ViewGene
Locus Name:
GeneID:
Location:

GeneID:1674
TrivialName: PA14_43420
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_43420
PAO1 Ortholog Locus:PA1631
Sequence Length:1155
Protein Length:384
Start: 3868896
Stop: 3867742
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05020.1|AE004590_11 (AE004590) probable acyl-CoA dehydrogenase [Pseudomonas aeruginosa PAO1]
Identities = 383/384 (99%), Positives = 384/384 (100%)
Sequence:
ATGATTCGTGATCCGGAAACCCTGAACCTGCTGCTGGACAGCATCCGCCAGTTCGTCCGCGAAAGCCTGGTG
CCTCATGAGCAGGAGGTGGCGGAAACCGACCGCATCCCCGAGGCGATCATCGCCCGCATGCGCGAGATGGGC
CTGTTCGGCCTGTCGATCCCGGAGGCCTACGGCGGCCTCGGGGTGACCATGGAGGAAGAGGTGAGCATCGCC
TTCGAACTGGGGCGGACCTCGCCGGCGTTCCGTTCGCTGCTGGGCACCAACAATGGCATCGGCTCCCAGGGC
ATCGTCATCGACGGCACCGAAGAACAGAAGCGGCGCTACCTGCCGCGCCTGGCGTCGGGCGAACTGCTCAGT
TCGTTCTGCCTCACCGAACCGGACTCCGGTTCCGACGCCGCCTCGCTGAAGACCACGGCGGTGCGTGACGGC
CAGCACTACGTGCTCAACGGTACCAAGCGCTTCATCACCAACGCCCCGCAGGCCGGCATCTACACCGTGATG
GCACGCACCGACCCGGCGATCCGTGGCGCCGGCGGAATCTCCGCTTTCGTCGTCGAGCGCGGTACGCCCGGG
CTGTCCCTGGGCAAGCCGGATCGCAAGATGGGACAGAAGGGCGCGCATACCTGTGACGTGATCTTCGACGAC
TGCCGGGTGCCTGCCAGCCAGTTGATCGGCGGGGTCGAGGGCGTCGGCTTCAAGACCGCGATGAAGGTGCTC
GACAAGGGCCGCCTGCACATCGCCGCGGTCTGCGTGGGGGTCGCCGAGCGGATGCTCGAGGATGCGTTGCGC
TATGCTCTGGAACGCAAGCAGTTCGGCCAGCCGATCGCCGAGTTCCAGTTGATCCAGGCAATGCTCGCCGAC
AGCAAGGCCGAGGCCTACGCGGCGCGCTGCATGGTCATCGACGCCGCGCGGCAGCGCGACGAAGGCCGCGAT
GTCGGTACCGAGGCGTCCTGCGCCAAGCTGTTCGCCTCGGAAATGTGCGGCCGCGTCGCCGACCGCGCGGTG
CAGATCTTCGGCGGCGCCGGCTATATCGGCGACTATGGGATCGAGCGCTTCTATCGCGACGTGCGACTGTTC
CGCATCTACGAGGGCACCACGCAGATCCAGCAACTACTGATCGCCCGCAACATGATCCGCGCCGCCCAGGGC
TAG
Translation:
MIRDPETLNLLLDSIRQFVRESLVPHEQEVAETDRIPEAIIARMREMGLFGLSIPEAYGGLGVTMEEEVSIA
FELGRTSPAFRSLLGTNNGIGSQGIVIDGTEEQKRRYLPRLASGELLSSFCLTEPDSGSDAASLKTTAVRDG
QHYVLNGTKRFITNAPQAGIYTVMARTDPAIRGAGGISAFVVERGTPGLSLGKPDRKMGQKGAHTCDVIFDD
CRVPASQLIGGVEGVGFKTAMKVLDKGRLHIAAVCVGVAERMLEDALRYALERKQFGQPIAEFQLIQAMLAD
SKAEAYAARCMVIDAARQRDEGRDVGTEASCAKLFASEMCGRVADRAVQIFGGAGYIGDYGIERFYRDVRLF
RIYEGTTQIQQLLIARNMIRAAQG*
AnnotationID:1683GeneID:1674
AnnotatorUID: diggins
Modification Date/Time: 2005-02-27 15:03:10
Gene Name:
Confidence Code:3
GeneProduct:putative acyl-CoA dehydrogenase
Cell Localization:()
Synonyms:PA1631
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(13) Fatty acid and phospholipid metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:cd01158,cd00567,cd01161,cd01162
Secondary Functional Category(ies):putative enzyme
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAG10019.1|AF282240_3 (AF282240) acyl-CoA dehydrogenase [Acinetobacter sp. SE19]
          Length = 384

 Score =  600 bits (1546), Expect = e-171
 Identities = 293/382 (76%), Positives = 340/382 (89%)

>gb|AAN33424.1|AE014523_10 (AE014523) acyl-CoA dehydrogenase [Brucella suis 1330]
          Length = 384

 Score =  597 bits (1540), Expect = e-170
 Identities = 297/383 (77%), Positives = 340/383 (88%)

>emb|CAE31111.1| (BX640438) acyl-CoA dehydrogenase [Bordetella bronchiseptica]
          Length = 382

 Score =  567 bits (1460), Expect = e-161
 Identities = 282/380 (74%), Positives = 330/380 (86%)








 
Structural Features:
cd01158, SCAD/SBCAD, Short chain acyl-CoA dehydrogenase (SCAD).
CD-Length = 373 residues, 100.0% aligned
Score =  406 bits (1046), Expect = 2e-114

cd00567, ACAD, Acyl-CoA dehydrogenase (ACAD). 
CD-Length = 369 residues, 100.0% aligned
Score =  372 bits (956), Expect = 4e-104

cd01161, VLCAD, Very long chain acyl-CoA dehydrogenase (VLCAD).
CD-Length = 409 residues,  92.9% aligned
Score =  340 bits (874), Expect = 1e-94

cd01162, IBD, Isobutyryl-CoA dehydrogenase (IBD) catalyzes the alpha, 
beta- dehydrogenation of short branched chain acyl-CoA intermediates 
in valine catabolism.
CD-Length = 375 residues,  99.2% aligned
Score =  317 bits (813), Expect = 1e-87






   
Genomic Context:






   
Comment:


















    ReferenceID:3351




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20498




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37227




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1674_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1674
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2952
                           PA1631_tr
                           translation of PA1631
                           384
                           99.73
                           99.99
                           0
                           1942.0
     

     
     
92318
                           gb|AAG05020.1|AE004590_11
                           (AE004590) probable acyl-CoA dehydrogenase [Pseudomonas aeruginosa PAO1]
                           384
                           99.73
                           99.99
                           0
                           1942.0
     

     
     
92322
                           gb|AAN33424.1|AE014523_10
                           (AE014523) acyl-CoA dehydrogenase [Brucella suis 1330]
                           384
                           77.34
                           88.54
                           0
                           1538.0
     

     
     
92319
                           gb|AAL09094.1|
                           (L05770) DcaA [Acinetobacter sp. ADP1]
                           384
                           76.30
                           88.54
                           0
                           1555.0
     

     
     
92320
                           gb|AAG10019.1|AF282240_3
                           (AF282240) acyl-CoA dehydrogenase [Acinetobacter sp. SE19]
                           384
                           76.30
                           88.54
                           0
                           1543.0
     

     






      

          
GC ORFID: 44676How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1631Glimmer Score: 

          
Start: 1085013Stop: 1086167

          
Length: 1155


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA1631 translation of PA1631Homolog Bit Score 752.0

          
Other Homologs:  psyr_15may02_Scaffold1_revised_gene624 (ORF: BLASTX 281.0), t_PA2552 (ORF: BLASTX 280.0), t_PA0746 (ORF: BLASTX 249.0), t_PA1631 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGATTCGTGATCCGGAAACCCTGAACCTGCTGCTGGACAGCATCCGCCAGTTCGTCCGCGAAAGCCTGGTG 
CCTCATGAGCAGGAGGTGGCGGAAACCGACCGCATCCCCGAGGCGATCATCGCCCGCATGCGCGAGATGGGC 
CTGTTCGGCCTGTCGATCCCGGAGGCCTACGGCGGCCTCGGGGTGACCATGGAGGAAGAGGTGAGCATCGCC 
TTCGAACTGGGGCGGACCTCGCCGGCGTTCCGTTCGCTGCTGGGCACCAACAATGGCATCGGCTCCCAGGGC 
ATCGTCATCGACGGCACCGAAGAACAGAAGCGGCGCTACCTGCCGCGCCTGGCGTCGGGCGAACTGCTCAGT 
TCGTTCTGCCTCACCGAACCGGACTCCGGTTCCGACGCCGCCTCGCTGAAGACCACGGCGGTGCGTGACGGC 
CAGCACTACGTGCTCAACGGTACCAAGCGCTTCATCACCAACGCCCCGCAGGCCGGCATCTACACCGTGATG 
GCACGCACCGACCCGGCGATCCGTGGCGCCGGCGGAATCTCCGCTTTCGTCGTCGAGCGCGGTACGCCCGGG 
CTGTCCCTGGGCAAGCCGGATCGCAAGATGGGACAGAAGGGCGCGCATACCTGTGACGTGATCTTCGACGAC 
TGCCGGGTGCCTGCCAGCCAGTTGATCGGCGGGGTCGAGGGCGTCGGCTTCAAGACCGCGATGAAGGTGCTC 
GACAAGGGCCGCCTGCACATCGCCGCGGTCTGCGTGGGGGTCGCCGAGCGGATGCTCGAGGATGCGTTGCGC 
TATGCTCTGGAACGCAAGCAGTTCGGCCAGCCGATCGCCGAGTTCCAGTTGATCCAGGCAATGCTCGCCGAC 
AGCAAGGCCGAGGCCTACGCGGCGCGCTGCATGGTCATCGACGCCGCGCGGCAGCGCGACGAAGGCCGCGAT 
GTCGGTACCGAGGCGTCCTGCGCCAAGCTGTTCGCCTCGGAAATGTGCGGCCGCGTCGCCGACCGCGCGGTG 
CAGATCTTCGGCGGCGCCGGCTATATCGGCGACTATGGGATCGAGCGCTTCTATCGCGACGTGCGACTGTTC 
CGCATCTACGAGGGCACCACGCAGATCCAGCAACTACTGATCGCCCGCAACATGATCCGCGCCGCCCAGGGC 
TAG