ViewGene
Locus Name:
GeneID:
Location:

GeneID:1677
TrivialName: PA14_24150
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_24150
PAO1 Ortholog Locus:PA3093
Sequence Length:1119
Protein Length:372
Start: 2095272
Stop: 2094154
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06481.1|AE004733_8 (AE004733) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 370/372 (99%), Positives = 371/372 (99%)
Sequence:
ATGCGCAAGCTGATCTTCCTGATCCTCATCACCCTCTTCGCCGCCTACGCCGGCTGGGCCGAACGCCGCCCG
GTAGGCCACTACCTGTCCGACCTGCGCAGCCAGGTCAGCGTGGTCCAGGGCCAGCCCGGCGAGCGCGGCAAC
CTGCTGGCGGTCCAGCCGGAACTGTTCACGCCGGACTACCAGAGCGCCGAACGGTTGCAGCTGAAATTCCAC
GCCTACCTGGAAAATGCCCGCCGCCAGGGCCTGCTCAACGAGCGCACGGTGGTGGTGTTCCCCGAGCATGTC
GGCACCTGGCTGGTGGCCAGCGGCGAGAAGCCCGAGGTCTATGCCGCCGCCGACTGGCCCACGGCGATGGAC
TGGATGGCCGCGAGCAACCCGCTGAAGGTGGCGCGCGGCTGGATCACCGCGCGCGGCGAACAGCGTCTCACC
GACACCCTGTTCCGGATGAAGGCGGTGGACATGGCCCACGACTACCAGACCCTGTTCGGCGGGCTCGCCCAT
GATTTCAAGGTGACGGTGGTCGCCGGCTCCATCGTCCTGCCCGACCCCGAGGTCGAGGACGGCGAGCTGCGT
CCCGGCACCGGCCAGTTGTACAACGTCAGCCTGACCTTCGGTCCCGATGGCCGGCCGCTCGGCCAGCCGCAA
CGCAAGGTGTTCCCGACCCGCCACGAACTGAGCTACCTCAACAACGGTCGCGGCGAGCGCCTGCAGGTGCTG
GATACGCCGGCAGGACGCCTGGGCGTGCTGATCGGCACCGACAGCTGGTACCCGGACACCTACGCCACCCTG
GTCGAACAGCGCGTCGAACTGCTGGCGATCCCCGCCGCCCTGAACCAGAGCGGTCGCTGGCAGCAACCCTGG
CCCGGCTTCGATGCCGAGCTGGTTCCCGGCGACGTGCGCCTGGCGCCGAACAGCCTGAGCAACGCCGAGGCC
TGGCAGCGCCTGGCGGTCGGCGAGCGCCTGCTGGCCAGCGGTGCGCGCGGCGCCGCCGTGGCCTTCGCCCAT
AGCCGCCTGTGGAACGTCACCGAAGACGGCCAGAGCCTGCTCGGTTCGTCGCAGGGCATGCGCCAGGCCAAT
CCCGGCGGCGGTGCGCAACTGGTCAATCTCTGGCTATGA
Translation:
MRKLIFLILITLFAAYAGWAERRPVGHYLSDLRSQVSVVQGQPGERGNLLAVQPELFTPDYQSAERLQLKFH
AYLENARRQGLLNERTVVVFPEHVGTWLVASGEKPEVYAAADWPTAMDWMAASNPLKVARGWITARGEQRLT
DTLFRMKAVDMAHDYQTLFGGLAHDFKVTVVAGSIVLPDPEVEDGELRPGTGQLYNVSLTFGPDGRPLGQPQ
RKVFPTRHELSYLNNGRGERLQVLDTPAGRLGVLIGTDSWYPDTYATLVEQRVELLAIPAALNQSGRWQQPW
PGFDAELVPGDVRLAPNSLSNAEAWQRLAVGERLLASGARGAAVAFAHSRLWNVTEDGQSLLGSSQGMRQAN
PGGGAQLVNLWL*
AnnotationID:1686GeneID:1677
AnnotatorUID: diggins
Modification Date/Time: 2006-01-15 17:05:33
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA3093
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO57273.1| (AE016869) hydrolase, carbon-nitrogen family [Pseudomonas syringae
           pv. tomato str. DC3000]
          Length = 377

 Score =  356 bits (914), Expect = 1e-97
 Identities = 180/374 (48%), Positives = 238/374 (63%), Gaps = 11/374 (2%)








 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:3357




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20504




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1677
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2959
                           PA3093_tr
                           translation of PA3093
                           372
                           99.46
                           99.73
                           0
                           1940.0
     

     
     
92511
                           gb|AAG06481.1|AE004733_8
                           (AE004733) hypothetical protein PA3093 [Pseudomonas aeruginosa PAO1]
                           372
                           99.46
                           99.73
                           0
                           1940.0
     

     
     
92512
                           gb|AAO57273.1|
                           (AE016869) hydrolase, carbon-nitrogen family [Pseudomonas syringae pv. tomato str. DC3000]
                           385
                           48.57
                           63.63
                           21
                           930.0
     

     
     
92513
                           gb|AAN67619.1|AE016391_10
                           (AE016781) conserved hypothetical protein [Pseudomonas putida KT2440]
                           376
                           46.27
                           59.84
                           8
                           851.0
     

     
     
92514
                           gb|AAC83366.1|
                           (AF092918) unknown [Pseudomonas alcaligenes]
                           376
                           46.01
                           61.17
                           26
                           812.0
     

     






      

          
GC ORFID: 44679How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3093Glimmer Score: 

          
Start: 2858659Stop: 2859777

          
Length: 1119


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3093 translation of PA3093Homolog Bit Score 751.0

          
Other Homologs:  t_PA3093 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCGCAAGCTGATCTTCCTGATCCTCATCACCCTCTTCGCCGCCTACGCCGGCTGGGCCGAACGCCGCCCG 
GTAGGCCACTACCTGTCCGACCTGCGCAGCCAGGTCAGCGTGGTCCAGGGCCAGCCCGGCGAGCGCGGCAAC 
CTGCTGGCGGTCCAGCCGGAACTGTTCACGCCGGACTACCAGAGCGCCGAACGGTTGCAGCTGAAATTCCAC 
GCCTACCTGGAAAATGCCCGCCGCCAGGGCCTGCTCAACGAGCGCACGGTGGTGGTGTTCCCCGAGCATGTC 
GGCACCTGGCTGGTGGCCAGCGGCGAGAAGCCCGAGGTCTATGCCGCCGCCGACTGGCCCACGGCGATGGAC 
TGGATGGCCGCGAGCAACCCGCTGAAGGTGGCGCGCGGCTGGATCACCGCGCGCGGCGAACAGCGTCTCACC 
GACACCCTGTTCCGGATGAAGGCGGTGGACATGGCCCACGACTACCAGACCCTGTTCGGCGGGCTCGCCCAT 
GATTTCAAGGTGACGGTGGTCGCCGGCTCCATCGTCCTGCCCGACCCCGAGGTCGAGGACGGCGAGCTGCGT 
CCCGGCACCGGCCAGTTGTACAACGTCAGCCTGACCTTCGGTCCCGATGGCCGGCCGCTCGGCCAGCCGCAA 
CGCAAGGTGTTCCCGACCCGCCACGAACTGAGCTACCTCAACAACGGTCGCGGCGAGCGCCTGCAGGTGCTG 
GATACGCCGGCAGGACGCCTGGGCGTGCTGATCGGCACCGACAGCTGGTACCCGGACACCTACGCCACCCTG 
GTCGAACAGCGCGTCGAACTGCTGGCGATCCCCGCCGCCCTGAACCAGAGCGGTCGCTGGCAGCAACCCTGG 
CCCGGCTTCGATGCCGAGCTGGTTCCCGGCGACGTGCGCCTGGCGCCGAACAGCCTGAGCAACGCCGAGGCC 
TGGCAGCGCCTGGCGGTCGGCGAGCGCCTGCTGGCCAGCGGTGCGCGCGGCGCCGCCGTGGCCTTCGCCCAT 
AGCCGCCTGTGGAACGTCACCGAAGACGGCCAGAGCCTGCTCGGTTCGTCGCAGGGCATGCGCCAGGCCAAT 
CCCGGCGGCGGTGCGCAACTGGTCAATCTCTGGCTATGA