ViewGene
Locus Name:
GeneID:
Location:

GeneID:1671
TrivialName: PA14_23010
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_23010
PAO1 Ortholog Locus:PA3187
Sequence Length:1161
Protein Length:386
Start: 1995472
Stop: 1996632
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06575.1|AE004742_11 (AE004742) probable ATP-binding component of ABC transporter [Pseudomonas aeruginosa PAO1]
Identities = 386/386 (100%), Positives = 386/386 (100%)
Sequence:
ATGGCAACCCTCGAACTGCGCAACCTGCACAAGAGCTACGGCAGCGGCCTGGCCGATACCCTCAGGGACATC
CGGCTGAAGATCGACTCCGGCGAATTCCTGATCCTCGTCGGCCCCTCGGGCTGCGGCAAGTCGACCCTGATG
AACTGCATCGCCGGGCTGGAGAGCATCACCGGCGGTGCGATCCTGGTGGACGGCCAGGACATCAGCGGCATG
AGCCCCAAGGACCGCGACATCGCCATGGTCTTCCAGTCCTACGCCCTGTACCCGACCATGAGCGTGCGCGAG
AACATCGCCTTCGGTCTGAAGATCCGCAAGATGCCCCAGGCCGCCATCGACGAGGAGGTGGCGCGGGTGGCC
AGGCTGTTGCAGATCGAGCACCTGCTCGAACGCAAGCCCTCGCAGCTCTCCGGCGGCCAGCAGCAGCGGGTG
GCCATGGGCCGGGCGCTGGCGCGGCGGCCCAAGGTCTACCTGTTCGACGAGCCGCTGTCCAACCTCGATGCC
AAGCTGCGGGTGGAAATGCGCACCGAGCTGAAGCTGATGCACCAGCGGCTGAAGACCACGACCGTGTATGTC
ACCCACGACCAGATCGAGGCCATGACCCTCGGCGACAAGGTGGCGGTGATGAAGGACGGCGTCATCCAGCAG
TTCGGCACGCCGCAGCAGATCTACAACGACCCGGCCAACCTGTTCGTCGCCAGCTTCATCGGTTCGCCGCCG
ATGAATTTCATTCCGTTGCGCCTGCAGCGCCGGGACGGACGCTGGACCGGCCTGCTCGATAGCGGCCAGGAC
CGTATCGAACTGCCGCTGAGCCTGGAGCCCGGCCTGGAGGAGGGGCGCGAGCTGATCCTCGGCGTACGACCG
GAGCAGATCGCCCTGGGCGATGGCAGCGCTGCCCATGACCTGCGTACCGAGGTCGAGGTGCTCGAACCGACC
GGGCCGGACACCCTGGTCTTCGTCACCGTCAACCAGGTCAAGGTCTGTTGCCGCCTGGCGCCGGACGTCGCG
CCGGCCGCGGGCAGCGGCATGAGCCTGCGCTTCGATCCCGCGCGGGTCCTGCTGTTCGACGCGCAGAGCGGC
GAGCGCGTGGCCGTGCGCACGGCGGGCGTGGCGGCGGAGAAGGTCACCGCCTTGAACGGCAATCGCCAGAAG
AACTCCTGA
Translation:
MATLELRNLHKSYGSGLADTLRDIRLKIDSGEFLILVGPSGCGKSTLMNCIAGLESITGGAILVDGQDISGM
SPKDRDIAMVFQSYALYPTMSVRENIAFGLKIRKMPQAAIDEEVARVARLLQIEHLLERKPSQLSGGQQQRV
AMGRALARRPKVYLFDEPLSNLDAKLRVEMRTELKLMHQRLKTTTVYVTHDQIEAMTLGDKVAVMKDGVIQQ
FGTPQQIYNDPANLFVASFIGSPPMNFIPLRLQRRDGRWTGLLDSGQDRIELPLSLEPGLEEGRELILGVRP
EQIALGDGSAAHDLRTEVEVLEPTGPDTLVFVTVNQVKVCCRLAPDVAPAAGSGMSLRFDPARVLLFDAQSG
ERVAVRTAGVAAEKVTALNGNRQKNS*
AnnotationID:1680GeneID:1671
AnnotatorUID: diggins
Modification Date/Time: 2005-04-14 06:06:09
Gene Name:gltK
Confidence Code:1
GeneProduct:putative ATP-binding component of ABC transporter
Cell Localization:()
Synonyms:ugpC
Cell Localization Confidence Code:5
MolecularFunction:ATP-binding component of sn-glycerol 3-phosphate transport system
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG3839,COG3842,COG1118
Secondary Functional Category(ies):carbohydrate transport and metabolism
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN66643.1|AE016292_3 (AE016777) sugar ABC transporter, ATP-binding subunit [Pseudomonas
           putida KT2440]
          Length = 384

 Score =  597 bits (1538), Expect = e-170
 Identities = 303/375 (80%), Positives = 332/375 (88%), Gaps = 2/375 (0%)

>gb|AAO08575.1|AE016797_30 (AE016797) ABC-type sugar transport system, ATPase component
           [Vibrio vulnificus CMCP6]
          Length = 371

 Score =  440 bits (1131), Expect = e-123
 Identities = 225/370 (60%), Positives = 285/370 (77%), Gaps = 9/370 (2%)

>emb|CAC49120.1| (AL603644) putative sugar uptake ABC transporter ATP-binding
           protein [Sinorhizobium meliloti]
          Length = 360

 Score =  369 bits (948), Expect = e-101
 Identities = 190/360 (52%), Positives = 251/360 (69%), Gaps = 6/360 (1%)






 
Structural Features:
COG3839, MalK, ABC-type sugar transport systems, ATPase components 
[Carbohydrate transport and metabolism]
CD-Length = 338 residues, 100.0% aligned
Score =  427 bits (1098), Expect = 2e-120
Identities = 192/358 (53%), Positives = 254/358 (70%), Gaps = 20/358 (5%)

COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components 
[Amino acid transport and metabolism]
CD-Length = 352 residues,  99.4% aligned
Score =  345 bits (885), Expect = 8e-96
Identities = 157/360 (43%), Positives = 207/360 (57%), Gaps = 13/360 (3%)

cd00267, ABC_ATPase, ABC (ATP-binding cassette) transporter nucleotide-binding domain
CD-Length = 217 residues, 100.0% aligned
Score =  219 bits (559), Expect = 5e-58
Identities = 95/220 (43%), Positives = 136/220 (61%), Gaps = 6/220 (2%)






   
Genomic Context:






   
Comment:


















    ReferenceID:3345




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20492




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32356




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1671_cdd.html


    		




 
URL:

















    ReferenceID:33972




  
Author/Investigator(s):
        Adewoye LO, Worobec EA.





  
Title:
        Identification and characterization of the gltK gene encoding a membrane-associated glucose transport protein of pseudomonas aeruginosa.




  
PubMed:
        10940570


MedLine:
        




    
Source:
Gene. 2000 Aug 8;253(2):323-30.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=10940570

















    ReferenceID:33973




  
Author/Investigator(s):
        





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1671
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2940
                           PA3187_tr
                           translation of PA3187
                           386
                           99.99
                           99.99
                           0
                           1946.0
     

     
     
91582
                           gb|AAG06575.1|AE004742_11
                           (AE004742) probable ATP-binding component of ABC transporter [Pseudomonas aeruginosa PAO1]
                           386
                           99.99
                           99.99
                           0
                           1946.0
     

     
     
91583
                           gb|AAN66643.1|AE016292_3
                           (AE016777) sugar ABC transporter, ATP-binding subunit [Pseudomonas putida KT2440]
                           389
                           78.40
                           85.86
                           8
                           1539.0
     

     
     
91584
                           gb|AAO54819.1|
                           (AE016860) glucose ABC transporter, ATP-binding protein [Pseudomonas syringae pv. tomato str. DC3000]
                           389
                           77.12
                           88.17
                           6
                           1532.0
     

     
     
91585
                           gb|AAD32695.1|AF143949_1
                           (AF143949) glucose ABC transporter ATPase [Pseudomonas aeruginosa]
                           386
                           65.28
                           65.80
                           117
                           1232.0
     

     






      

          
GC ORFID: 44673How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3187Glimmer Score: 

          
Start: 2958459Stop: 2957299

          
Length: 1161


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3187 translation of PA3187Homolog Bit Score 754.0

          
Other Homologs:  psyr_15may02_Scaffold3_revised_gene4421 (ORF: BLASTX 587.0), psyr_15may02_Scaffold3_revised_gene4722 (ORF: BLASTX 315.0), psyr_15may02_Scaffold2_revised_gene3068 (ORF: BLASTX 308.0), t_PA2341 (ORF: BLASTX 307.0), psyr_15may02_Scaffold4_revised_gene5887 (ORF: BLASTX 268.0), psyr_15may02_Scaffold13_revised_gene2134 (ORF: BLASTX 234.0), t_PA0603 (ORF: BLASTX 229.0), t_PA0302 (ORF: BLASTX 217.0), t_PA3187 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGCAACCCTCGAACTGCGCAACCTGCACAAGAGCTACGGCAGCGGCCTGGCCGATACCCTCAGGGACATC 
CGGCTGAAGATCGACTCCGGCGAATTCCTGATCCTCGTCGGCCCCTCGGGCTGCGGCAAGTCGACCCTGATG 
AACTGCATCGCCGGGCTGGAGAGCATCACCGGCGGTGCGATCCTGGTGGACGGCCAGGACATCAGCGGCATG 
AGCCCCAAGGACCGCGACATCGCCATGGTCTTCCAGTCCTACGCCCTGTACCCGACCATGAGCGTGCGCGAG 
AACATCGCCTTCGGTCTGAAGATCCGCAAGATGCCCCAGGCCGCCATCGACGAGGAGGTGGCGCGGGTGGCC 
AGGCTGTTGCAGATCGAGCACCTGCTCGAACGCAAGCCCTCGCAGCTCTCCGGCGGCCAGCAGCAGCGGGTG 
GCCATGGGCCGGGCGCTGGCGCGGCGGCCCAAGGTCTACCTGTTCGACGAGCCGCTGTCCAACCTCGATGCC 
AAGCTGCGGGTGGAAATGCGCACCGAGCTGAAGCTGATGCACCAGCGGCTGAAGACCACGACCGTGTATGTC 
ACCCACGACCAGATCGAGGCCATGACCCTCGGCGACAAGGTGGCGGTGATGAAGGACGGCGTCATCCAGCAG 
TTCGGCACGCCGCAGCAGATCTACAACGACCCGGCCAACCTGTTCGTCGCCAGCTTCATCGGTTCGCCGCCG 
ATGAATTTCATTCCGTTGCGCCTGCAGCGCCGGGACGGACGCTGGACCGGCCTGCTCGATAGCGGCCAGGAC 
CGTATCGAACTGCCGCTGAGCCTGGAGCCCGGCCTGGAGGAGGGGCGCGAGCTGATCCTCGGCGTACGACCG 
GAGCAGATCGCCCTGGGCGATGGCAGCGCTGCCCATGACCTGCGTACCGAGGTCGAGGTGCTCGAACCGACC 
GGGCCGGACACCCTGGTCTTCGTCACCGTCAACCAGGTCAAGGTCTGTTGCCGCCTGGCGCCGGACGTCGCG 
CCGGCCGCGGGCAGCGGCATGAGCCTGCGCTTCGATCCCGCGCGGGTCCTGCTGTTCGACGCGCAGAGCGGC 
GAGCGCGTGGCCGTGCGCACGGCGGGCGTGGCGGCGGAGAAGGTCACCGCCTTGAACGGCAATCGCCAGAAG 
AACTCCTGA