ViewGene

Locus Name:
GeneID:
Location:

GeneID:168
TrivialName: PA14_09970
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_09970
PAO1 Ortholog Locus:PA4168
Sequence Length:2409
Protein Length:802
Start: 858843
Stop: 856435
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07555.1|AE004833_6 (AE004833) probable TonB-dependent receptor [Pseudomonas aeruginosa PAO1]
Identities = 800/802 (99%), Positives = 801/802 (99%)
Sequence:
ATGAAACACGTCGTTTCCAGTGCGTTATTGCTCGGTCTCTCCTCGCTTTCCCTGGCCGCCCAGGCCGCTCCC
ATCGCCCTTGACCTTCCCGCCCAGCCCCTGGCCGCATCCCTCGAGCAATTGCAGGGCGCCAGCGGCCTGCGC
ATCCGTTTCGACCGCGCGGCCGTGGCCGACCGGCGCGCACCGGCCCTACGCGGCACGCTGGAGCCGAGCGAG
GCACTGCAGCGTCTGCTCGCAGGTTCCGGACTGAGCGGGGAGGTACGGGGCGGCGACGCCTGGGTCGAGGCC
GCGCCGACAGGTGCCGGCATCGCCCCCGGCGACAGCGTCGACCTCGGCGCGCTCAGCGTGGTCGCCACCCAG
GACCCGGCCACCGCCGCCATCACCGAAGACAGCGGCTCCTACACCACCCGGGCGATGCGCACCTCGACCAAG
CTGGCGATGTCGATCCGCGAGACCCCTCAGTCGGTCAGCGTGGTCACCCGCCAGCGCATGGACGACCAGGGC
ATGCGCGACCTCAACGACGCGGTGAAGGGCGTCACCGGCCTCACCGTGCAACAGTACGGGCCGGCCCGGGTG
AAGTACGCGGCGCGCGGCTTCGACGTCGACAACATCATGTACGACGGCCTGCCGACGAGCATTTCCACCTAT
ACCCAGGACGTCATTTCCGCCGCCGACCTGGCCATGTTCGACCGCGTCGAAGTGGTGCGCGGTGCCACCGGC
CTGATGCAGGGCGCAGGCAACCCGGCGGCGGCGATCAACATGGTGCGCAAGCGTCCGACCCAGGACTTCCGC
GCCTCCCTGCAAGGCAGCGTCGGCACCTGGGACCGCTATCGCAGCGAGGCCGACGTTTCCGGTCCGCTGAAC
AGCGAAGGAACCCTGCGCGGCCGCGCGGTGGTCGCCTACCAGAAAGGCAACAGTTTCCAGGACCACGTCAGC
AGCGAACGCGGCGTGTTCTACGGGATCGCCGAAGCCGACCTGAGCCCGGACACCACCTTCGCCATCGGCGCC
TCGAACCAGAACGACAACCGCAACGACAACTGGGTAGGCCTGCCCAGCCCGCTGGGCGGCCGCCACCTGGAC
CTCAAGCGCTCGTCCTACTACGGCGCCGACTGGTCCTACTGGGATACCGACACCACCCACCTGTTCAGCGAC
CTGACCCACCGCTTCGCCAACGGTTGGCAGATGAAGCTGGCCGCCGACAAGCTGTGGGCGCGAATCAACATG
CTCGGGCTGTACAACGACTGCTACTACTCGACCACCGGCTGCGCCAGCATGACCCAGAACCCCGGCGACTAC
AGCTACACCGACGACCACGACAGCTATGACGCCTATGCCAACGGTCCCTTCCAGTTGCTCGGCCGCGAGCAC
GAGCTGGTGGTCGGCGCCAGCTATCGCCAGGAACGCTTCGACGGCCACGGCGGCTGGGGCAGCCTGTTCAAC
AAGGACGGCACCCCGACCGGGCCGATGGACCCGACCCAATGGGACCCGAGCTCGACTCTCAAGCCGAGGCTG
AACACCAGCCTGTGGGGCATGAAGCTCGACCAGGAACAGAAAGGCGCCTACCTCACCACCCGGTTGAACCTC
GCCGACCCGCTGAAAGTGATCCTCGGCGGGCGCCTGGACTGGTACAAGGCCGACGCCGATACCGACAGCTAC
AAGGTCACCCGCAACGTCACCCGCTATGCCGGGGTGATCTACGACCTGAACCAGACCTACTCGGTCTACGCC
AGCTATACCGACATCTTCAAGCCGCAGAGCAACTTCGACGCCGGCGGCGGCCTGCTCGACCCGATCACCGGC
AAGAACTACGAGATCGGCCTGAAGGGCGAACACTTCGGCGGCGCGCTCAATTCGCAGATCGCGCTGTTCCAG
ATCGACCAGGAAAACCGCGCCACCGAGGACGTCGGCGGCCCCTCGCCATGCCCCTTCAGCCCCACCTCGCGC
TATTGCTCGCGCGCTTCGGGCAAGGTCCGCAGCCAGGGCGTCGACCTGGAGCTGAGCGGTGCGCTGAGCGAC
GACTGGCAGATGATGGCCGGCTATACCTACGTCGACGCCAAGTACAAGCACGACAGCAACAAGGCCAACGAG
GGCAAGCCATTCGACGCGGCCAAGCCACGCCACCTGTTCAAGCTCGCCACCAGCTACACGCTACCCGGCGAA
CTGCACAAATGGCGCGTCGGCGGCGACCTGGCCACCCAGAGCAAGACCGAGGACAGCAGCACCGGTTTCCAG
CAGGGCGGCTACACCGTGGTCAATGCCATGCTCGGCTACAAGGTCAACGAACGGATCGACACGCGGCTGAAC
TTCAACAACCTGTTCGACAAGTACTATTACAGCGGCATCGACTTCGGCAACCTCAACTACGGCGAGCCGCGC
AACCTGATGTTCACGGTGAAGTACTCGCTCTGA
Translation:
MKHVVSSALLLGLSSLSLAAQAAPIALDLPAQPLAASLEQLQGASGLRIRFDRAAVADRRAPALRGTLEPSE
ALQRLLAGSGLSGEVRGGDAWVEAAPTGAGIAPGDSVDLGALSVVATQDPATAAITEDSGSYTTRAMRTSTK
LAMSIRETPQSVSVVTRQRMDDQGMRDLNDAVKGVTGLTVQQYGPARVKYAARGFDVDNIMYDGLPTSISTY
TQDVISAADLAMFDRVEVVRGATGLMQGAGNPAAAINMVRKRPTQDFRASLQGSVGTWDRYRSEADVSGPLN
SEGTLRGRAVVAYQKGNSFQDHVSSERGVFYGIAEADLSPDTTFAIGASNQNDNRNDNWVGLPSPLGGRHLD
LKRSSYYGADWSYWDTDTTHLFSDLTHRFANGWQMKLAADKLWARINMLGLYNDCYYSTTGCASMTQNPGDY
SYTDDHDSYDAYANGPFQLLGREHELVVGASYRQERFDGHGGWGSLFNKDGTPTGPMDPTQWDPSSTLKPRL
NTSLWGMKLDQEQKGAYLTTRLNLADPLKVILGGRLDWYKADADTDSYKVTRNVTRYAGVIYDLNQTYSVYA
SYTDIFKPQSNFDAGGGLLDPITGKNYEIGLKGEHFGGALNSQIALFQIDQENRATEDVGGPSPCPFSPTSR
YCSRASGKVRSQGVDLELSGALSDDWQMMAGYTYVDAKYKHDSNKANEGKPFDAAKPRHLFKLATSYTLPGE
LHKWRVGGDLATQSKTEDSSTGFQQGGYTVVNAMLGYKVNERIDTRLNFNNLFDKYYYSGIDFGNLNYGEPR
NLMFTVKYSL*
AnnotationID:178GeneID:168
AnnotatorUID: danlee
Modification Date/Time: 2005-10-24 13:01:30
Gene Name:fpvB
Confidence Code:1
GeneProduct:type I ferripyoverdine receptor, FpvB
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:Fe(III) updatke
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:putative outer membrane ferripyoverdine receptor
Functional Category Confidence Code:5
COGs:COG4773,cd01347,pfam00593
Secondary Functional Category(ies):membrane protein
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAN69798.1|AE016617_1 (AE016789) outer membrane ferripyoverdine receptor [Pseudomonas
           putida KT2440]
          Length = 812

 Score =  746 bits (1927), Expect = 0.0
 Identities = 402/822 (48%), Positives = 525/822 (63%), Gaps = 56/822 (6%)

>gb|AAO57161.1| (AE016869) TonB-dependent siderophore receptor [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 722

 Score =  596 bits (1537), Expect = e-169
 Identities = 335/716 (46%), Positives = 430/716 (60%), Gaps = 44/716 (6%)

Structural Features:
COG4773, FhuE, Outer membrane receptor for ferric coprogen 
and ferric-rhodotorulic acid 
[Inorganic ion transport and metabolism]
CD-Length = 719 residues, 100.0% aligned
Score =  846 bits (2188), Expect = 0.0
Identities = 362/765 (47%), Positives = 456/765 (59%), Gaps = 52/765 (6%)

cd01347, ligand_gated_channel
CD-Length = 672 residues,  99.9% aligned
Score =  302 bits (775), Expect = 9e-83

pfam00593, TonB_dep_Rec, TonB dependent receptor.
CD-Length = 712 residues,  99.9% aligned
Score =  266 bits (681), Expect = 6e-72
Identities = 182/724 (25%), Positives = 265/724 (36%), Gaps = 85/724 (11%)
Genomic Context:
Comment:
ReferenceID:339
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:17481
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:36904
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:168_cdd.html
URL:
ReferenceID:38229
Author/Investigator(s): Ghysels B, Dieu BT, Beatson SA, Pirnay JP, Ochsner UA, Vasil ML, Cornelis P.
Title: FpvB, an alternative type I ferripyoverdine receptor of Pseudomonas aeruginosa.
PubMed: 15184553
MedLine:
Source:
Microbiology. 2004 Jun;150(Pt 6):1671-80.
Reference Type:Journal
Data:
URL:
Homologs By Global Alignment
Gene ID:168

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
303 PA4168_tr translation of PA4168 802 99.75 99.87 0 4200.0
19326 gb|AAG07555.1|AE004833_6 (AE004833) probable TonB-dependent receptor [Pseudomonas aeruginosa PAO1] 802 99.75 99.87 0 4200.0
19327 gb|AAN69798.1|AE016617_1 (AE016789) outer membrane ferripyoverdine receptor [Pseudomonas putida KT2440] 852 47.76 62.08 90 1974.0
19328 gb|AAO57161.1| (AE016869) TonB-dependent siderophore receptor [Pseudomonas syringae pv. tomato str. DC3000] 837 42.53 54.71 150 1582.0
19329 gb|AAN66294.1|AE016257_10 (AE016776) outer membrane ferric siderophore receptor [Pseudomonas putida KT2440] 845 41.89 57.63 78 1583.0
GC ORFID: 43170How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA4168Glimmer Score:
Start: 4095094Stop: 4097502
Length: 2409
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA4168 translation of PA4168Homolog Bit Score 1622.0
Other Homologs: psyr_15may02_Scaffold1_revised_gene613 (ORF: BLASTX 584.0), t_PA4168 (ORF: GLIMMER)
GC ORF Sequence
ATGAAACACGTCGTTTCCAGTGCGTTATTGCTCGGTCTCTCCTCGCTTTCCCTGGCCGCCCAGGCCGCTCCC
ATCGCCCTTGACCTTCCCGCCCAGCCCCTGGCCGCATCCCTCGAGCAATTGCAGGGCGCCAGCGGCCTGCGC
ATCCGTTTCGACCGCGCGGCCGTGGCCGACCGGCGCGCACCGGCCCTACGCGGCACGCTGGAGCCGAGCGAG
GCACTGCAGCGTCTGCTCGCAGGTTCCGGACTGAGCGGGGAGGTACGGGGCGGCGACGCCTGGGTCGAGGCC
GCGCCGACAGGTGCCGGCATCGCCCCCGGCGACAGCGTCGACCTCGGCGCGCTCAGCGTGGTCGCCACCCAG
GACCCGGCCACCGCCGCCATCACCGAAGACAGCGGCTCCTACACCACCCGGGCGATGCGCACCTCGACCAAG
CTGGCGATGTCGATCCGCGAGACCCCTCAGTCGGTCAGCGTGGTCACCCGCCAGCGCATGGACGACCAGGGC
ATGCGCGACCTCAACGACGCGGTGAAGGGCGTCACCGGCCTCACCGTGCAACAGTACGGGCCGGCCCGGGTG
AAGTACGCGGCGCGCGGCTTCGACGTCGACAACATCATGTACGACGGCCTGCCGACGAGCATTTCCACCTAT
ACCCAGGACGTCATTTCCGCCGCCGACCTGGCCATGTTCGACCGCGTCGAAGTGGTGCGCGGTGCCACCGGC
CTGATGCAGGGCGCAGGCAACCCGGCGGCGGCGATCAACATGGTGCGCAAGCGTCCGACCCAGGACTTCCGC
GCCTCCCTGCAAGGCAGCGTCGGCACCTGGGACCGCTATCGCAGCGAGGCCGACGTTTCCGGTCCGCTGAAC
AGCGAAGGAACCCTGCGCGGCCGCGCGGTGGTCGCCTACCAGAAAGGCAACAGTTTCCAGGACCACGTCAGC
AGCGAACGCGGCGTGTTCTACGGGATCGCCGAAGCCGACCTGAGCCCGGACACCACCTTCGCCATCGGCGCC
TCGAACCAGAACGACAACCGCAACGACAACTGGGTAGGCCTGCCCAGCCCGCTGGGCGGCCGCCACCTGGAC
CTCAAGCGCTCGTCCTACTACGGCGCCGACTGGTCCTACTGGGATACCGACACCACCCACCTGTTCAGCGAC
CTGACCCACCGCTTCGCCAACGGTTGGCAGATGAAGCTGGCCGCCGACAAGCTGTGGGCGCGAATCAACATG
CTCGGGCTGTACAACGACTGCTACTACTCGACCACCGGCTGCGCCAGCATGACCCAGAACCCCGGCGACTAC
AGCTACACCGACGACCACGACAGCTATGACGCCTATGCCAACGGTCCCTTCCAGTTGCTCGGCCGCGAGCAC
GAGCTGGTGGTCGGCGCCAGCTATCGCCAGGAACGCTTCGACGGCCACGGCGGCTGGGGCAGCCTGTTCAAC
AAGGACGGCACCCCGACCGGGCCGATGGACCCGACCCAATGGGACCCGAGCTCGACTCTCAAGCCGAGGCTG
AACACCAGCCTGTGGGGCATGAAGCTCGACCAGGAACAGAAAGGCGCCTACCTCACCACCCGGTTGAACCTC
GCCGACCCGCTGAAAGTGATCCTCGGCGGGCGCCTGGACTGGTACAAGGCCGACGCCGATACCGACAGCTAC
AAGGTCACCCGCAACGTCACCCGCTATGCCGGGGTGATCTACGACCTGAACCAGACCTACTCGGTCTACGCC
AGCTATACCGACATCTTCAAGCCGCAGAGCAACTTCGACGCCGGCGGCGGCCTGCTCGACCCGATCACCGGC
AAGAACTACGAGATCGGCCTGAAGGGCGAACACTTCGGCGGCGCGCTCAATTCGCAGATCGCGCTGTTCCAG
ATCGACCAGGAAAACCGCGCCACCGAGGACGTCGGCGGCCCCTCGCCATGCCCCTTCAGCCCCACCTCGCGC
TATTGCTCGCGCGCTTCGGGCAAGGTCCGCAGCCAGGGCGTCGACCTGGAGCTGAGCGGTGCGCTGAGCGAC
GACTGGCAGATGATGGCCGGCTATACCTACGTCGACGCCAAGTACAAGCACGACAGCAACAAGGCCAACGAG
GGCAAGCCATTCGACGCGGCCAAGCCACGCCACCTGTTCAAGCTCGCCACCAGCTACACGCTACCCGGCGAA
CTGCACAAATGGCGCGTCGGCGGCGACCTGGCCACCCAGAGCAAGACCGAGGACAGCAGCACCGGTTTCCAG
CAGGGCGGCTACACCGTGGTCAATGCCATGCTCGGCTACAAGGTCAACGAACGGATCGACACGCGGCTGAAC
TTCAACAACCTGTTCGACAAGTACTATTACAGCGGCATCGACTTCGGCAACCTCAACTACGGCGAGCCGCGC
AACCTGATGTTCACGGTGAAGTACTCGCTCTGA