCAGATGACCGGCCAGTTCACCGTCTACACCTACATCGTGCCGTTCCTGGTCGGCAGCATGGCCCTC
GACAAACCGACCATCAGCCTGGTCCTGCTGGTCTACGGGGGCGGCGGCATCCTCGGCGCGCTGCTCGGCGGA
CGTGCCGCCGACCGCTGGCCGGGGCCGGCCACCTTCGTCGCCTTCCTGCTCCTGCATGCACTGGCCCTGGTC
CTGCTGCCGTTCGCCACCGGCGGCCTGCCGCTGCTGCTGGGCGCGGTGGTGTTCTGGTGCGTGTTCAACATG
GCGCCGGGGCCGGCGATCCAGAAATACCTGGTGGAACTCAGCCCGGACACCGCGGCGATCCAGATCAGCCTC
AACACCAGCGCGATCCAGCTCGGCGTGGCCCTGGGCGCCTTCATCGGCGCGATCCTGGTGGACCAGGTGGCG
GTGCGCGCGCTCCCCTGGTGGGGCGCCGCGCTGATCCTCGGCGCCGCCGCCTGCGGCTGGCTGTCCGCGCAG
CGGCCGGCGGCGGGCTCGGCGGACTGCCGGGAGCGCCTCGATTGA
Translation:
MGETERSRAEVGVWLLAGLAFVVGTVELVVAGVLDELAASFAVSQGRAGLLMSLYALVYALLGPLLVYLSAG
IERRRLLAGALLVFVGANLASAAAPSFALLLASRLLVAASASVIVVVAITLAVAIVAPERRGRAIGLVFAGI
VASLVLGVPLGTLIGEFWGWRSLFLLLAGVALLGLPLLLRLLPAIPGAPGIAPAEQLRALARGRVPFAHLAS
LLQMTGQFTVYTYIVPFLVGSMALDKPTISLVLLVYGGGGILGALLGGRAADRWPGPATFVAFLLLHALALV
LLPFATGGLPLLLGAVVFWCVFNMAPGPAIQKYLVELSPDTAAIQISLNTSAIQLGVALGAFIGAILVDQVA
VRALPWWGAALILGAAACGWLSAQRPAAGSADCRERLD*
AnnotationID:1690GeneID:1681
AnnotatorUID: diggins
Modification Date/Time: 2005-03-03 07:07:53
Gene Name:
Confidence Code:3
GeneProduct:putative MFS transporter
Cell Localization:()
Synonyms:PA2092
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:putative major facilitator family transporter
Functional Category Confidence Code:5
COGs:COG2814
Secondary Functional Category(ies):membrane protein
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAP28925.1| (AE017040) major facilitator family transporter [Bacillus anthracis
           str. Ames]
          Length = 414

 Score =  275 bits (702), Expect = 5e-73
 Identities = 140/373 (37%), Positives = 231/373 (61%)








 
Structural Features:
COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]
CD-Length = 394 residues,  99.5% aligned
Score =  222 bits (567), Expect = 6e-59
Identities = 170/393 (43%), Positives = 222/393 (56%), Gaps = 3/393 (0%)








   
Genomic Context:






   
Comment:


















    ReferenceID:3365




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20512




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32616




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1681_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1681
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2963
                           PA2092_tr
                           translation of PA2092
                           398
                           99.49
                           99.74
                           1
                           1938.0
     

     
     
92533
                           gb|AAG05480.1|AE004636_11
                           (AE004636) probable MFS transporter [Pseudomonas aeruginosa PAO1]
                           398
                           99.49
                           99.74
                           1
                           1938.0
     

     






      

          
GC ORFID: 44683How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2092Glimmer Score: 

          
Start: 1620550Stop: 1621746

          
Length: 1197


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2092 translation of PA2092Homolog Bit Score 750.0

          
Other Homologs:  t_PA2092 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGGCGAGACTGAACGGAGCAGGGCGGAGGTGGGCGTCTGGCTGCTGGCCGGGCTGGCCTTCGTGGTCGGC 
ACGGTGGAACTGGTGGTGGCCGGGGTGCTCGACGAACTGGCCGCCAGTTTCGCCGTCAGCCAGGGCCGGGCC 
GGGTTGCTGATGAGCCTGTACGCGCTGGTCTATGCGCTGCTCGGCCCGCTGCTGGTCTACCTCAGCGCCGGC 
ATCGAGCGCCGCCGCCTGCTGGCCGGCGCGCTGCTGGTGTTCGTCGGCGCCAACCTGGCCAGCGCCGCCGCG 
CCGAGCTTCGCCCTGTTGCTGGCGAGCCGGCTGCTGGTGGCGGCCAGTGCCTCGGTCATTGTGGTGGTGGCG 
ATCACCCTGGCGGTGGCCATCGTCGCACCGGAACGGCGCGGCCGGGCGATCGGCCTGGTGTTTGCCGGCATC 
GTCGCCTCACTGGTGCTGGGCGTACCGCTGGGCACCCTGATCGGCGAGTTCTGGGGTTGGCGCAGCCTGTTC 
CTGCTGCTCGCCGGGGTCGCGTTGCTCGGCCTGCCGCTGCTCCTGCGCCTGCTGCCGGCCATACCCGGCGCG 
CCCGGCATCGCCCCGGCGGAGCAACTGCGGGCGCTGGCCCGGGGCCGGGTGCCGTTCGCCCACCTGGCATCG 
CTGTTGCAGATGACCGGCCAGTTCACCGTCTACACCTACATCGTGCCGTTCCTGGTCGGCAGCATGGCCCTC 
GACAAACCGACCATCAGCCTGGTCCTGCTGGTCTACGGGGGCGGCGGCATCCTCGGCGCGCTGCTCGGCGGA 
CGTGCCGCCGACCGCTGGCCGGGGCCGGCCACCTTCGTCGCCTTCCTGCTCCTGCATGCACTGGCCCTGGTC 
CTGCTGCCGTTCGCCACCGGCGGCCTGCCGCTGCTGCTGGGCGCGGTGGTGTTCTGGTGCGTGTTCAACATG 
GCGCCGGGGCCGGCGATCCAGAAATACCTGGTGGAACTCAGCCCGGACACCGCGGCGATCCAGATCAGCCTC 
AACACCAGCGCGATCCAGCTCGGCGTGGCCCTGGGCGCCTTCATCGGCGCGATCCTGGTGGACCAGGTGGCG 
GTGCGCGCGCTCCCCTGGTGGGGCGCCGCGCTGATCCTCGGCGCCGCCGCCTGCGGCTGGCTGTCCGCGCAG 
CGGCCGGCGGCGGGCTCGGCGGACTGCCGGGAGCGCCTCGATTGA