ViewGene
Locus Name:
GeneID:
Location:

GeneID:1666
TrivialName: PA14_33770
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_33770
PAO1 Ortholog Locus:PA2389
Sequence Length:1176
Protein Length:391
Start: 3001662
Stop: 3000487
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05777.1|AE004665_4 (AE004665) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 390/391 (99%), Positives = 391/391 (100%)
Sequence:
ATGAGACGAACCCGTAGTACTCGTCGCGCACTGCTCGTCGCAGTCTGCCTCAGCCCCCTGATCGCCCTGGCC
GCCTGGCAGGCCTATCCGTTCCGCAGCAACAGCTTCGATACCGTGAGCGTCAGCCGCGGCAGCATCGAGAGC
AGCGTCTCGGCGCTCGGCACCCTGCAACCGCGGCGCTACGTCGACGTCGGCGCCCAGGCCTCCGGGCAGATC
CGCAAGTTGCACGTCGAGGCCGGGGACGATGTGACGGAAGGCCAGTTGCTGGTCGAGATCGACCCCTCCACC
CAGCAGGCCAAGGTCGATGCCGGCCGCTATTCGATCGAGATGCTCAAGGCCCAGCTGGCCGAGCAACGTGCC
CAGTACACCCTCGCCCGCCAGCAGTACCAGCGCCAGCAGCGGCTGGCTGCCGGCGGCGCGACGCGTACCGAG
GACGTGCAGAGCGCCCAGGCGCAGATGCTCGCCACCCAGGCGCGGATCGAGATGTACCAGGCGCAGATCCGC
CAGGCCCAGGCCTCGTTGCGCAGCGACGAAGCCGAACTCGGCTATACCCGCATCTACGCGCCGATGTCCGGC
ACGGTGGTGGCGGTCGATGCGCGCGAAGGCCAGACCCTCAATGCCCAGCAGCAGACCCCGTTGATCCTGCGG
ATCGCCaAATTGTCGCCGATGACCGTCTGGGCCcaggTTTCGGAAGCCGACATCGGCCGGGTCaaGCCTGGC
ATGCCGGCCTACTTCACGACCCTCAGCGGCGAAGGCCGGCGCTGGACCGGCAAGGTCCGGCAGATCCTCCCG
GTGCCGCCCAAGCCGCTGGACCAGAGCAACCAGGGCGGCGGCAGCCCCACCAGCGGCAGCGGCGGGCAGAGC
GGCAGCGGCCGGGTGGTGCTGTATACCGTGCTGGTCGACGTGGACAACGGCGACCACCAACTGATGGCGGAA
ATGACCGCCCAGGTGTTCTTCGTCGCCGCCACCGCGGAAAACATCCTCACCGCGCCGGTCGCCGCCATCCAC
GACGACGGCAAGGGCGGCCAGGTCGCCTGGGTGGTCGGCAGCAACGGCAAGCCGCAGAGCCGCCAGATCAGG
ACCGGCATCAGCGACCGCCTGCGGGTACAGGTGCTTGCCGGCCTGGAGGAAGGCGACCGCTTGCTGATGGCC
GCTCCCGACGGCAGCGACAGCTGA
Translation:
MRRTRSTRRALLVAVCLSPLIALAAWQAYPFRSNSFDTVSVSRGSIESSVSALGTLQPRRYVDVGAQASGQI
RKLHVEAGDDVTEGQLLVEIDPSTQQAKVDAGRYSIEMLKAQLAEQRAQYTLARQQYQRQQRLAAGGATRTE
DVQSAQAQMLATQARIEMYQAQIRQAQASLRSDEAELGYTRIYAPMSGTVVAVDAREGQTLNAQQQTPLILR
IAKLSPMTVWAQVSEADIGRVKPGMPAYFTTLSGEGRRWTGKVRQILPVPPKPLDQSNQGGGSPTSGSGGQS
GSGRVVLYTVLVDVDNGDHQLMAEMTAQVFFVAATAENILTAPVAAIHDDGKGGQVAWVVGSNGKPQSRQIR
TGISDRLRVQVLAGLEEGDRLLMAAPDGSDS*
AnnotationID:1675GeneID:1666
AnnotatorUID: diggins
Modification Date/Time: 2005-03-06 08:08:47
Gene Name:
Confidence Code:3
GeneProduct:putative ABC export system, membrane fusion protein
Cell Localization:()
Synonyms:PA2389
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(19) Protein secretion/export apparatus
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0845
Secondary Functional Category(ies):membrane proteins
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO55677.1| (AE016863) efflux transporter, RND family, MFP subunit [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 390

 Score =  534 bits (1375), Expect = e-151
 Identities = 276/390 (70%), Positives = 326/390 (83%), Gaps = 3/390 (0%)

>gb|AAN69790.1|AE016615_6 (AE016789) ABC export system, membrane fusion protein [Pseudomonas
           putida KT2440]
          Length = 392

 Score =  518 bits (1334), Expect = e-146
 Identities = 274/391 (70%), Positives = 323/391 (82%), Gaps = 3/391 (0%)








 
Structural Features:
COG0845, AcrA, Membrane-fusion protein 
[Cell envelope biogenesis, outer membrane]
CD-Length = 372 residues,  96.2% aligned
Score =  109 bits (272), Expect = 6e-25
Identities = 106/394 (26%), Positives = 169/394 (42%), Gaps = 42/394 (10%)






   
Genomic Context:






   
Comment:


















    ReferenceID:3335




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20482




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32938




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1666_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1666
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2935
                           PA2389_tr
                           translation of PA2389
                           391
                           99.74
                           99.99
                           0
                           1949.0
     

     
     
91503
                           gb|AAG05777.1|AE004665_4
                           (AE004665) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           391
                           99.74
                           99.99
                           0
                           1949.0
     

     
     
91504
                           gb|AAO55677.1|
                           (AE016863) efflux transporter, RND family, MFP subunit [Pseudomonas syringae pv. tomato str. DC3000]
                           392
                           70.40
                           83.16
                           3
                           1378.0
     

     
     
91505
                           gb|AAN69790.1|AE016615_6
                           (AE016789) ABC export system, membrane fusion protein [Pseudomonas putida KT2440]
                           393
                           69.72
                           82.18
                           3
                           1339.0
     

     
     
91506
                           emb|CAD84993.1|
                           (BX321859) conserved hypothetical protein [Nitrosomonas europaea ATCC 19718]
                           413
                           47.45
                           64.89
                           37
                           903.0
     

     






      

          
GC ORFID: 44668How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2389Glimmer Score: 

          
Start: 1952254Stop: 1953429

          
Length: 1176


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2389 translation of PA2389Homolog Bit Score 755.0

          
Other Homologs:  psyr_15may02_Scaffold1_revised_gene461 (ORF: BLASTX 528.0), t_PA2389 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGACGAACCCGTAGTACTCGTCGCGCACTGCTCGTCGCAGTCTGCCTCAGCCCCCTGATCGCCCTGGCC 
GCCTGGCAGGCCTATCCGTTCCGCAGCAACAGCTTCGATACCGTGAGCGTCAGCCGCGGCAGCATCGAGAGC 
AGCGTCTCGGCGCTCGGCACCCTGCAACCGCGGCGCTACGTCGACGTCGGCGCCCAGGCCTCCGGGCAGATC 
CGCAAGTTGCACGTCGAGGCCGGGGACGATGTGACGGAAGGCCAGTTGCTGGTCGAGATCGACCCCTCCACC 
CAGCAGGCCAAGGTCGATGCCGGCCGCTATTCGATCGAGATGCTCAAGGCCCAGCTGGCCGAGCAACGTGCC 
CAGTACACCCTCGCCCGCCAGCAGTACCAGCGCCAGCAGCGGCTGGCTGCCGGCGGCGCGACGCGTACCGAG 
GACGTGCAGAGCGCCCAGGCGCAGATGCTCGCCACCCAGGCGCGGATCGAGATGTACCAGGCGCAGATCCGC 
CAGGCCCAGGCCTCGTTGCGCAGCGACGAAGCCGAACTCGGCTATACCCGCATCTACGCGCCGATGTCCGGC 
ACGGTGGTGGCGGTCGATGCGCGCGAAGGCCAGACCCTCAATGCCCAGCAGCAGACCCCGTTGATCCTGCGG 
ATCGCCaAATTGTCGCCGATGACCGTCTGGGCCcaggTTTCGGAAGCCGACATCGGCCGGGTCaaGCCTGGC 
ATGCCGGCCTACTTCACGACCCTCAGCGGCGAAGGCCGGCGCTGGACCGGCAAGGTCCGGCAGATCCTCCCG 
GTGCCGCCCAAGCCGCTGGACCAGAGCAACCAGGGCGGCGGCAGCCCCACCAGCGGCAGCGGCGGGCAGAGC 
GGCAGCGGCCGGGTGGTGCTGTATACCGTGCTGGTCGACGTGGACAACGGCGACCACCAACTGATGGCGGAA 
ATGACCGCCCAGGTGTTCTTCGTCGCCGCCACCGCGGAAAACATCCTCACCGCGCCGGTCGCCGCCATCCAC 
GACGACGGCAAGGGCGGCCAGGTCGCCTGGGTGGTCGGCAGCAACGGCAAGCCGCAGAGCCGCCAGATCAGG 
ACCGGCATCAGCGACCGCCTGCGGGTACAGGTGCTTGCCGGCCTGGAGGAAGGCGACCGCTTGCTGATGGCC 
GCTCCCGACGGCAGCGACAGCTGA