ViewGene
Locus Name:
GeneID:
Location:

GeneID:1678
TrivialName: PA14_72210
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_72210
PAO1 Ortholog Locus:PA5471
Sequence Length:1140
Protein Length:379
Start: 6433616
Stop: 6432477
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08856.1|AE004959_12 (AE004959) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 373/379 (98%), Positives = 376/379 (99%)
Sequence:
ATGGGCAACTACATCAAGCCTTTGTCCGCGGGCGTCGCACTGATCGCCTCGGACAGCACCTGGATCGAAGGC
AAGGCGATCCAGCAACTGCAAACCACCGCCGAACTGGACGGCATGCGCCGCGTCGTCGGTCTCCCGGACCTG
CATCCCGGTCGCGGCTATCCGGTCGGCGCGGCGTTCTTCTCCGTCGGCCGCTTCTACCCGGCGCTGGTCGGC
AACGACATCGGCTGTGGCATGGCCCTGTGGGAAACCGGCCTGGCCCCCGGCAAGCTGTCGGCGGACAAACTG
GAAAAGCGCCTGGGCAATCTCGACCTGCCGCTGGACGAGACCTGGAACGATTGCATCGAAGCCCTGGAGCTG
CCGGCCCGCGAGCACTGGCGCGCGCTCGGCACGATCGGTGGCGGCAATCACTTCGCCGAACTACAGCAGGTC
GAGACCGTGTTCGACCAGGCTGCCCTGCACGCCCTCGGCCTCGATGCCGATCGCCTGCAACTGCTGGTGCAC
AGCGGCTCGCGCGGGCTCGGCCAGGCGATCCTGCAAGAGCATGTCAGCCTGCACGGCCACGCCGGCCTGCTC
GACGGCAGCCTGGAAGCTTCCGCCTACCTGGCGCGGCACGCCGATGCGTTGCGCTTCGCCGAGGGTAACCGC
CAGCTCATCGCCCGGCGCATTCTCGAACGCTTGCGCTGCGACGGCCTGGAACTGCTCGACGTCAACCACAAC
CTGGTGGCGCCGGCACAGGTCGATGGCGTCGACGGCTGGCTGCACCGCAAGGGCGCCACCCCGGCCGACCAG
GGTGTGCTGGTGATCCCCGGCTCGCGCGGCGACTACAGCTACCTGGTGGAGCCCGTGCCGAGCGCGCAGAGC
CTGTTCTCCCTGGCCCACGGCGCCGGTCGCAAATGGCAGCGCGGCGAGTGCCGGGAACGCCTGGCGGCGCGC
TTCAGCGTCGACCAGCTGGGCCGCACGCGCCTTGGTAGCCGGGTGATCTGCGGCGACCGCCAGCTGATCTAC
GAGGAAGCGCCGGAAGCCTACAAGGGTATCGACTCGGTGGTCGGCGCGCTGCTCGAAGCCGGCCTGCTGCGC
CTGGTCGCCCGCCTGAAGCCGGTGCTGACCTACAAGACCCGTGGGGAGTGCTGCCGATGA
Translation:
MGNYIKPLSAGVALIASDSTWIEGKAIQQLQTTAELDGMRRVVGLPDLHPGRGYPVGAAFFSVGRFYPALVG
NDIGCGMALWETGLAPGKLSADKLEKRLGNLDLPLDETWNDCIEALELPAREHWRALGTIGGGNHFAELQQV
ETVFDQAALHALGLDADRLQLLVHSGSRGLGQAILQEHVSLHGHAGLLDGSLEASAYLARHADALRFAEGNR
QLIARRILERLRCDGLELLDVNHNLVAPAQVDGVDGWLHRKGATPADQGVLVIPGSRGDYSYLVEPVPSAQS
LFSLAHGAGRKWQRGECRERLAARFSVDQLGRTRLGSRVICGDRQLIYEEAPEAYKGIDSVVGALLEAGLLR
LVARLKPVLTYKTRGECCR*
AnnotationID:1687GeneID:1678
AnnotatorUID: diggins
Modification Date/Time: 2005-03-21 06:06:06
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA5471
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:3359




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20506




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:34623




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1678_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1678
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2960
                           PA5471_tr
                           translation of PA5471
                           379
                           98.41
                           99.20
                           0
                           1940.0
     

     
     
92515
                           gb|AAG08856.1|AE004959_12
                           (AE004959) hypothetical protein PA5471 [Pseudomonas aeruginosa PAO1]
                           379
                           98.41
                           99.20
                           0
                           1940.0
     

     
     
92516
                           emb|CAD17851.1|
                           (AL646080) PROBABLE RTCB-LIKE PROTEIN [Ralstonia solanacearum]
                           379
                           69.65
                           78.62
                           0
                           1357.0
     

     
     
92517
                           gb|AAO70120.1|
                           (AE016842) conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Typhi Ty2]
                           381
                           63.77
                           74.54
                           4
                           1193.0
     

     
     
92518
                           emb|CAD08784.1|
                           (AL627266) conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Typhi]
                           381
                           63.77
                           74.54
                           4
                           1193.0
     

     






      

          
GC ORFID: 44680How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5471Glimmer Score: 

          
Start: 5697305Stop: 5696166

          
Length: 1140


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA5471 translation of PA5471Homolog Bit Score 751.0

          
Other Homologs:  t_PA5471 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGGCAACTACATCAAGCCTTTGTCCGCGGGCGTCGCACTGATCGCCTCGGACAGCACCTGGATCGAAGGC 
AAGGCGATCCAGCAACTGCAAACCACCGCCGAACTGGACGGCATGCGCCGCGTCGTCGGTCTCCCGGACCTG 
CATCCCGGTCGCGGCTATCCGGTCGGCGCGGCGTTCTTCTCCGTCGGCCGCTTCTACCCGGCGCTGGTCGGC 
AACGACATCGGCTGTGGCATGGCCCTGTGGGAAACCGGCCTGGCCCCCGGCAAGCTGTCGGCGGACAAACTG 
GAAAAGCGCCTGGGCAATCTCGACCTGCCGCTGGACGAGACCTGGAACGATTGCATCGAAGCCCTGGAGCTG 
CCGGCCCGCGAGCACTGGCGCGCGCTCGGCACGATCGGTGGCGGCAATCACTTCGCCGAACTACAGCAGGTC 
GAGACCGTGTTCGACCAGGCTGCCCTGCACGCCCTCGGCCTCGATGCCGATCGCCTGCAACTGCTGGTGCAC 
AGCGGCTCGCGCGGGCTCGGCCAGGCGATCCTGCAAGAGCATGTCAGCCTGCACGGCCACGCCGGCCTGCTC 
GACGGCAGCCTGGAAGCTTCCGCCTACCTGGCGCGGCACGCCGATGCGTTGCGCTTCGCCGAGGGTAACCGC 
CAGCTCATCGCCCGGCGCATTCTCGAACGCTTGCGCTGCGACGGCCTGGAACTGCTCGACGTCAACCACAAC 
CTGGTGGCGCCGGCACAGGTCGATGGCGTCGACGGCTGGCTGCACCGCAAGGGCGCCACCCCGGCCGACCAG 
GGTGTGCTGGTGATCCCCGGCTCGCGCGGCGACTACAGCTACCTGGTGGAGCCCGTGCCGAGCGCGCAGAGC 
CTGTTCTCCCTGGCCCACGGCGCCGGTCGCAAATGGCAGCGCGGCGAGTGCCGGGAACGCCTGGCGGCGCGC 
TTCAGCGTCGACCAGCTGGGCCGCACGCGCCTTGGTAGCCGGGTGATCTGCGGCGACCGCCAGCTGATCTAC 
GAGGAAGCGCCGGAAGCCTACAAGGGTATCGACTCGGTGGTCGGCGCGCTGCTCGAAGCCGGCCTGCTGCGC 
CTGGTCGCCCGCCTGAAGCCGGTGCTGACCTACAAGACCCGTGGGGAGTGCTGCCGATGA