ViewGene
Locus Name:
GeneID:
Location:

GeneID:1667
TrivialName: PA14_18370
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_18370
PAO1 Ortholog Locus:PA3552
Sequence Length:1149
Protein Length:382
Start: 1578269
Stop: 1577121
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06940.1|AE004776_3 (AE004776) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 380/382 (99%), Positives = 381/382 (99%)
Sequence:
ATGTCACTGGACTTTCTGCCATTCTCCCGGCCAAGCATCGGCGAGGACGAAATCGCCGCCGTGGAGCAGGTC
CTGCGTTCCGGCTGGATCACCACCGGGCCGAAGAACCAGGAGCTTGAACAGCGCTTCGCCGAACGCCTCGGC
TGCCGCCACGCGGTGGCGCTATCCTCGGCCACCGGCGCCCTGCACGTCACCCTGCTGGCGCTGGGCATCGGC
CCCGGCGACGAAGTGATCACGCCGTCGCTGACCTGGGTCTCCACCGCCAACGTCATCACCCTGCTCGGCGCC
ACCCCGGTGTTCGTCGACGTCGACCGCGACACCCTGATGTGTTCGGCGCAGGCAGTGGAAGCCGCCATCGGC
CCGCGCACCCGCGCCATCGTGCCGGTGCACTACGCCGGCTCCACCCTGGATCTCGAAGGCCTGCGCACGGTC
GCCGGGCGCCACGGCATCGCCCTGGTCGAGGACGCCGCCCACGCGGTCGGCAGCGAATACCGCGGGCGCCCG
GTAGGCTCCCGCGGCACGGCGATCTTTTCCTTCCACGCGATCAAGAACCTGACCTGCGCCGAAGGCGCGATG
TTCGTCAGCGACGACAGCGCCCTCGCCGAACGGGTCCGCCGCCTCAAGTTCCACGGCCTCGGGGTCGATGCC
TACGACCGCCTGAGCCATGGACGCAAGCCGCAGGCGGAAGTGATCGAGCCCGGTTTCAAATACAACCTGGCC
GACCTCAACGCCGCCCTCGCGCTGGTCCAGCTCAAGCGCCTGGACGCGCTCAACGCGCGCCGCCAGGCCCTC
GCCGAACGCTACCTGGAGCGCCTCGCCGGCCTGCCGCTGGCGCCGCTCGGCCTGCCCGCGCACAAGCAGCGC
CACGCCTGGCACCTGTTCATCCTGCGCATCGACGCCGAGGCCTGCGGCCTGGGCCGCGACGCCTTCATGGAA
GCCCTGAAGGCGCGCGGCATCGGTAGCGGCATCCATTTCATCGCCAGTCACCTGCACCACTACTACCGCCAG
CGCCAGCCGCGCCTGAGCCTGCCCAACAGCGAGTGGAACTCGGCCCGCCTGTGCTCCATCCCGCTGTTCCCC
GACATGCGCGACGACGACATCGAGCGCGTCGCCCGCGCCATCGAGGACATCCTGGAGAAACGTCGATGA
Translation:
MSLDFLPFSRPSIGEDEIAAVEQVLRSGWITTGPKNQELEQRFAERLGCRHAVALSSATGALHVTLLALGIG
PGDEVITPSLTWVSTANVITLLGATPVFVDVDRDTLMCSAQAVEAAIGPRTRAIVPVHYAGSTLDLEGLRTV
AGRHGIALVEDAAHAVGSEYRGRPVGSRGTAIFSFHAIKNLTCAEGAMFVSDDSALAERVRRLKFHGLGVDA
YDRLSHGRKPQAEVIEPGFKYNLADLNAALALVQLKRLDALNARRQALAERYLERLAGLPLAPLGLPAHKQR
HAWHLFILRIDAEACGLGRDAFMEALKARGIGSGIHFIASHLHHYYRQRQPRLSLPNSEWNSARLCSIPLFP
DMRDDDIERVARAIEDILEKRR*
AnnotationID:1676GeneID:1667
AnnotatorUID: diggins
Modification Date/Time: 2005-04-20 05:05:18
Gene Name:
Confidence Code:3
GeneProduct:putative aminotransferease
Cell Localization:()
Synonyms:arnB
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(2) Amino acid biosynthesis and metabolism
Alternate Gene Product Name:putative lipopolysaccharide biosynthesis protein
Functional Category Confidence Code:5
COGs:pfam01041,COG0399
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAK69640.1|AF336802_2 (AF336802) putative transaminase [Yersinia pseudotuberculosis]
          Length = 384

 Score =  514 bits (1324), Expect = e-145
 Identities = 246/378 (65%), Positives = 297/378 (78%)

>gb|AAO68272.1| (AE016836) putative lipopolysaccharide biosynthesis protein
           [Salmonella enterica subsp. enterica serovar Typhi Ty2]
          Length = 385

 Score =  493 bits (1268), Expect = e-138
 Identities = 232/377 (61%), Positives = 297/377 (78%)

>emb|CAA07666.1| (AJ007747) putative amino-sugar biosynthesis protein [Bordetella
           bronchiseptica]
          Length = 395

 Score =  302 bits (773), Expect = 3e-81
 Identities = 167/393 (42%), Positives = 241/393 (61%), Gaps = 20/393 (5%)








 
Structural Features:
pfam01041, DegT_DnrJ_EryC1, DegT/DnrJ/EryC1/StrS aminotransferase family. 
CD-Length = 364 residues,  99.7% aligned
Score =  383 bits (985), Expect = 2e-107
Identities = 181/371 (48%), Positives = 239/371 (64%), Gaps = 15/371 (4%)

COG0399, WecE, Predicted pyridoxal phosphate-dependent enzyme apparently 
involved in regulation of cell wall biogenesis 
[Cell envelope biogenesis, outer membrane]
CD-Length = 374 residues, 100.0% aligned
Score =  446 bits (1149), Expect = 2e-126
Identities = 185/384 (48%), Positives = 253/384 (65%), Gaps = 13/384 (3%)







   
Genomic Context:






   
Comment:
other possible gene name: yfbE


















    ReferenceID:3337




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20484




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32017




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1667_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1667
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2936
                           PA3552_tr
                           translation of PA3552
                           382
                           99.47
                           99.73
                           0
                           1950.0
     

     
     
91509
                           gb|AAG06940.1|AE004776_3
                           (AE004776) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           382
                           99.47
                           99.73
                           0
                           1950.0
     

     
     
91510
                           gb|AAM85484.1|AE013794_5
                           (AE013794) putative enzyme [Yersinia pestis KIM]
                           385
                           63.89
                           77.14
                           4
                           1321.0
     

     
     
91511
                           gb|AAK69640.1|AF336802_2
                           (AF336802) putative transaminase [Yersinia pseudotuberculosis]
                           385
                           63.89
                           77.14
                           4
                           1321.0
     

     
     
91512
                           emb|CAC91226.1|
                           (AJ414152) conserved hypothteical protein [Yersinia pestis CO92]
                           385
                           63.89
                           77.14
                           4
                           1321.0
     

     






      

          
GC ORFID: 44669How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3552Glimmer Score: 

          
Start: 3375666Stop: 3376814

          
Length: 1149


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3552 translation of PA3552Homolog Bit Score 755.0

          
Other Homologs:  psyr_15may02_Scaffold6_revised_gene6697 (ORF: BLASTX 571.0), t_PA3552 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTCACTGGACTTTCTGCCATTCTCCCGGCCAAGCATCGGCGAGGACGAAATCGCCGCCGTGGAGCAGGTC 
CTGCGTTCCGGCTGGATCACCACCGGGCCGAAGAACCAGGAGCTTGAACAGCGCTTCGCCGAACGCCTCGGC 
TGCCGCCACGCGGTGGCGCTATCCTCGGCCACCGGCGCCCTGCACGTCACCCTGCTGGCGCTGGGCATCGGC 
CCCGGCGACGAAGTGATCACGCCGTCGCTGACCTGGGTCTCCACCGCCAACGTCATCACCCTGCTCGGCGCC 
ACCCCGGTGTTCGTCGACGTCGACCGCGACACCCTGATGTGTTCGGCGCAGGCAGTGGAAGCCGCCATCGGC 
CCGCGCACCCGCGCCATCGTGCCGGTGCACTACGCCGGCTCCACCCTGGATCTCGAAGGCCTGCGCACGGTC 
GCCGGGCGCCACGGCATCGCCCTGGTCGAGGACGCCGCCCACGCGGTCGGCAGCGAATACCGCGGGCGCCCG 
GTAGGCTCCCGCGGCACGGCGATCTTTTCCTTCCACGCGATCAAGAACCTGACCTGCGCCGAAGGCGCGATG 
TTCGTCAGCGACGACAGCGCCCTCGCCGAACGGGTCCGCCGCCTCAAGTTCCACGGCCTCGGGGTCGATGCC 
TACGACCGCCTGAGCCATGGACGCAAGCCGCAGGCGGAAGTGATCGAGCCCGGTTTCAAATACAACCTGGCC 
GACCTCAACGCCGCCCTCGCGCTGGTCCAGCTCAAGCGCCTGGACGCGCTCAACGCGCGCCGCCAGGCCCTC 
GCCGAACGCTACCTGGAGCGCCTCGCCGGCCTGCCGCTGGCGCCGCTCGGCCTGCCCGCGCACAAGCAGCGC 
CACGCCTGGCACCTGTTCATCCTGCGCATCGACGCCGAGGCCTGCGGCCTGGGCCGCGACGCCTTCATGGAA 
GCCCTGAAGGCGCGCGGCATCGGTAGCGGCATCCATTTCATCGCCAGTCACCTGCACCACTACTACCGCCAG 
CGCCAGCCGCGCCTGAGCCTGCCCAACAGCGAGTGGAACTCGGCCCGCCTGTGCTCCATCCCGCTGTTCCCC 
GACATGCGCGACGACGACATCGAGCGCGTCGCCCGCGCCATCGAGGACATCCTGGAGAAACGTCGATGA