ViewGene

Locus Name:
GeneID:
Location:

GeneID:1672
TrivialName: PA14_70120
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_70120
PAO1 Ortholog Locus:PA5311
Sequence Length:1164
Protein Length:387
Start: 6255197
Stop: 6254034
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08696.1|AE004943_12 (AE004943) probable MFS transporter [Pseudomonas aeruginosa PAO1]
Identities = 384/387 (99%), Positives = 386/387 (99%)
Sequence:
ATGCGTTGGGGAAGCTATTTCGCCGTCTGTTCCGCAGTCATCAGCATCGGCCTCGCCCTTGGCCTGACCATG
CCGCTGGTCTCGTTGCGCCTGGAGAGCTGGGGCTACGGCAGTTTCGCCATCGGCGTGATGGCCAGCACGCCG
GCAGTGGGCGTGCTGCTCGGCGCGATGATCGCCGGGCGCCTCGCCGCGCGCGTCGGTACGCCGCGGCTGATG
CAGTTGTGCCTGCTCACCGGGGCAGCCTCCATCGGCCTGCTGGCACTGCTGCAGAGCTACCCGGTATGGCTG
TTGCTGCGCCTTCTGATCGGCGTGCAGCTCACCGTGGTGTTCATCCTCGGGGAAAGCTGGATCAACCAGTTG
GCGGTGGAGAAGTGGCGTGGCCGGCTGGTCGCGCTGTACGGCACCGGCTACGCCCTCAGCCAACTGTCCGGG
CCGGTACTGCTGACCTTCATCGGTACCGCCGACGACCGTGGCTTCTGGTTCGGCGTCTGCCTGCTGATTGCT
GGCTCGTTGCTGCTGCTGGGCCGCGGCGGTGCGCCCAGGGTCGATCCGCACAGCGCCTCCGGGCGCGGTTTG
TGGGCCTTCTGCCGGGGCCTGCCGGCGATCGCCTGGGCGGTGGTGTTGTTCGCTGCCTTCGAGGCGATGATC
CTCACCCTGCTGCCGGTATACGGGTTGCGCCAGGGCTTTCCGCAAGCGGTGGCGCTGGCCATGGTCAGTACC
GTGGTGGTGGGCGATGCATTGTTGCAGCTGCCGATCGGCTGGCTCGCCGACCGGGTCTCGCGCAGCGGCCTG
TTCGGCGGCTGCGGCCTGGTGCTGCTGCTGAGCAGCCTGGCGATTCCCCTGCTGCTGCAGACGCCGTTGATC
TGGCCGCTGCTGGTGCTGTTCGGGGCCAGCGCCGGCGGGTTGTTCACCCTGGCGCTGATCCTGATCGGCGAG
CGCTACCGAGACGATGCCCTGGTCCGGGCCAATGCCCATGTCGCGCAGCTATGGGGCATCGGCTGCCTGCTC
GGCCCGCTGGCCACCGGCGCCGCCAGCCAGTGGATCAGCGGTCACGCCCTGCCGTTGATGATGGCGCTCGGC
GCGGCGGGCTTCGTGGTGCTGGTGCGGCTGCGCGGGGCGATTCCGGCGGACGAGGAGGCGACCGGCCTGGAA
GCCTCCGAGTGA
Translation:
MRWGSYFAVCSAVISIGLALGLTMPLVSLRLESWGYGSFAIGVMASTPAVGVLLGAMIAGRLAARVGTPRLM
QLCLLTGAASIGLLALLQSYPVWLLLRLLIGVQLTVVFILGESWINQLAVEKWRGRLVALYGTGYALSQLSG
PVLLTFIGTADDRGFWFGVCLLIAGSLLLLGRGGAPRVDPHSASGRGLWAFCRGLPAIAWAVVLFAAFEAMI
LTLLPVYGLRQGFPQAVALAMVSTVVVGDALLQLPIGWLADRVSRSGLFGGCGLVLLLSSLAIPLLLQTPLI
WPLLVLFGASAGGLFTLALILIGERYRDDALVRANAHVAQLWGIGCLLGPLATGAASQWISGHALPLMMALG
AAGFVVLVRLRGAIPADEEATGLEASE*
AnnotationID:1681GeneID:1672
AnnotatorUID: diggins
Modification Date/Time: 2005-03-16 13:01:31
Gene Name:
Confidence Code:3
GeneProduct:putative MFS transporter
Cell Localization:()
Synonyms:PA5311
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2807,COG2814
Secondary Functional Category(ies):membrane proteins
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAN70842.1|AE016728_11 (AE016793) major facilitator family transporter [Pseudomonas putida
           KT2440]
          Length = 379

 Score =  539 bits (1388), Expect = e-152
 Identities = 273/373 (73%), Positives = 312/373 (83%)

>gb|AAO53648.1| (AE016856) membrane protein, putative [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 382

 Score =  514 bits (1325), Expect = e-145
 Identities = 257/380 (67%), Positives = 302/380 (79%)

Structural Features:
COG2807, CynX, Cyanate permease [Inorganic ion transport and metabolism]
CD-Length = 395 residues,  89.4% aligned
Score = 63.7 bits (155), Expect = 3e-11
Identities = 101/362 (27%), Positives = 147/362 (40%), Gaps = 22/362 (6%)

COG2814, AraJ, Arabinose efflux permease 
[Carbohydrate transport and metabolism]
CD-Length = 394 residues,  96.7% aligned
Score = 55.2 bits (133), Expect = 1e-08
Identities = 90/382 (23%), Positives = 139/382 (36%), Gaps = 7/382 (1%)
Genomic Context:
Comment:
ReferenceID:3347
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:20494
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:34768
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:1672_cdd.html
URL:
Homologs By Global Alignment
Gene ID:1672

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
2949 PA5311_tr translation of PA5311 387 99.22 99.74 0 1947.0
92291 gb|AAG08696.1|AE004943_12 (AE004943) probable MFS transporter [Pseudomonas aeruginosa PAO1] 387 99.22 99.74 0 1947.0
92292 gb|AAN70842.1|AE016728_11 (AE016793) major facilitator family transporter [Pseudomonas putida KT2440] 388 70.61 80.67 10 1384.0
92293 gb|AAO53648.1| (AE016856) membrane protein, putative [Pseudomonas syringae pv. tomato str. DC3000] 387 66.40 78.03 5 1324.0
92294 gb|AAN66327.1|AE016261_4 (AE016776) major facilitator family transporter [Pseudomonas putida KT2440] 403 40.44 55.83 34 675.0
GC ORFID: 44674How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA5311Glimmer Score:
Start: 5518886Stop: 5517723
Length: 1164
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA5311 translation of PA5311Homolog Bit Score 754.0
Other Homologs: psyr_15may02_Scaffold2_revised_gene3153 (ORF: BLASTX 517.0), t_PA5311 (ORF: GLIMMER)
GC ORF Sequence
ATGCGTTGGGGAAGCTATTTCGCCGTCTGTTCCGCAGTCATCAGCATCGGCCTCGCCCTTGGCCTGACCATG
CCGCTGGTCTCGTTGCGCCTGGAGAGCTGGGGCTACGGCAGTTTCGCCATCGGCGTGATGGCCAGCACGCCG
GCAGTGGGCGTGCTGCTCGGCGCGATGATCGCCGGGCGCCTCGCCGCGCGCGTCGGTACGCCGCGGCTGATG
CAGTTGTGCCTGCTCACCGGGGCAGCCTCCATCGGCCTGCTGGCACTGCTGCAGAGCTACCCGGTATGGCTG
TTGCTGCGCCTTCTGATCGGCGTGCAGCTCACCGTGGTGTTCATCCTCGGGGAAAGCTGGATCAACCAGTTG
GCGGTGGAGAAGTGGCGTGGCCGGCTGGTCGCGCTGTACGGCACCGGCTACGCCCTCAGCCAACTGTCCGGG
CCGGTACTGCTGACCTTCATCGGTACCGCCGACGACCGTGGCTTCTGGTTCGGCGTCTGCCTGCTGATTGCT
GGCTCGTTGCTGCTGCTGGGCCGCGGCGGTGCGCCCAGGGTCGATCCGCACAGCGCCTCCGGGCGCGGTTTG
TGGGCCTTCTGCCGGGGCCTGCCGGCGATCGCCTGGGCGGTGGTGTTGTTCGCTGCCTTCGAGGCGATGATC
CTCACCCTGCTGCCGGTATACGGGTTGCGCCAGGGCTTTCCGCAAGCGGTGGCGCTGGCCATGGTCAGTACC
GTGGTGGTGGGCGATGCATTGTTGCAGCTGCCGATCGGCTGGCTCGCCGACCGGGTCTCGCGCAGCGGCCTG
TTCGGCGGCTGCGGCCTGGTGCTGCTGCTGAGCAGCCTGGCGATTCCCCTGCTGCTGCAGACGCCGTTGATC
TGGCCGCTGCTGGTGCTGTTCGGGGCCAGCGCCGGCGGGTTGTTCACCCTGGCGCTGATCCTGATCGGCGAG
CGCTACCGAGACGATGCCCTGGTCCGGGCCAATGCCCATGTCGCGCAGCTATGGGGCATCGGCTGCCTGCTC
GGCCCGCTGGCCACCGGCGCCGCCAGCCAGTGGATCAGCGGTCACGCCCTGCCGTTGATGATGGCGCTCGGC
GCGGCGGGCTTCGTGGTGCTGGTGCGGCTGCGCGGGGCGATTCCGGCGGACGAGGAGGCGACCGGCCTGGAA
GCCTCCGAGTGA