ViewGene
Locus Name:
GeneID:
Location:

GeneID:1668
TrivialName: PA14_00750
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_00750
PAO1 Ortholog Locus:PA0063
Sequence Length:1128
Protein Length:375
Start: 72925
Stop: 74052
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03453.1|AE004446_1 (AE004446) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 373/375 (99%), Positives = 373/375 (99%)
Sequence:
GTGCTGGTAGGGCGGCGGGCGGTCCGCGTGCTGTGCTATGTTCCGCCCATGCCACGCCGCCTTCGCCATCCG
CTTGCTGACCTTCGACTGCCCCGTTGGGTTCCCTGCCTGGCGCTGTTGGCGCTGAGCGGTTGCTCGACCGTC
TCCTACTACGGGCAACTGGCCAGCGGCCAGTTCGCCCTGCTGCGCGCCCGCGAGCCGGCCGCCGCGGTGATC
GCCGACCCGCAGCGCGACGCGCGCTTGCGCGAACGCCTGGCGAAGGCGGAAAAGGCCCGGCAATTCGCCAGC
GAACGCCTCGGCCTGCCGGACAACCGCAGCTATCGCCTGTACGCCGATATCGGCCGGCCCTACGTGGTATGG
AACGTGTTCGCCACCCCGGAGCTGTCGCTGCAGCCGGTCACCCATTGCTTCCCCATCGCCGGCTGCGTGGCC
TACCGCGGCTACTACAGCGAGGCCGCCGCGCGCGCCGAGGCGGCGCGCCAGCGGGCGCTCGGCGACGACGTT
TACGTCGGCGGGGTGCAGGCCTACTCGACCCTCGGCTGGTTCGACGATCCGATCCTCAGCAGCATGCTGCGC
TGGGACGACGAACGGCTGGCGACCTTGATCTTTCACGAACTGGCGCACCAGAAGTTCTACCTGCGCGACGAC
ACCGCCTTCAACGAATCCTTCGCCACCTTCGTCGAACAGGAAGGTACCCGCCAGTGGCGCGAGTATCGTGGA
CTGCCGCCGGCGGACGGCCGCGAGGAGAAGCGCCGCGAGCAGTTCACCGCGCTGGTCCTGGCCAGTCGTGCG
CGCCTCGAAGCACTCTATGCCGGGCCGTTGGACGATGCCGCCAAGCGTGCCGGCAAGGCTGCCGAATTCCAG
CGCCTGCGCCGCGAGTATACGGCGCTGAGCCAGCGCGAATGGGGCGGCGAGTCGCCGTTCAAGGCCTGGATC
GACGCGCCGTTCAACAATGCCAAGCTGCTTCCCTTCGGCCTCTACGACCAATGGGTGGCGGCGTTCGCCGCG
CTGTTCCGCCAGGTCGGCGGCAACTGGCCGGCGTTCTATGCGCGGGTCCGTGCCCTTGGCCAGCTCCCCCTG
GCAGAGCGCCAGGCGGCGTTGCAGCGGCTGGCCGCCGCAGCGCCCTGA
Translation:
MLVGRRAVRVLCYVPPMPRRLRHPLADLRLPRWVPCLALLALSGCSTVSYYGQLASGQFALLRAREPAAAVI
ADPQRDARLRERLAKAEKARQFASERLGLPDNRSYRLYADIGRPYVVWNVFATPELSLQPVTHCFPIAGCVA
YRGYYSEAAARAEAARQRALGDDVYVGGVQAYSTLGWFDDPILSSMLRWDDERLATLIFHELAHQKFYLRDD
TAFNESFATFVEQEGTRQWREYRGLPPADGREEKRREQFTALVLASRARLEALYAGPLDDAAKRAGKAAEFQ
RLRREYTALSQREWGGESPFKAWIDAPFNNAKLLPFGLYDQWVAAFAALFRQVGGNWPAFYARVRALGQLPL
AERQAALQRLAAAAP*
AnnotationID:1677GeneID:1668
AnnotatorUID: diggins
Modification Date/Time: 2005-03-22 17:05:06
Gene Name:
Confidence Code:3
GeneProduct:putative aminopeptidase
Cell Localization:()
Synonyms:PA0063
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG4324
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>emb|CAD16565.1| (AL646072) PUTATIVE ZINC PROTEASE PROTEIN [Ralstonia solanacearum]
          Length = 384

 Score =  299 bits (766), Expect = 2e-80
 Identities = 165/335 (49%), Positives = 205/335 (61%), Gaps = 6/335 (1%)








 
Structural Features:
COG4324, COG4324, Predicted aminopeptidase
CD-Length = 376 residues, 100.0% aligned
Score =  557 bits (1436), Expect = 8e-160
Identities = 220/376 (58%), Positives = 242/376 (64%), Gaps = 3/376 (0%)






   
Genomic Context:






   
Comment:


















    ReferenceID:14409




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20486




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33416




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1668_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1668
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2937
                           PA0063_tr
                           translation of PA0063
                           375
                           99.46
                           99.46
                           0
                           1949.0
     

     
     
91547
                           gb|AAG03453.1|AE004446_1
                           (AE004446) hypothetical protein PA0063 [Pseudomonas aeruginosa PAO1]
                           375
                           99.20
                           99.46
                           0
                           1946.0
     

     
     
91549
                           gb|AAO53700.1|
                           (AE016856) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           376
                           63.03
                           72.60
                           26
                           1240.0
     

     
     
91548
                           gb|AAN65727.1|AE016198_14
                           (AE016774) conserved hypothetical protein [Pseudomonas putida KT2440]
                           403
                           60.29
                           69.97
                           44
                           1250.0
     

     
     
91550
                           emb|CAD16565.1|
                           (AL646072) PUTATIVE ZINC PROTEASE PROTEIN [Ralstonia solanacearum]
                           416
                           41.34
                           51.20
                           73
                           763.0
     

     






      

          
GC ORFID: 44670How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0063Glimmer Score: 

          
Start: 5874262Stop: 5875389

          
Length: 1128


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0063 translation of PA0063Homolog Bit Score 755.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene2994 (ORF: BLASTX 468.0), t_PA0063 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGCTGGTAGGGCGGCGGGCGGTCCGCGTGCTGTGCTATGTTCCGCCCATGCCACGCCGCCTTCGCCATCCG 
CTTGCTGACCTTCGACTGCCCCGTTGGGTTCCCTGCCTGGCGCTGTTGGCGCTGAGCGGTTGCTCGACCGTC 
TCCTACTACGGGCAACTGGCCAGCGGCCAGTTCGCCCTGCTGCGCGCCCGCGAGCCGGCCGCCGCGGTGATC 
GCCGACCCGCAGCGCGACGCGCGCTTGCGCGAACGCCTGGCGAAGGCGGAAAAGGCCCGGCAATTCGCCAGC 
GAACGCCTCGGCCTGCCGGACAACCGCAGCTATCGCCTGTACGCCGATATCGGCCGGCCCTACGTGGTATGG 
AACGTGTTCGCCACCCCGGAGCTGTCGCTGCAGCCGGTCACCCATTGCTTCCCCATCGCCGGCTGCGTGGCC 
TACCGCGGCTACTACAGCGAGGCCGCCGCGCGCGCCGAGGCGGCGCGCCAGCGGGCGCTCGGCGACGACGTT 
TACGTCGGCGGGGTGCAGGCCTACTCGACCCTCGGCTGGTTCGACGATCCGATCCTCAGCAGCATGCTGCGC 
TGGGACGACGAACGGCTGGCGACCTTGATCTTTCACGAACTGGCGCACCAGAAGTTCTACCTGCGCGACGAC 
ACCGCCTTCAACGAATCCTTCGCCACCTTCGTCGAACAGGAAGGTACCCGCCAGTGGCGCGAGTATCGTGGA 
CTGCCGCCGGCGGACGGCCGCGAGGAGAAGCGCCGCGAGCAGTTCACCGCGCTGGTCCTGGCCAGTCGTGCG 
CGCCTCGAAGCACTCTATGCCGGGCCGTTGGACGATGCCGCCAAGCGTGCCGGCAAGGCTGCCGAATTCCAG 
CGCCTGCGCCGCGAGTATACGGCGCTGAGCCAGCGCGAATGGGGCGGCGAGTCGCCGTTCAAGGCCTGGATC 
GACGCGCCGTTCAACAATGCCAAGCTGCTTCCCTTCGGCCTCTACGACCAATGGGTGGCGGCGTTCGCCGCG 
CTGTTCCGCCAGGTCGGCGGCAACTGGCCGGCGTTCTATGCGCGGGTCCGTGCCCTTGGCCAGCTCCCCCTG 
GCAGAGCGCCAGGCGGCGTTGCAGCGGCTGGCCGCCGCAGCGCCCTGA