ViewGene
Locus Name:
GeneID:
Location:

GeneID:1675
TrivialName: PA14_53950
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_53950
PAO1 Ortholog Locus:PA0795
Sequence Length:1128
Protein Length:375
Start: 4783274
Stop: 4784401
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04184.1|AE004514_7 (AE004514) citrate synthase 2 [Pseudomonas aeruginosa PAO1]
Identities = 375/375 (100%), Positives = 375/375 (100%)
Sequence:
ATGGCTGAAGCAAAAGTACTGAGTGGCGCCGGCCTGCGTGGCCAGGTGGCCGGCCAGACAGCCCTGTCCACC
GTCGGCCAGGAAGGCGCCGGCCTGACCTACCGTGGCTACGACGTCCGCGACCTGGCGGCGGCGGCGATCTTC
GAGGAAGTCGCCTACCTGCTGCTCTACGGCGAACTGCCGAACAAGCAACAGCTCGACGCCTACCTGAAGAAG
CTCCAGGGCCAGCGCGACCTGCCGCAGGCGCTGAAGGAAGTTCTCGAACGGATTCCCAAGGACGCCCACCCG
ATGGACGTGATGCGCACTGGCGCCTCGGTCCTCGGCACCCTGGAACCGGAGCTGAGCTTCGACCAGCAGCGC
GACGTCGCCGACCGCCTGCTCGCCGCCTTCCCGGCGATCATGACCTACTGGTACCGCTTCACCCACGAAGGC
CAGCGCATCGACTGCAACAGCGACGAGCCGACCATCGGCGGGCACTTCCTCGCCCTGCTCCACGGCAAGAAG
CCCAGCGAGCTGCACGTGAAGGTGATGAACGTCTCGCTGATCCTCTACGCCGAGCATGAGTTCAACGCATCC
ACCTTCACCGCGCGGGTTTGCGCCTCGACCCTGTCCGACCTGTACTCCTGCGTCACCGGCGCCATCGGCTCG
CTGCGCGGCCCGCTGCACGGCGGCGCCAACGAGGCGGCGATGGAACTGATCGAACGCTTCTCTTCGCCGCAG
GAAGCCACCGCCGAGCTGCTGAAGATGCTCGAGCGCAAGGACAAGATCATGGGCTTCGGGCATGCCATCTAC
AAGGATTCCGACCCACGCAACGAAGTGATCAAGGGTTGGTCGAAGCAGCTCGCCGACGAGGTCGGCGACAAG
GTCCTGTTCGCGGTTTCCGAGGCCATCGACAAGACCATGTGGGAGCAGAAGAAGCTGTTCCCCAACGCCGAC
TTCTACCACGCCTCGGCGTATCACTTCATGGGCATCCCGACCAAGCTGTTCACGCCGATATTCGTCTGCTCG
CGGACCAGCGGCTGGACCGCCCACGTCTTCGAACAGCGCGCCAACAACCGCATCATCCGCCCGAGCGCCGAG
TACACCGGCGTCGAGCAGCGCGCGTTCGTGCCGCTGGAGCAACGCTGA
Translation:
MAEAKVLSGAGLRGQVAGQTALSTVGQEGAGLTYRGYDVRDLAAAAIFEEVAYLLLYGELPNKQQLDAYLKK
LQGQRDLPQALKEVLERIPKDAHPMDVMRTGASVLGTLEPELSFDQQRDVADRLLAAFPAIMTYWYRFTHEG
QRIDCNSDEPTIGGHFLALLHGKKPSELHVKVMNVSLILYAEHEFNASTFTARVCASTLSDLYSCVTGAIGS
LRGPLHGGANEAAMELIERFSSPQEATAELLKMLERKDKIMGFGHAIYKDSDPRNEVIKGWSKQLADEVGDK
VLFAVSEAIDKTMWEQKKLFPNADFYHASAYHFMGIPTKLFTPIFVCSRTSGWTAHVFEQRANNRIIRPSAE
YTGVEQRAFVPLEQR*
AnnotationID:1684GeneID:1675
AnnotatorUID: danlee
Modification Date/Time: 2004-04-16 16:04:57
Gene Name:prpC
Confidence Code:2
GeneProduct:citrate synthase 2
Cell Localization:()
Synonyms:PA0795
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(5) Carbon compound catabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0372, pfam00285,
Secondary Functional Category(ies):Central intermediary metabolism 
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG0372, GltA, Citrate synthase. Score: 439, 4e-124
pfam00285, Citrate_synt, Citrate synthase. Score: 330, 4e-91






   
Genomic Context:






   
Comment:


















    ReferenceID:3353




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20500




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1675
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2955
                           PA0795_tr
                           translation of PA0795
                           375
                           99.99
                           99.99
                           0
                           1940.0
     

     
     
92424
                           gb|AAG04184.1|AE004514_7
                           (AE004514) citrate synthase 2 [Pseudomonas aeruginosa PAO1]
                           375
                           99.99
                           99.99
                           0
                           1940.0
     

     
     
92425
                           gb|AAN67948.1|AE016427_3
                           (AE016782) methylcitrate synthase, putative [Pseudomonas putida KT2440]
                           375
                           88.53
                           92.80
                           0
                           1737.0
     

     
     
92426
                           gb|AAO55802.1|
                           (AE016864) 2-methylcitrate synthase [Pseudomonas syringae pv. tomato str. DC3000]
                           375
                           85.60
                           90.66
                           0
                           1665.0
     

     
     
92427
                           gb|AAN53429.1|AE015482_3
                           (AE015482) methylcitrate synthase [Shewanella oneidensis MR-1]
                           375
                           72.53
                           82.40
                           0
                           1422.0
     

     






      

          
GC ORFID: 44677How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0795Glimmer Score: 

          
Start: 170633Stop: 169506

          
Length: 1128


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0795 translation of PA0795Homolog Bit Score 751.0

          
Other Homologs:  psyr_15may02_Scaffold1_revised_gene1063 (ORF: BLASTX 640.0), t_PA0795 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGCTGAAGCAAAAGTACTGAGTGGCGCCGGCCTGCGTGGCCAGGTGGCCGGCCAGACAGCCCTGTCCACC 
GTCGGCCAGGAAGGCGCCGGCCTGACCTACCGTGGCTACGACGTCCGCGACCTGGCGGCGGCGGCGATCTTC 
GAGGAAGTCGCCTACCTGCTGCTCTACGGCGAACTGCCGAACAAGCAACAGCTCGACGCCTACCTGAAGAAG 
CTCCAGGGCCAGCGCGACCTGCCGCAGGCGCTGAAGGAAGTTCTCGAACGGATTCCCAAGGACGCCCACCCG 
ATGGACGTGATGCGCACTGGCGCCTCGGTCCTCGGCACCCTGGAACCGGAGCTGAGCTTCGACCAGCAGCGC 
GACGTCGCCGACCGCCTGCTCGCCGCCTTCCCGGCGATCATGACCTACTGGTACCGCTTCACCCACGAAGGC 
CAGCGCATCGACTGCAACAGCGACGAGCCGACCATCGGCGGGCACTTCCTCGCCCTGCTCCACGGCAAGAAG 
CCCAGCGAGCTGCACGTGAAGGTGATGAACGTCTCGCTGATCCTCTACGCCGAGCATGAGTTCAACGCATCC 
ACCTTCACCGCGCGGGTTTGCGCCTCGACCCTGTCCGACCTGTACTCCTGCGTCACCGGCGCCATCGGCTCG 
CTGCGCGGCCCGCTGCACGGCGGCGCCAACGAGGCGGCGATGGAACTGATCGAACGCTTCTCTTCGCCGCAG 
GAAGCCACCGCCGAGCTGCTGAAGATGCTCGAGCGCAAGGACAAGATCATGGGCTTCGGGCATGCCATCTAC 
AAGGATTCCGACCCACGCAACGAAGTGATCAAGGGTTGGTCGAAGCAGCTCGCCGACGAGGTCGGCGACAAG 
GTCCTGTTCGCGGTTTCCGAGGCCATCGACAAGACCATGTGGGAGCAGAAGAAGCTGTTCCCCAACGCCGAC 
TTCTACCACGCCTCGGCGTATCACTTCATGGGCATCCCGACCAAGCTGTTCACGCCGATATTCGTCTGCTCG 
CGGACCAGCGGCTGGACCGCCCACGTCTTCGAACAGCGCGCCAACAACCGCATCATCCGCCCGAGCGCCGAG 
TACACCGGCGTCGAGCAGCGCGCGTTCGTGCCGCTGGAGCAACGCTGA