ViewGene

Locus Name:
GeneID:
Location:

GeneID:1665
TrivialName: PA14_32830
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_32830
PAO1 Ortholog Locus:
Sequence Length:2670
Protein Length:889
Start: 2873250
Stop: 2870581
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05846.1|AE004673_6 (AE004673) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 359/362 (99%), Positives = 361/362 (99%)
Sequence:
ATGCGCATCCCCCCATACTTCCCCCGTCTCGGCGCCCTCGCCCTGGCCTGCGCCCTGGCCCTGCCCGCGCAG
GCGGCCGAGCGCGCCTGGAGCTACAGCTACAACGCCCTCGGCCTGATCGAGCGCGCCGACGGTCCGCGCACC
GATGTGCAGGACGTCACCCTCTATGCCTACGACAGTCGCGGCAACCTGACCCAGGTGACCAACGCCCTCGGC
CAGGTCACCCGCCTCGGCGACTATGACGAGCGCGGCAAGCCCGGCAGCATCACCGATGCCAACGGCGTCACC
AGCAGCCTCGCCTACACCGGCGTCGACGGCTGGCTGGCCTCCGTCAGCACCGCCGGCAGCACCACCCGCTTC
GACTACGACGCGGTCGGCCAGATCACCCGCGTCACCCGTGGCGACGGTAGTTGGCTGAGCTACGAATACGAC
GACGCACGGCGCCTGGTGGCGATCGGCAACAACCTCGGCGAACGCCTCGAATACGACGTCGACACCAAGGGC
AATCGCACCGCCCAGCGCATCAAGGACGCCAGCGGCAGCCTGGTGCGCCAGCAGCAATGGGCCTACGACGAG
CTTGGCCGGCTGCTCCGCGCGGTCGGCGCCGGCGGCCAGACACGCAGCTTCGCCTACGACCTCAACGACAAT
CCGGTCGGCGAAACCAACCCGCGCCAGTTCGCCCACAGCCAGGCCTTCGATGCCCTCGACCGGCTGGTCGGC
CAGAGCGATCCCCTCGGCGGCAAGACCCGACTCGCCTACGACGCCCAGGACAACCTCACCGAGGTCAAGGAC
CCGCGCGGCGTCACCACCCGCTACGAATACGACGGCCTCGGCAACCTGACCCGACTGGTCAGCCCGGACAGC
GGCACCACCACCTTCGAGCACGACGCCGCCGGCAACGTCATCCGCCGTACCGACGCTCGCGGTGCGGTCACC
GAGTATCGCTACGACGCCCTCAATCGCCTGATCGAGCGCCACTCGCCGAGCGACCCGAGCCTCGACGTACAG
TACCGCTACGACCTCACCGCCGACGGTAACAAAGGCATCGGCCGCCTGGGCGCCATCGAAGGTGCCCGCGAC
AGCCTGGTGTACCGCTACGACGAGCGCGGCAACCTGGTCGAGCAGGTACGCAGCATCCGCCTCGACCAGCAG
ACCCTGCTCGACCGCGTGACCTACCGCTACGACGCGGCCAACCAACTGCTGGAGATCGGCTACCCCTCCGGC
CTCGCCATCGGCTACCCGCGCAACGCCGGCGGCCAGGTCGCCAGCGTGACCCTGGCAGTAGGCGACAAGGCG
CCGAGCCCCCTGGTCGGGCAGATCGCCTACCTGCCCTTCGGCCCGCTGCAGCGCCTGACCTGGGGCAACGGC
ATCGCCCTCAGCCGCGAGTACGACCAGGACTACCAACTGCTGCGGCAGAAGGTCGGCCCCTGGCAGAGCGAC
TACCAGCACGATGCCAATGGCAATATCCAGCAGCACCGCCATAGCCTCTGGGGCACCCTGGACTACCAGTAC
GACCCGCTGGACCGCCTGACCGAGGAACGCGGCGTCCAGGGCGGGCGCAGCTATGCCTACGACGCGGTCGGC
AACCGCACCCAACGCAGCGACAACCCCGCCTCAGGCGGCACCGCCAGCAGCCAGGACTACCAGTACGCGCCC
GACAGCAACCGATTGACCGCCATCGGCGCGCAAGCGGTGACCAGCGACGCCGCCGGCAACCTCACCCAGGAC
CGCGCCGCACGCAAACTGGCCTACGACGCCCAGGGCCGCCTGCAAAGCGTCAGCCTCGACGGCCAGCAGGTC
GCCGAATACCGCTACAACGCCCTCGGCCAGCGCATCGTCAAGCTCACCCCCGAGAGCGTCACCACCTACCTC
TACGGTCCCGACGGCCAGTTGCTCGGCGAAGCCGAACACGACGGCAGCGGCCGGAAACTGCGAGCCCAGTAC
TACCTGTGGCTGGACAGCCTGCCGCTGGCCACCATCGACGCCGACTACGACGCCCAGGGCAAGGTCGGCAAC
CCGACCCTGCTCTACCTCCATGGCGACCACCTCGACACCCCGCGCCTGGCCACCGACGCCAGCGGCCAGATC
GCCTGGCAGTGGCAGTCCGACGCCTTCGGCCGCGGCGAAGCGCTGAGCCAGGGCAGCACCCAGGTCAACCTG
CGCTTCCCCGGGCAGTACTACGATGCGGAGAGCGGGCTGCACTACAACTACTTCCGCGACTATGATCCGGAG
ACTGGGCGGTATGTGGAGAGTGATCCTGTAGAAACTCTAAGAAAGCTAAACAACCCTGAAATGACATTTTTA
AATTCTGGCGAGAGCATGCTGCAAGCCACTCCGTATTGGGAACATGGATTCACGCCGAATCATAACTACACA
TACTCCGATAACAATCCAACTGCAAAAAGCGACAAGCATGGTCTTTCACCAAACCCTACGGACAACTTGATC
TACACACCTGACACCAACTGCACATGTACATTAGAGTGCAAGAAAAAATTTACTGGAAATGGAAAGTCTTTC
CTTGTGGGAGCTCTATGTAGCAAAGCCACCACCCCGTTCTTTGGGGGAGTAGTATGCAATAGCACAATAGTA
ATGATCTGCGGAGCATCTTGCAGCCAAGAGTGCAATAGAGCACCAAGCTGCGAAAAAGAAGGAAGCGGCAAT
GAGTAG
Translation:
MRIPPYFPRLGALALACALALPAQAAERAWSYSYNALGLIERADGPRTDVQDVTLYAYDSRGNLTQVTNALG
QVTRLGDYDERGKPGSITDANGVTSSLAYTGVDGWLASVSTAGSTTRFDYDAVGQITRVTRGDGSWLSYEYD
DARRLVAIGNNLGERLEYDVDTKGNRTAQRIKDASGSLVRQQQWAYDELGRLLRAVGAGGQTRSFAYDLNDN
PVGETNPRQFAHSQAFDALDRLVGQSDPLGGKTRLAYDAQDNLTEVKDPRGVTTRYEYDGLGNLTRLVSPDS
GTTTFEHDAAGNVIRRTDARGAVTEYRYDALNRLIERHSPSDPSLDVQYRYDLTADGNKGIGRLGAIEGARD
SLVYRYDERGNLVEQVRSIRLDQQTLLDRVTYRYDAANQLLEIGYPSGLAIGYPRNAGGQVASVTLAVGDKA
PSPLVGQIAYLPFGPLQRLTWGNGIALSREYDQDYQLLRQKVGPWQSDYQHDANGNIQQHRHSLWGTLDYQY
DPLDRLTEERGVQGGRSYAYDAVGNRTQRSDNPASGGTASSQDYQYAPDSNRLTAIGAQAVTSDAAGNLTQD
RAARKLAYDAQGRLQSVSLDGQQVAEYRYNALGQRIVKLTPESVTTYLYGPDGQLLGEAEHDGSGRKLRAQY
YLWLDSLPLATIDADYDAQGKVGNPTLLYLHGDHLDTPRLATDASGQIAWQWQSDAFGRGEALSQGSTQVNL
RFPGQYYDAESGLHYNYFRDYDPETGRYVESDPVETLRKLNNPEMTFLNSGESMLQATPYWEHGFTPNHNYT
YSDNNPTAKSDKHGLSPNPTDNLIYTPDTNCTCTLECKKKFTGNGKSFLVGALCSKATTPFFGGVVCNSTIV
MICGASCSQECNRAPSCEKEGSGNE*
AnnotationID:1674GeneID:1665
AnnotatorUID: danlee
Modification Date/Time: 2004-03-08 16:04:07
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
40.8% identical to PA2458, but is almost 2.5X as long as PA2458.
NOTE: GeneID = 1501 is 40.0% idenitical to PA2458 and also ~2.5X as long as PA2458.
Structural Features:
Genomic Context:
Comment:
ReferenceID:3333
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:20480
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:1665

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
2934 PA2458_tr translation of PA2458 889 40.83 41.16 516 1863.0
91502 gb|AAG05846.1|AE004673_6 (AE004673) hypothetical protein PA2458 [Pseudomonas aeruginosa PAO1] 889 40.71 41.16 516 1860.0
GC ORFID: 44667How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: psyr_15may02_Scaffold7_revised_gene7452Glimmer Score:
Start: 2080674Stop: 2083343
Length: 2670
Start Codon: ATGTruncated Start:
Stop Codon: TAGTruncated Stop:
Homolog: psyr_15may02_Scaffold7_revised_gene7452 related to: gi|15597654|ref|NP_251148.1| (NC_002516) hypothetical protein [Pseudomonas aeruginosa] pir||G83338 hypothetical protein PA2458 [imported] - Pseudomonas aeruginosa (strain PAO1) gb|AAG05846.1|AE004673_6 (Homolog Bit Score 756.0
Other Homologs: psyr_15may02_Scaffold7_revised_gene7452 (ORF: GLIMMER)
GC ORF Sequence
ATGCGCATCCCCCCATACTTCCCCCGTCTCGGCGCCCTCGCCCTGGCCTGCGCCCTGGCCCTGCCCGCGCAG
GCGGCCGAGCGCGCCTGGAGCTACAGCTACAACGCCCTCGGCCTGATCGAGCGCGCCGACGGTCCGCGCACC
GATGTGCAGGACGTCACCCTCTATGCCTACGACAGTCGCGGCAACCTGACCCAGGTGACCAACGCCCTCGGC
CAGGTCACCCGCCTCGGCGACTATGACGAGCGCGGCAAGCCCGGCAGCATCACCGATGCCAACGGCGTCACC
AGCAGCCTCGCCTACACCGGCGTCGACGGCTGGCTGGCCTCCGTCAGCACCGCCGGCAGCACCACCCGCTTC
GACTACGACGCGGTCGGCCAGATCACCCGCGTCACCCGTGGCGACGGTAGTTGGCTGAGCTACGAATACGAC
GACGCACGGCGCCTGGTGGCGATCGGCAACAACCTCGGCGAACGCCTCGAATACGACGTCGACACCAAGGGC
AATCGCACCGCCCAGCGCATCAAGGACGCCAGCGGCAGCCTGGTGCGCCAGCAGCAATGGGCCTACGACGAG
CTTGGCCGGCTGCTCCGCGCGGTCGGCGCCGGCGGCCAGACACGCAGCTTCGCCTACGACCTCAACGACAAT
CCGGTCGGCGAAACCAACCCGCGCCAGTTCGCCCACAGCCAGGCCTTCGATGCCCTCGACCGGCTGGTCGGC
CAGAGCGATCCCCTCGGCGGCAAGACCCGACTCGCCTACGACGCCCAGGACAACCTCACCGAGGTCAAGGAC
CCGCGCGGCGTCACCACCCGCTACGAATACGACGGCCTCGGCAACCTGACCCGACTGGTCAGCCCGGACAGC
GGCACCACCACCTTCGAGCACGACGCCGCCGGCAACGTCATCCGCCGTACCGACGCTCGCGGTGCGGTCACC
GAGTATCGCTACGACGCCCTCAATCGCCTGATCGAGCGCCACTCGCCGAGCGACCCGAGCCTCGACGTACAG
TACCGCTACGACCTCACCGCCGACGGTAACAAAGGCATCGGCCGCCTGGGCGCCATCGAAGGTGCCCGCGAC
AGCCTGGTGTACCGCTACGACGAGCGCGGCAACCTGGTCGAGCAGGTACGCAGCATCCGCCTCGACCAGCAG
ACCCTGCTCGACCGCGTGACCTACCGCTACGACGCGGCCAACCAACTGCTGGAGATCGGCTACCCCTCCGGC
CTCGCCATCGGCTACCCGCGCAACGCCGGCGGCCAGGTCGCCAGCGTGACCCTGGCAGTAGGCGACAAGGCG
CCGAGCCCCCTGGTCGGGCAGATCGCCTACCTGCCCTTCGGCCCGCTGCAGCGCCTGACCTGGGGCAACGGC
ATCGCCCTCAGCCGCGAGTACGACCAGGACTACCAACTGCTGCGGCAGAAGGTCGGCCCCTGGCAGAGCGAC
TACCAGCACGATGCCAATGGCAATATCCAGCAGCACCGCCATAGCCTCTGGGGCACCCTGGACTACCAGTAC
GACCCGCTGGACCGCCTGACCGAGGAACGCGGCGTCCAGGGCGGGCGCAGCTATGCCTACGACGCGGTCGGC
AACCGCACCCAACGCAGCGACAACCCCGCCTCAGGCGGCACCGCCAGCAGCCAGGACTACCAGTACGCGCCC
GACAGCAACCGATTGACCGCCATCGGCGCGCAAGCGGTGACCAGCGACGCCGCCGGCAACCTCACCCAGGAC
CGCGCCGCACGCAAACTGGCCTACGACGCCCAGGGCCGCCTGCAAAGCGTCAGCCTCGACGGCCAGCAGGTC
GCCGAATACCGCTACAACGCCCTCGGCCAGCGCATCGTCAAGCTCACCCCCGAGAGCGTCACCACCTACCTC
TACGGTCCCGACGGCCAGTTGCTCGGCGAAGCCGAACACGACGGCAGCGGCCGGAAACTGCGAGCCCAGTAC
TACCTGTGGCTGGACAGCCTGCCGCTGGCCACCATCGACGCCGACTACGACGCCCAGGGCAAGGTCGGCAAC
CCGACCCTGCTCTACCTCCATGGCGACCACCTCGACACCCCGCGCCTGGCCACCGACGCCAGCGGCCAGATC
GCCTGGCAGTGGCAGTCCGACGCCTTCGGCCGCGGCGAAGCGCTGAGCCAGGGCAGCACCCAGGTCAACCTG
CGCTTCCCCGGGCAGTACTACGATGCGGAGAGCGGGCTGCACTACAACTACTTCCGCGACTATGATCCGGAG
ACTGGGCGGTATGTGGAGAGTGATCCTGTAGAAACTCTAAGAAAGCTAAACAACCCTGAAATGACATTTTTA
AATTCTGGCGAGAGCATGCTGCAAGCCACTCCGTATTGGGAACATGGATTCACGCCGAATCATAACTACACA
TACTCCGATAACAATCCAACTGCAAAAAGCGACAAGCATGGTCTTTCACCAAACCCTACGGACAACTTGATC
TACACACCTGACACCAACTGCACATGTACATTAGAGTGCAAGAAAAAATTTACTGGAAATGGAAAGTCTTTC
CTTGTGGGAGCTCTATGTAGCAAAGCCACCACCCCGTTCTTTGGGGGAGTAGTATGCAATAGCACAATAGTA
ATGATCTGCGGAGCATCTTGCAGCCAAGAGTGCAATAGAGCACCAAGCTGCGAAAAAGAAGGAAGCGGCAAT
GAGTAG