ViewGene
Locus Name:
GeneID:
Location:

GeneID:1670
TrivialName: PA14_34700
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_34700
PAO1 Ortholog Locus:PA2315
Sequence Length:1176
Protein Length:391
Start: 3081983
Stop: 3083158
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05703.1|AE004657_10 (AE004657) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 380/391 (97%), Positives = 383/391 (97%)
Sequence:
ATGTCAGGTTTCGAACGAGGGCCAGGGCGCAGCCTGGCGGAACATGTCGATCaggcGATCGAGGCGGCATTC
GCCGACCAGCGCCTGGTGGGAGCGGTGGTACTGGTGGCGCACCGGGGGCAGTGGCTCTATCGACGGGCTGCC
GGCCtgGCCGACCGCGAGGCCGGCCGGACAATGGGCGAGGACAGCCTGTTCCGCCTGGCCTCGGTGAGCAAG
CCGATCGTCAGCGTCGCCGCCCTGAGCCTGGTGGACGAGGGCCGGCTGGCCCTCGACGAGCCGATCGCCGAC
TGGTTGCCGGCGTTCCGTCCGCGCCTGGCCGACGGCCGCGAGGCGCGCATCACGCCGCGGCAGTTGCTGAGT
CACAGCGCCGGCCTCGGTTATCGCTTCCTCGAAGCCGACGCAGACGGCCCCTATGCCCGCGCCGGGATTTCC
GACGGCATGGACCTGCCGGGTTTCGACCTGGCCGAGAACCTCCGTCGCCTGGCCTCCGTGCCCTTGCTCTAC
GAGCCCGGCCGCGCCTGGGGCTATTCGCTGGCCACCGACGTGCTCGGCGCGCTGGTGGCGCGGGTCGACGGG
CGGCCGCTGGCGGAAGCGCTGCGGCAGCGGGTCGGGATTCCGGCCGGCATGCGCGACAGCGGCTTCCTCTGC
GCCGACGCGCAACGCCTGGCGGCGGTCTACGTCAGCGACCGGCCACGCCCGCGGCGGATGGCCGAGCGGGAG
ACCGTCACGCCGTTCGAGGACTGCGTCGGCATTCGCTTCGAGCCGCGTCGGGCCTTCGAACCGTCTGCCTAT
GCGTCCGGCGGGGCGGGGATGATCGGCAGCGCCGGCGACGTGCTGCGCCTTTTGGAAATCCTTCGCCAGGGC
GGCGCGCCGTTGTTGACGCCTGGCCTGGTGGAGGAGATGGGCCGCGACCAGGTACCCGGCCTGGAACTGCGG
GCCAATCCCGGTTTCGGCTTCGGCCTGGGCTTCTCCGTGCTGCGCGACCCGGCCATCGCGCAATCGCCGGAG
TCTCCCGGCACCTGGCGCTGGGGCGGCGCCTACGGGCATTCCTGGTTCGTCGACCGGGCCCGCGAACTGTCG
GTGGTGGCGCTCACCAACACCCTGTTCGAGGGCATGTCAGGACGCTTCGTCAACGACCTGCGCGACGCCGTC
TACCGTTCCGCGGAGGTGCGCTGA
Translation:
MSGFERGPGRSLAEHVDQAIEAAFADQRLVGAVVLVAHRGQWLYRRAAGLADREAGRTMGEDSLFRLASVSK
PIVSVAALSLVDEGRLALDEPIADWLPAFRPRLADGREARITPRQLLSHSAGLGYRFLEADADGPYARAGIS
DGMDLPGFDLAENLRRLASVPLLYEPGRAWGYSLATDVLGALVARVDGRPLAEALRQRVGIPAGMRDSGFLC
ADAQRLAAVYVSDRPRPRRMAERETVTPFEDCVGIRFEPRRAFEPSAYASGGAGMIGSAGDVLRLLEILRQG
GAPLLTPGLVEEMGRDQVPGLELRANPGFGFGLGFSVLRDPAIAQSPESPGTWRWGGAYGHSWFVDRARELS
VVALTNTLFEGMSGRFVNDLRDAVYRSAEVR*
AnnotationID:1679GeneID:1670
AnnotatorUID: diggins
Modification Date/Time: 2005-03-04 13:01:38
Gene Name:
Confidence Code:3
GeneProduct:putative beta lactamase
Cell Localization:()
Synonyms:PA2315
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(1) Adaptation, protection
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam00144,COG1680
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>emb|CAA43847.1| (X61673) triacylglycerol lipase [Pseudomonas sp. 109]
          Length = 333

 Score =  637 bits (1643), Expect = 0.0

>gb|AAF59826.1| (U33634) esterase EstB [Burkholderia gladioli]
          Length = 392

 Score =  377 bits (967), Expect = e-104
 Identities = 212/377 (56%), Positives = 247/377 (65%), Gaps = 5/377 (1%)






 
Structural Features:
pfam00144, Beta-lactamase, Beta-lactamase.
CD-Length = 324 residues,  99.7% aligned
Score =  171 bits (434), Expect = 1e-43
Identities = 91/370 (24%), Positives = 137/370 (37%), Gaps = 48/370 (12%)
 
COG1680, AmpC, Beta-lactamase class C and other penicillin binding proteins 
[Defense mechanisms]
CD-Length = 390 residues,  90.8% aligned
Score =  149 bits (377), Expect = 5e-37
Identities = 102/388 (26%), Positives = 155/388 (39%), Gaps = 37/388 (9%)






   
Genomic Context:






   
Comment:


















    ReferenceID:3343




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20490




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32478




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1670_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1670
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2939
                           PA2315_tr
                           translation of PA2315
                           391
                           97.18
                           97.95
                           0
                           1948.0
     

     
     
91577
                           gb|AAG05703.1|AE004657_10
                           (AE004657) hypothetical protein PA2315 [Pseudomonas aeruginosa PAO1]
                           391
                           97.18
                           97.95
                           0
                           1948.0
     

     
     
91578
                           emb|CAA43847.1|
                           (X61673) triacylglycerol lipase [Pseudomonas sp. 109]
                           391
                           82.09
                           82.60
                           58
                           1643.0
     

     
     
91579
                           gb|AAF59826.1|
                           (U33634) esterase EstB [Burkholderia gladioli]
                           404
                           53.21
                           62.12
                           25
                           970.0
     

     
     
91580
                           gb|AAO56448.1|
                           (AE016866) esterase [Pseudomonas syringae pv. tomato str. DC3000]
                           401
                           42.89
                           56.35
                           27
                           761.0
     

     






      

          
GC ORFID: 44672How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2315Glimmer Score: 

          
Start: 1871933Stop: 1870758

          
Length: 1176


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2315 translation of PA2315Homolog Bit Score 754.0

          
Other Homologs:  psyr_15may02_Scaffold1_revised_gene1311 (ORF: BLASTX 288.0), t_PA2315 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTCAGGTTTCGAACGAGGGCCAGGGCGCAGCCTGGCGGAACATGTCGATCaggcGATCGAGGCGGCATTC 
GCCGACCAGCGCCTGGTGGGAGCGGTGGTACTGGTGGCGCACCGGGGGCAGTGGCTCTATCGACGGGCTGCC 
GGCCtgGCCGACCGCGAGGCCGGCCGGACAATGGGCGAGGACAGCCTGTTCCGCCTGGCCTCGGTGAGCAAG 
CCGATCGTCAGCGTCGCCGCCCTGAGCCTGGTGGACGAGGGCCGGCTGGCCCTCGACGAGCCGATCGCCGAC 
TGGTTGCCGGCGTTCCGTCCGCGCCTGGCCGACGGCCGCGAGGCGCGCATCACGCCGCGGCAGTTGCTGAGT 
CACAGCGCCGGCCTCGGTTATCGCTTCCTCGAAGCCGACGCAGACGGCCCCTATGCCCGCGCCGGGATTTCC 
GACGGCATGGACCTGCCGGGTTTCGACCTGGCCGAGAACCTCCGTCGCCTGGCCTCCGTGCCCTTGCTCTAC 
GAGCCCGGCCGCGCCTGGGGCTATTCGCTGGCCACCGACGTGCTCGGCGCGCTGGTGGCGCGGGTCGACGGG 
CGGCCGCTGGCGGAAGCGCTGCGGCAGCGGGTCGGGATTCCGGCCGGCATGCGCGACAGCGGCTTCCTCTGC 
GCCGACGCGCAACGCCTGGCGGCGGTCTACGTCAGCGACCGGCCACGCCCGCGGCGGATGGCCGAGCGGGAG 
ACCGTCACGCCGTTCGAGGACTGCGTCGGCATTCGCTTCGAGCCGCGTCGGGCCTTCGAACCGTCTGCCTAT 
GCGTCCGGCGGGGCGGGGATGATCGGCAGCGCCGGCGACGTGCTGCGCCTTTTGGAAATCCTTCGCCAGGGC 
GGCGCGCCGTTGTTGACGCCTGGCCTGGTGGAGGAGATGGGCCGCGACCAGGTACCCGGCCTGGAACTGCGG 
GCCAATCCCGGTTTCGGCTTCGGCCTGGGCTTCTCCGTGCTGCGCGACCCGGCCATCGCGCAATCGCCGGAG 
TCTCCCGGCACCTGGCGCTGGGGCGGCGCCTACGGGCATTCCTGGTTCGTCGACCGGGCCCGCGAACTGTCG 
GTGGTGGCGCTCACCAACACCCTGTTCGAGGGCATGTCAGGACGCTTCGTCAACGACCTGCGCGACGCCGTC 
TACCGTTCCGCGGAGGTGCGCTGA