ViewGene

Locus Name:
GeneID:
Location:

GeneID:1676
TrivialName: PA14_44590
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_44590
PAO1 Ortholog Locus:PA1535
Sequence Length:1149
Protein Length:382
Start: 3970319
Stop: 3969171
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04924.1|AE004582_2 (AE004582) probable acyl-CoA dehydrogenase [Pseudomonas aeruginosa PAO1]
Identities = 381/382 (99%), Positives = 382/382 (100%)
Sequence:
ATGACTGACTTCCAGCAGTACTTCGACGAGTCCCATCAACTGATCCGGGATTCGGTGCGCCGTTTCGTCGAG
CGCGAGGTGTTGCCGCACATCGATGAATGGGAGGAGGCCGAGGAATTTCCCCGTGAACTCTATCTCAAGGCC
GGCGCGGCCGGGATCCTCGGCATCGGCTACCCGGAAGCCTACGGCGGCAGTTGCGAAGGCGATCTGTTCGCC
AAGGTGGCGGCCAGCGAAGAGCTCATGCGCTGCGGTTCCGGCGGCTTGGTCGCCGGGTTGGGATCGCTGGAT
ATCGGCTTGCCTCCGGTGGTCAAGTGGGCCCGTCCCGAGGTGCGCGAGCGGGTGGTGCCGGCGGTGCTGCGC
GGCGAGAAGATCATGGCCCTGGCGGTCACCGAGCCCTCTGGCGGCTCCGACGTGGCCAACCTGAAGACCCGT
GCGGTGCGCGATGGCGATCACTATCGCGTCAGCGGCAGCAAGACCTTCATCACCAGCGGCGTGCGCGCGGAC
TACTACACGGTGGCGGTGCGTACCGGCGGCGAGGGTTTCGCCGGCATCAGCCTGCTGCTGGTGGAGAAGGGC
ACTGCCGGGTTCAGTGTCGGCCGCAAGCTGAAGAAGATGGGCTGGTGGGCGTCGGATACCGCCGAACTGTTC
TTCGACGACTGCCGGGTGCCTGCGGAAAACCTGATCGGCGTGGAGAACGCTGGCTTCGCCTGCATCATGGCC
AATTTCCAGAGCGAGCGCCTGGCCCTGGCGGTGATGGCCAACATGACCGCGCAACTGGCTCTGGAGGAGTCG
CTGCGCTGGGCGCGCGAGCGAGAAGCGTTCGGCAAGCCGATCGGCAAGTTCCAGGTGCTGCGCCATCGTCTC
GCGGAAATGGCCACGCAACTGGAGGTTTCCCGCGAGTTCACCTATCGCCAGGCAGCGAAGATGGCTGCCGGC
AAGAGCGTGATCAAGGAGATATCGATGGCCAAGAACTTCGCTACCGATGTCGCCGATCGCCTGACCTATGAT
GCCGTGCAGGTGCTCGGCGGCATGGGCTACATGCGCGAAAGCCTGGTGGAGCGGCTGTATCGCGACAACCGG
ATTCTCTCCATCGGCGGCGGTTCGCGGGAAATCATGAACGAGATCATCGGCAAGCAGATGGGGTTGTAG
Translation:
MTDFQQYFDESHQLIRDSVRRFVEREVLPHIDEWEEAEEFPRELYLKAGAAGILGIGYPEAYGGSCEGDLFA
KVAASEELMRCGSGGLVAGLGSLDIGLPPVVKWARPEVRERVVPAVLRGEKIMALAVTEPSGGSDVANLKTR
AVRDGDHYRVSGSKTFITSGVRADYYTVAVRTGGEGFAGISLLLVEKGTAGFSVGRKLKKMGWWASDTAELF
FDDCRVPAENLIGVENAGFACIMANFQSERLALAVMANMTAQLALEESLRWAREREAFGKPIGKFQVLRHRL
AEMATQLEVSREFTYRQAAKMAAGKSVIKEISMAKNFATDVADRLTYDAVQVLGGMGYMRESLVERLYRDNR
ILSIGGGSREIMNEIIGKQMGL*
AnnotationID:1685GeneID:1676
AnnotatorUID: diggins
Modification Date/Time: 2005-05-30 07:07:43
Gene Name:
Confidence Code:3
GeneProduct:putative acyl-CoA dehydrogenase
Cell Localization:()
Synonyms:PA1535
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:cd01160,cd01158,cd00567,cd01156
Secondary Functional Category(ies):fatty acid and phospholipid metabolism
EC Number:1.3.99.3
Status:ACTIVE
Pathway:
Homology:
>dbj|BAC46246.1| (AP005938) acyl-CoA dehydrogenase [Bradyrhizobium japonicum USDA
           110]
          Length = 409

 Score =  405 bits (1041), Expect = e-112
 Identities = 205/376 (54%), Positives = 263/376 (69%), Gaps = 2/376 (0%)

>gb|AAN38728.1| (AF513500) putative acyl CoA dehydrogenase [Mycobacterium
           abscessus]
          Length = 399

 Score =  370 bits (951), Expect = e-102
 Identities = 193/363 (53%), Positives = 248/363 (68%)

>emb|CAE36160.1| (BX640424) acyl-CoA dehydrogenase [Bordetella parapertussis]
          Length = 385

 Score =  322 bits (825), Expect = 2e-87
 Identities = 174/374 (46%), Positives = 237/374 (63%), Gaps = 4/374 (1%)

Structural Features:
cd01160, LCAD, Long chain acyl-CoA dehydrogenase (LCAD)
CD-Length = 372 residues, 100.0% aligned
Score =  430 bits (1107), Expect = 1e-121

cd01158, SCAD/SBCAD, Short chain acyl-CoA dehydrogenase (SCAD). 
CD-Length = 373 residues,  99.5% aligned
Score =  339 bits (870), Expect = 4e-94

cd00567, ACAD, Acyl-CoA dehydrogenase (ACAD). 
CD-Length = 369 residues, 100.0% aligned
Score =  323 bits (828), Expect = 3e-89

cd01156, IVD, Isovaleryl-CoA dehydrogenase (IVD) 
CD-Length = 376 residues,  99.2% aligned
Score =  291 bits (747), Expect = 8e-80
Genomic Context:
Comment:
ReferenceID:3355
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:20502
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:37316
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:1676_cdd.html
URL:
Homologs By Global Alignment
Gene ID:1676

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
2956 PA1535_tr translation of PA1535 382 99.73 99.99 0 1939.0
92488 gb|AAG04924.1|AE004582_2 (AE004582) probable acyl-CoA dehydrogenase [Pseudomonas aeruginosa PAO1] 382 99.73 99.99 0 1939.0
92490 emb|CAE27578.1| (BX572599) probable acyl-CoA dehydrogenase [Rhodopseudomonas palustris CGA009] 383 53.00 68.92 5 1012.0
92489 dbj|BAC46246.1| (AP005938) acyl-CoA dehydrogenase [Bradyrhizobium japonicum USDA 110] 413 49.87 63.92 35 1037.0
92491 gb|AAN38728.1| (AF513500) putative acyl CoA dehydrogenase [Mycobacterium abscessus] 400 49.25 64.25 19 947.0
GC ORFID: 44678How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA1535Glimmer Score:
Start: 983590Stop: 984738
Length: 1149
Start Codon: ATGTruncated Start:
Stop Codon: TAGTruncated Stop:
Homolog: t_PA1535 translation of PA1535Homolog Bit Score 751.0
Other Homologs: t_PA4435 (ORF: BLASTX 276.0), t_PA1187 (ORF: BLASTX 267.0), t_PA1535 (ORF: GLIMMER)
GC ORF Sequence
ATGACTGACTTCCAGCAGTACTTCGACGAGTCCCATCAACTGATCCGGGATTCGGTGCGCCGTTTCGTCGAG
CGCGAGGTGTTGCCGCACATCGATGAATGGGAGGAGGCCGAGGAATTTCCCCGTGAACTCTATCTCAAGGCC
GGCGCGGCCGGGATCCTCGGCATCGGCTACCCGGAAGCCTACGGCGGCAGTTGCGAAGGCGATCTGTTCGCC
AAGGTGGCGGCCAGCGAAGAGCTCATGCGCTGCGGTTCCGGCGGCTTGGTCGCCGGGTTGGGATCGCTGGAT
ATCGGCTTGCCTCCGGTGGTCAAGTGGGCCCGTCCCGAGGTGCGCGAGCGGGTGGTGCCGGCGGTGCTGCGC
GGCGAGAAGATCATGGCCCTGGCGGTCACCGAGCCCTCTGGCGGCTCCGACGTGGCCAACCTGAAGACCCGT
GCGGTGCGCGATGGCGATCACTATCGCGTCAGCGGCAGCAAGACCTTCATCACCAGCGGCGTGCGCGCGGAC
TACTACACGGTGGCGGTGCGTACCGGCGGCGAGGGTTTCGCCGGCATCAGCCTGCTGCTGGTGGAGAAGGGC
ACTGCCGGGTTCAGTGTCGGCCGCAAGCTGAAGAAGATGGGCTGGTGGGCGTCGGATACCGCCGAACTGTTC
TTCGACGACTGCCGGGTGCCTGCGGAAAACCTGATCGGCGTGGAGAACGCTGGCTTCGCCTGCATCATGGCC
AATTTCCAGAGCGAGCGCCTGGCCCTGGCGGTGATGGCCAACATGACCGCGCAACTGGCTCTGGAGGAGTCG
CTGCGCTGGGCGCGCGAGCGAGAAGCGTTCGGCAAGCCGATCGGCAAGTTCCAGGTGCTGCGCCATCGTCTC
GCGGAAATGGCCACGCAACTGGAGGTTTCCCGCGAGTTCACCTATCGCCAGGCAGCGAAGATGGCTGCCGGC
AAGAGCGTGATCAAGGAGATATCGATGGCCAAGAACTTCGCTACCGATGTCGCCGATCGCCTGACCTATGAT
GCCGTGCAGGTGCTCGGCGGCATGGGCTACATGCGCGAAAGCCTGGTGGAGCGGCTGTATCGCGACAACCGG
ATTCTCTCCATCGGCGGCGGTTCGCGGGAAATCATGAACGAGATCATCGGCAAGCAGATGGGGTTGTAG