ViewGene
Locus Name:
GeneID:
Location:

GeneID:1679
TrivialName: PA14_50790
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_50790
PAO1 Ortholog Locus:PA1050
Sequence Length:1113
Protein Length:370
Start: 4512887
Stop: 4511775
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04439.1|AE004537_4 (AE004537) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 370/370 (100%), Positives = 370/370 (100%)
Sequence:
ATGTTCGAACTGGATTCGACGCTGGCGCAGCACATCGTCGATCGGGCGATGGCGATCCTGCCGCACAACATC
AATGTGATGGATGCCCAGGGCATGATCATCGGCAGCGGCGATCCATCGCGCCTGCATACCCGCCACGAAGGG
GCGCAACTGGTGCTGGCCAACCGGCGGGTGGTGGAAATCGACGAGCAGGCCGCCGCCTGCCTGCGCGGGGTG
CGGCCAGGGGTGAACCTGCCGTTGCTGCACGCCGAGCGGCTGGTCGGCGTGCTCGGCATCACCGGCGCGCCG
GAGGTGGTCCGGCCCTATGCCGAGCTGGTGCGGATGGCAGCGGAAATGCTCATGGAACAGCGCCAGATGCAG
GACGAGCGACACTGGCAACGCCAGCGTCACGAAGCCTGGCTGCGCCAGTTGCTCGATCCCGGCCACGGCCTC
GGGGCGCTGGCGGCCGATGCCGAACACCTGGGGCTGGCCATGCACTGGCCGCGCCAGGCGGTCTTCCTGGAG
CTGCCCGAGCATGCCGATCCGCTGCCTTGCCAGGCTCGCCTGCTGGCGGCACTCGGCGGCCGGGCGGAGCAC
TGGAGCGCGGCGCTGGGCGAGCGCCTGGTGTTCTGGTGCCGGCCGGTAGCCCACGCAGATACGCTCGAGCAC
TGGCTGGAGCGCGCCGACGCGCGCGGCTGGGGCGTGGCGCGCCTGTGTGCCGGCGACCCGGCGCATGACCTG
GCCGAGCTGCGCGCCTCGGCCTGCGCCGCGCGCGACCTGCTGGACTATGCGCGCAGCCGGTTGCCCGGTCGG
CGGGTCGTGACCCTGGACGGACACCGCCTCGCCAGCCTGCTGTTCAGCCAGCGCGACAGTTGGCAGGTGCGG
CAGCTGCTGGCGCCCTTGCAGCGGTTGCTCGACCACGATCCGCAAGGTTCGCTGGCCGCTACCCTGGAGTCC
TGGTGCGCCCATGACGGGCACGCCCAGGCCTGTGCCCAGGCGCTGGGAATCCATCGCAACAGCCTGCGCTAC
CGACTGGAGCGCATCGCTTCGATCAGCGGGCTCGATCTCGCTCGCCTGGAGCACCGCCAGCAATTGTTGCTG
GGGCTGCAATTGCTCGTTCCGCGCCGCGGGTAA
Translation:
MFELDSTLAQHIVDRAMAILPHNINVMDAQGMIIGSGDPSRLHTRHEGAQLVLANRRVVEIDEQAAACLRGV
RPGVNLPLLHAERLVGVLGITGAPEVVRPYAELVRMAAEMLMEQRQMQDERHWQRQRHEAWLRQLLDPGHGL
GALAADAEHLGLAMHWPRQAVFLELPEHADPLPCQARLLAALGGRAEHWSAALGERLVFWCRPVAHADTLEH
WLERADARGWGVARLCAGDPAHDLAELRASACAARDLLDYARSRLPGRRVVTLDGHRLASLLFSQRDSWQVR
QLLAPLQRLLDHDPQGSLAATLESWCAHDGHAQACAQALGIHRNSLRYRLERIASISGLDLARLEHRQQLLL
GLQLLVPRRG*
AnnotationID:1688GeneID:1679
AnnotatorUID: danlee
Modification Date/Time: 2004-05-19 14:02:50
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA1050, yeaG
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG3835, pfam05651
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG3835, CdaR, Sugar diacid utilization regulator. Score: 454, 6e-129
pfam05651, Diacid_rec, Putative sugar diacid recognition. Score: 335, 4e-93






   
Genomic Context:






   
Comment:


















    ReferenceID:3361




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20508




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1679
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2961
                           PA1050_tr
                           translation of PA1050
                           370
                           99.99
                           99.99
                           0
                           1936.0
     

     
     
92526
                           gb|AAG04439.1|AE004537_4
                           (AE004537) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           370
                           99.99
                           99.99
                           0
                           1936.0
     

     
     
92528
                           gb|AAO56759.1|
                           (AE016867) carbohydrate diacid regulator, putative [Pseudomonas syringae pv. tomato str. DC3000]
                           375
                           48.00
                           60.80
                           17
                           801.0
     

     
     
92527
                           gb|AAN68785.1|AE016510_7
                           (AE016785) conserved hypothetical protein [Pseudomonas putida KT2440]
                           394
                           46.70
                           58.62
                           29
                           861.0
     

     






      

          
GC ORFID: 44681How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1050Glimmer Score: 

          
Start: 441021Stop: 442133

          
Length: 1113


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_PA1050 translation of PA1050Homolog Bit Score 750.0

          
Other Homologs:  psyr_15may02_Scaffold11_revised_gene1790 (ORF: BLASTX 301.0), t_PA1050 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTTCGAACTGGATTCGACGCTGGCGCAGCACATCGTCGATCGGGCGATGGCGATCCTGCCGCACAACATC 
AATGTGATGGATGCCCAGGGCATGATCATCGGCAGCGGCGATCCATCGCGCCTGCATACCCGCCACGAAGGG 
GCGCAACTGGTGCTGGCCAACCGGCGGGTGGTGGAAATCGACGAGCAGGCCGCCGCCTGCCTGCGCGGGGTG 
CGGCCAGGGGTGAACCTGCCGTTGCTGCACGCCGAGCGGCTGGTCGGCGTGCTCGGCATCACCGGCGCGCCG 
GAGGTGGTCCGGCCCTATGCCGAGCTGGTGCGGATGGCAGCGGAAATGCTCATGGAACAGCGCCAGATGCAG 
GACGAGCGACACTGGCAACGCCAGCGTCACGAAGCCTGGCTGCGCCAGTTGCTCGATCCCGGCCACGGCCTC 
GGGGCGCTGGCGGCCGATGCCGAACACCTGGGGCTGGCCATGCACTGGCCGCGCCAGGCGGTCTTCCTGGAG 
CTGCCCGAGCATGCCGATCCGCTGCCTTGCCAGGCTCGCCTGCTGGCGGCACTCGGCGGCCGGGCGGAGCAC 
TGGAGCGCGGCGCTGGGCGAGCGCCTGGTGTTCTGGTGCCGGCCGGTAGCCCACGCAGATACGCTCGAGCAC 
TGGCTGGAGCGCGCCGACGCGCGCGGCTGGGGCGTGGCGCGCCTGTGTGCCGGCGACCCGGCGCATGACCTG 
GCCGAGCTGCGCGCCTCGGCCTGCGCCGCGCGCGACCTGCTGGACTATGCGCGCAGCCGGTTGCCCGGTCGG 
CGGGTCGTGACCCTGGACGGACACCGCCTCGCCAGCCTGCTGTTCAGCCAGCGCGACAGTTGGCAGGTGCGG 
CAGCTGCTGGCGCCCTTGCAGCGGTTGCTCGACCACGATCCGCAAGGTTCGCTGGCCGCTACCCTGGAGTCC 
TGGTGCGCCCATGACGGGCACGCCCAGGCCTGTGCCCAGGCGCTGGGAATCCATCGCAACAGCCTGCGCTAC 
CGACTGGAGCGCATCGCTTCGATCAGCGGGCTCGATCTCGCTCGCCTGGAGCACCGCCAGCAATTGTTGCTG 
GGGCTGCAATTGCTCGTTCCGCGCCGCGGGTAA