ViewGene
Locus Name:
GeneID:
Location:

GeneID:167
TrivialName: PA14_15790
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_15790
PAO1 Ortholog Locus:PA3760
Sequence Length:2529
Protein Length:842
Start: 1347709
Stop: 1345181
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07147.1|AE004794_12 (AE004794) probable phosphotransferase protein [Pseudomonas aeruginosa PAO1]
Identities = 838/842 (99%), Positives = 839/842 (99%)
Sequence:
ATGAACAACAAGAATCTCGCCCTCAAAGCGCCCCTGAGCGGCCCCGTGATGCCGCTCAACCGAGTACCCGAC
CCGGTGTTTTCCAGCGGCACCCTGGGCGAAGGCATCGCCATCGACCCACTCAACGACTGCCTGCACGCGCCC
TGCGCCGGGCTGGTCAGCCACCTGGCGCGAACCCGCCACGCGCTCAGCCTGCGCGCCGACAACGGTGCCGAG
TTGCTGCTGCACGTCGGCCTCGACACCGTACAGCTGCAAGGCGAGGGCTTCGAAGCGCTGGTCGAGGAAGGT
GCGCGGGTGATCGAGGGCCAGCCGCTGCTGCGCTTCGACCTGGACCGCGTCGCCCGCGGCAGCCGCAGTCTG
ATCACGGTGATGATCCTGACCAACGGCGACGGCTTCCAGGTACGCCCGCTGACCACCAACCCGGTGGAGGTC
GGCGCGCCGCTCCTGCAACTGAGTCCGGAGAAGGCCGAGCAACGTCCGGCCAATCCCGCGCCTGGCGAAGGC
TCCGCGCAGCGCCAGGTTCGCGGGCGGGCGCGGGTCGCCCATCATGGCGGTCTGCACGCACGCCCGGCAGCG
CTGCTACGCAAGACCGCGCAGGGCTTTTCCAGCCAGGCCGAACTGCACTTCGCCGGGCAAGTGGCCAGCGTC
GACAGCCTGGTCGGTATCATGGGCCTGGGGGTCGCCGAACAGGACGAGGTAGAGGTGATCTGTCGCGGCGAA
GACAGCGAGGCGGCCCTCGGCGCCCTGCTCGCGGCCCTCGCCAGCGCCACCGCGGGGGCTCCGAAGGAGGCT
CCGCGCGCCATCGCCCCGGGCGAGGCGGCGCGACCTGCGGCTGTCGCCGGTACCCTGGCCGGCGTCTGCGCT
TCGCCCGGCCTGGCCAGCGGTCCCCTGGCGCGGCTCGGCGCCATCAGCCTGCCGGCGGATGACGGCCGGCAT
CGTCCCGAGGAACAGCACCTCGCCCTGGACCAGGCCCTGCAACGGGTGCGCGACGACGTACAGGGGAGCCTG
CAGCAGGCCAGGCTGGGCGGCGACGAGAACGAAGCGGCGATCTTTTCCGCGCATCTCGCGCTGCTGGAAGAC
CCGGGTCTGCTGGACGCCGCCGACATGCTGATCGACCAGGGCGTCGGCGCCGCCCACGCCTGGCACCGGGCG
ATCCAGGCCCAGTGCGAGATTCTCCAGGCGCTGGGCAACCTGCTGCTGGCCGAGCGCGCCAACGACCTGCGC
GACCTGGAAAAACGCGTGCTGCGGGTACTGCTCGGCGACACCGCGCCGTTGCGGGTGCCTGCTGGCGCCATC
GTCGCCGCCCGGGAGATCACCCCCTCCGACCTCGCGCCGCTGGTGGATGCCGGCGCGGCTGGCCTGTGCATG
GCCGAAGGCGGCGCCACCTCCCACGTGGCCATCCTCGCCCGCAGCAAAGGCCTGCCGTGCCTGGTGGCGCTC
GGCGCCGGGCTGCTGGAGCTGGAGGAAGGCCGGCAGGTGGTGCTGGACGCCGGCCAGGGCCGGCTGGAACTC
AGCCCCGACGCTCGACGCCTGGAGCAGGTCGCCTTGCAAGTGGCGCAGCGCGAGGAACAACGCCGCCGCCAG
CAGGCCGATGCGCAGCGCGAGGCGCTCACCCGCGACGGCCGGCGCATCGAGATCGGCGCCAACGTCGCCTCG
CCGCGCGAGGCCGCCGAAGCCTTCGCCAACGGCGCCGACGGGGTCGGCCTGCTACGCACCGAGTTTCTCTTT
CTCGAGCGCCGCGCCGCGCCCGACGAAGAGGAGCAGCGCAACGCCTACCAGGAGGTTCTGGACGCCATGGGC
CAGCGCAAGGTGATCATCCGCACCATCGATGTCGGCGGCGACAAGCACCTCGACTACCTGCCGCTGCCGGTG
GAAGAAAACCCTGCGCTGGGCCTGCGCGGCATCCGCCTCGGCCAGGCGCGCCCGGAACTGCTCGACCAGCAG
TTGCGCGCGCTGCTCAGGGTCGAACCGCTGGAACGCTGCCGGATACTGCTGCCGATGGTCAGCGAGGTCGAC
GAACTGCGCGCCATCCGTGGCCGCCTCGGCGAGCTGGCCACGCAATTGGGGATCGAGCGCCTGCCCGAACTC
GGGGTGATGATCGAGGTGCCCTCCGCCGCCCTGCTCGCCGATCAACTGGCCGAACACGCCGACTTCCTCTCC
ATCGGCACCAACGACCTGTCGCAGTATGCCCTGGCCATGGACCGTTGCCACGCCGGCCTGGCCGACCGCATC
GACGCCCTGCACCCGGCGCTGCTGCGACTGATCGCCCAGACCTGCGCCGGAGCAGCCCGCCACGGCCGCTGG
GTCGGCGTCTGCGGTGCGCTGGCCTCGGACCCGCTGGCGACACCGGTACTGGTCGGCCTCGGGGTCGAGGAA
TTGTCCGTCGGGCCGAACCTGGTCGGCGAGATCAAGACCCGGGTGCGCCAGCTCGACGCCGCCGAATGCCGC
CGCCACGCCCAGGCGCTGCTGGACCTGGGCAGCGCCCGGGCGGTGCGCGACGCCTGCCTGCAACACTGGCCG
CTGGCCTGA
Translation:
MNNKNLALKAPLSGPVMPLNRVPDPVFSSGTLGEGIAIDPLNDCLHAPCAGLVSHLARTRHALSLRADNGAE
LLLHVGLDTVQLQGEGFEALVEEGARVIEGQPLLRFDLDRVARGSRSLITVMILTNGDGFQVRPLTTNPVEV
GAPLLQLSPEKAEQRPANPAPGEGSAQRQVRGRARVAHHGGLHARPAALLRKTAQGFSSQAELHFAGQVASV
DSLVGIMGLGVAEQDEVEVICRGEDSEAALGALLAALASATAGAPKEAPRAIAPGEAARPAAVAGTLAGVCA
SPGLASGPLARLGAISLPADDGRHRPEEQHLALDQALQRVRDDVQGSLQQARLGGDENEAAIFSAHLALLED
PGLLDAADMLIDQGVGAAHAWHRAIQAQCEILQALGNLLLAERANDLRDLEKRVLRVLLGDTAPLRVPAGAI
VAAREITPSDLAPLVDAGAAGLCMAEGGATSHVAILARSKGLPCLVALGAGLLELEEGRQVVLDAGQGRLEL
SPDARRLEQVALQVAQREEQRRRQQADAQREALTRDGRRIEIGANVASPREAAEAFANGADGVGLLRTEFLF
LERRAAPDEEEQRNAYQEVLDAMGQRKVIIRTIDVGGDKHLDYLPLPVEENPALGLRGIRLGQARPELLDQQ
LRALLRVEPLERCRILLPMVSEVDELRAIRGRLGELATQLGIERLPELGVMIEVPSAALLADQLAEHADFLS
IGTNDLSQYALAMDRCHAGLADRIDALHPALLRLIAQTCAGAARHGRWVGVCGALASDPLATPVLVGLGVEE
LSVGPNLVGEIKTRVRQLDAAECRRHAQALLDLGSARAVRDACLQHWPLA*
AnnotationID:177GeneID:167
AnnotatorUID: diggins
Modification Date/Time: 2005-04-22 11:11:19
Gene Name:
Confidence Code:3
GeneProduct:putative phosphoenolpyruvate-protein phosphotransferase
Cell Localization:()
Synonyms:nagF
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1080,COG2190
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAK22435.1| (AE005718) PTS system, fructose-specific EIIA/HPr/EI components
           [Caulobacter crescentus CB15]
          Length = 852

 Score =  684 bits (1766), Expect = 0.0
 Identities = 400/842 (47%), Positives = 519/842 (61%), Gaps = 24/842 (2%)

>emb|CAD16568.1| (AL646072) PROBABLE MULTIPHOSPHORYL TRANSFER PROTEIN MTP [Ralstonia
           solanacearum]
          Length = 844

 Score =  467 bits (1201), Expect = e-130
 Identities = 296/690 (42%), Positives = 397/690 (57%), Gaps = 28/690 (4%)

>gb|AAO36300.1| (AE015942) phosphoenolpyruvate-protein phosphotransferase
           [Clostridium tetani E88]
          Length = 571

 Score =  335 bits (859), Expect = 7e-91
 Identities = 187/563 (33%), Positives = 324/563 (57%), Gaps = 17/563 (3%)








 
Structural Features:
COG1080, PtsA, Phosphoenolpyruvate-protein kinase 
(PTS system EI component in bacteria) 
[Carbohydrate transport and metabolism]
CD-Length = 574 residues,  99.1% aligned
Score =  612 bits (1579), Expect = 1e-175
Identities = 259/569 (45%), Positives = 343/569 (60%), Gaps = 11/569 (1%)

COG2190, NagE, Phosphotransferase system IIA components 
[Carbohydrate transport and metabolism]
CD-Length = 156 residues,  99.4% aligned
Score =  186 bits (475), Expect = 1e-47
Identities = 67/155 (43%), Positives = 97/155 (62%), Gaps = 2/155 (1%)







   
Genomic Context:






   
Comment:


















    ReferenceID:337




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:17479




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31798




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:167_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:167
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
301
                           PA3760_tr
                           translation of PA3760
                           842
                           99.52
                           99.64
                           0
                           4200.0
     

     
     
19210
                           gb|AAG07147.1|AE004794_12
                           (AE004794) probable phosphotransferase protein [Pseudomonas aeruginosa PAO1]
                           842
                           99.52
                           99.64
                           0
                           4200.0
     

     
     
19211
                           gb|AAQ58234.1|
                           (AE016911) probable phosphoenolpyruvate-protein phosphotransferase [Chromobacterium violaceum ATCC 12472]
                           846
                           49.88
                           65.36
                           19
                           1958.0
     

     
     
19212
                           gb|AAK22435.1|
                           (AE005718) PTS system, fructose-specific EIIA/HPr/EI components [Caulobacter crescentus CB15]
                           871
                           47.18
                           60.96
                           48
                           1793.0
     

     
     
19213
                           gb|AAK22524.1|
                           (AE005726) PTS system, fructose-specific EIIA/HPr/EI components [Caulobacter crescentus CB15]
                           897
                           45.59
                           59.08
                           74
                           1785.0
     

     






      

          
GC ORFID: 43169How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3760Glimmer Score: 

          
Start: 3606228Stop: 3608756

          
Length: 2529


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3760 translation of PA3760Homolog Bit Score 1622.0

          
Other Homologs:  t_PA3760 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAACAACAAGAATCTCGCCCTCAAAGCGCCCCTGAGCGGCCCCGTGATGCCGCTCAACCGAGTACCCGAC 
CCGGTGTTTTCCAGCGGCACCCTGGGCGAAGGCATCGCCATCGACCCACTCAACGACTGCCTGCACGCGCCC 
TGCGCCGGGCTGGTCAGCCACCTGGCGCGAACCCGCCACGCGCTCAGCCTGCGCGCCGACAACGGTGCCGAG 
TTGCTGCTGCACGTCGGCCTCGACACCGTACAGCTGCAAGGCGAGGGCTTCGAAGCGCTGGTCGAGGAAGGT 
GCGCGGGTGATCGAGGGCCAGCCGCTGCTGCGCTTCGACCTGGACCGCGTCGCCCGCGGCAGCCGCAGTCTG 
ATCACGGTGATGATCCTGACCAACGGCGACGGCTTCCAGGTACGCCCGCTGACCACCAACCCGGTGGAGGTC 
GGCGCGCCGCTCCTGCAACTGAGTCCGGAGAAGGCCGAGCAACGTCCGGCCAATCCCGCGCCTGGCGAAGGC 
TCCGCGCAGCGCCAGGTTCGCGGGCGGGCGCGGGTCGCCCATCATGGCGGTCTGCACGCACGCCCGGCAGCG 
CTGCTACGCAAGACCGCGCAGGGCTTTTCCAGCCAGGCCGAACTGCACTTCGCCGGGCAAGTGGCCAGCGTC 
GACAGCCTGGTCGGTATCATGGGCCTGGGGGTCGCCGAACAGGACGAGGTAGAGGTGATCTGTCGCGGCGAA 
GACAGCGAGGCGGCCCTCGGCGCCCTGCTCGCGGCCCTCGCCAGCGCCACCGCGGGGGCTCCGAAGGAGGCT 
CCGCGCGCCATCGCCCCGGGCGAGGCGGCGCGACCTGCGGCTGTCGCCGGTACCCTGGCCGGCGTCTGCGCT 
TCGCCCGGCCTGGCCAGCGGTCCCCTGGCGCGGCTCGGCGCCATCAGCCTGCCGGCGGATGACGGCCGGCAT 
CGTCCCGAGGAACAGCACCTCGCCCTGGACCAGGCCCTGCAACGGGTGCGCGACGACGTACAGGGGAGCCTG 
CAGCAGGCCAGGCTGGGCGGCGACGAGAACGAAGCGGCGATCTTTTCCGCGCATCTCGCGCTGCTGGAAGAC 
CCGGGTCTGCTGGACGCCGCCGACATGCTGATCGACCAGGGCGTCGGCGCCGCCCACGCCTGGCACCGGGCG 
ATCCAGGCCCAGTGCGAGATTCTCCAGGCGCTGGGCAACCTGCTGCTGGCCGAGCGCGCCAACGACCTGCGC 
GACCTGGAAAAACGCGTGCTGCGGGTACTGCTCGGCGACACCGCGCCGTTGCGGGTGCCTGCTGGCGCCATC 
GTCGCCGCCCGGGAGATCACCCCCTCCGACCTCGCGCCGCTGGTGGATGCCGGCGCGGCTGGCCTGTGCATG 
GCCGAAGGCGGCGCCACCTCCCACGTGGCCATCCTCGCCCGCAGCAAAGGCCTGCCGTGCCTGGTGGCGCTC 
GGCGCCGGGCTGCTGGAGCTGGAGGAAGGCCGGCAGGTGGTGCTGGACGCCGGCCAGGGCCGGCTGGAACTC 
AGCCCCGACGCTCGACGCCTGGAGCAGGTCGCCTTGCAAGTGGCGCAGCGCGAGGAACAACGCCGCCGCCAG 
CAGGCCGATGCGCAGCGCGAGGCGCTCACCCGCGACGGCCGGCGCATCGAGATCGGCGCCAACGTCGCCTCG 
CCGCGCGAGGCCGCCGAAGCCTTCGCCAACGGCGCCGACGGGGTCGGCCTGCTACGCACCGAGTTTCTCTTT 
CTCGAGCGCCGCGCCGCGCCCGACGAAGAGGAGCAGCGCAACGCCTACCAGGAGGTTCTGGACGCCATGGGC 
CAGCGCAAGGTGATCATCCGCACCATCGATGTCGGCGGCGACAAGCACCTCGACTACCTGCCGCTGCCGGTG 
GAAGAAAACCCTGCGCTGGGCCTGCGCGGCATCCGCCTCGGCCAGGCGCGCCCGGAACTGCTCGACCAGCAG 
TTGCGCGCGCTGCTCAGGGTCGAACCGCTGGAACGCTGCCGGATACTGCTGCCGATGGTCAGCGAGGTCGAC 
GAACTGCGCGCCATCCGTGGCCGCCTCGGCGAGCTGGCCACGCAATTGGGGATCGAGCGCCTGCCCGAACTC 
GGGGTGATGATCGAGGTGCCCTCCGCCGCCCTGCTCGCCGATCAACTGGCCGAACACGCCGACTTCCTCTCC 
ATCGGCACCAACGACCTGTCGCAGTATGCCCTGGCCATGGACCGTTGCCACGCCGGCCTGGCCGACCGCATC 
GACGCCCTGCACCCGGCGCTGCTGCGACTGATCGCCCAGACCTGCGCCGGAGCAGCCCGCCACGGCCGCTGG 
GTCGGCGTCTGCGGTGCGCTGGCCTCGGACCCGCTGGCGACACCGGTACTGGTCGGCCTCGGGGTCGAGGAA 
TTGTCCGTCGGGCCGAACCTGGTCGGCGAGATCAAGACCCGGGTGCGCCAGCTCGACGCCGCCGAATGCCGC 
CGCCACGCCCAGGCGCTGCTGGACCTGGGCAGCGCCCGGGCGGTGCGCGACGCCTGCCTGCAACACTGGCCG 
CTGGCCTGA