ViewGene

Locus Name:
GeneID:
Location:

GeneID:1664
TrivialName: PA14_57760
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_57760
PAO1 Ortholog Locus:PA4446
Sequence Length:1170
Protein Length:389
Start: 5143425
Stop: 5144594
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07834.1|AE004859_3 (AE004859) AlgW protein [Pseudomonas aeruginosa PAO1]
Identities = 387/389 (99%), Positives = 388/389 (99%)
Sequence:
ATGCCCAAGGCCCTGCGTTTCCTCGGCTGGCCCGTGCTGGTCGGCGTGCTGCTGGCCCTGCTAATCATCCAG
CGCAACCCCGAGCTGGTCGGCCTGCCACGCCAGGAGGTGCACGTCGAGCAGGCGCCTCTGCTCAGCCGCCTG
CAGGAAGGCCCGGTGTCCTATGCCAATGCGGTGAGCCGGGCGGCTCCGGCAGTGGCCAACCTGTACACCACC
AAGATGGTCAGCAAGCCCTCCCACCCATTGTTCGACGACCCGATGTTCCGCCGCTTCTTCGGCGACAACCTG
CCACAACAGAAGCGCATGGAATCGAGCCTCGGCTCGGCAGTGATCATGAGCGCGGAAGGCTACCTGCTGACC
AACAACCACGTGACCGCTGGCGCCGACCAGATCATCGTGGCCTTGCGCGACGGCCGCGAAACCATCGCCCAG
TTGGTCGGCAGCGACCCGGAAACCGACCTGGCCGTGCTGAAGATCGACCTTAAGAACCTGCCGGCGATGACC
CTCGGCCGCTCCGACGGCATTCGCACCGGCGACGTCTGCCTCGCCATCGGCAACCCGTTCGGCGTCGGCCAG
ACCGTGACCATGGGCATCATCAGCGCCACCGGACGCAACCAGCTCGGCCTGAACACCTACGAAGACTTCATC
CAGACCGACGCGGCGATCAACCCCGGTAACTCCGGCGGCGCGCTGGTGGACGCTGCCGGCAACCTGATCGGC
ATCAACACGGCGATCTTCTCCAAGTCCGGCGGCTCCCAGGGTATCGGCTTCGCCATCCCGACCAAGCTGGCC
CTGGAGGTCATGCAGTCGATCATCGAGCACGGCCAGGTGATCCGCGGCTGGCTCGGCGTCGAGGTCAAGGCG
CTGACCCCGGAACTGGCGGAGTCGCTGGGCCTCGGCGAAACCGCCGGGATCGTCGTCGCCGGCGTCTATCGC
GACGGTCCGGCGGCGCGCGGCGGCCTGCTGCCGGGCGACGTGATCCTGACCATCGACAAGCAGGAAGCCAGC
GACGGCCGCCGCTCGATGAACCAGGTGGCGCGCACCCGTCCGGGACAGAAGATCAGCATCGTGGTGCTGCGC
AACGGGCAGAAGGTCAACCTGACCGCCGAGGTCGGCCTGCGTCCGCCGCCGGCACCGGCTCCACAGCAGAAA
CAGAACGGCGGCGAGTGA
Translation:
MPKALRFLGWPVLVGVLLALLIIQRNPELVGLPRQEVHVEQAPLLSRLQEGPVSYANAVSRAAPAVANLYTT
KMVSKPSHPLFDDPMFRRFFGDNLPQQKRMESSLGSAVIMSAEGYLLTNNHVTAGADQIIVALRDGRETIAQ
LVGSDPETDLAVLKIDLKNLPAMTLGRSDGIRTGDVCLAIGNPFGVGQTVTMGIISATGRNQLGLNTYEDFI
QTDAAINPGNSGGALVDAAGNLIGINTAIFSKSGGSQGIGFAIPTKLALEVMQSIIEHGQVIRGWLGVEVKA
LTPELAESLGLGETAGIVVAGVYRDGPAARGGLLPGDVILTIDKQEASDGRRSMNQVARTRPGQKISIVVLR
NGQKVNLTAEVGLRPPPAPAPQQKQNGGE*
AnnotationID:1673GeneID:1664
AnnotatorUID: diggins
Modification Date/Time: 2005-05-03 05:05:30
Gene Name:algW
Confidence Code:1
GeneProduct:AlgW protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(26) Translation, post-translational modification, degradation
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0265
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAO57884.1| (AE016872) trypsin domain protein [Pseudomonas syringae pv. tomato
           str. DC3000]
          Length = 386

 Score =  594 bits (1531), Expect = e-169
 Identities = 295/381 (77%), Positives = 339/381 (88%)

>gb|AAN66925.1|AE016321_1 (AE016778) HtrA-like protease AlgW [Pseudomonas putida KT2440]
          Length = 402

 Score =  592 bits (1527), Expect = e-168
 Identities = 292/385 (75%), Positives = 345/385 (89%)
Structural Features:
COG0265, DegQ, Trypsin-like serine proteases, typically periplasmic, 
contain C-terminal PDZ domain 
[Posttranslational modification, protein turnover, chaperones]
CD-Length = 347 residues,  93.1% aligned
Score =  264 bits (674), Expect = 4e-71
Identities = 156/338 (46%), Positives = 209/338 (61%), Gaps = 17/338 (5%)
Genomic Context:
Comment:
ReferenceID:3331
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:20478
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:31547
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:1664_cdd.html
URL:
ReferenceID:32833
Author/Investigator(s): Boucher JC, Martinez-Salazar J, Schurr MJ, Mudd MH, Yu H, Deretic V.
Title: Two distinct loci affecting conversion to mucoidy in Pseudomonas aeruginosa in cystic fibrosis encode homologs of the serine protease HtrA.
PubMed: 8550474
MedLine:
Source:
J Bacteriol. 1996 Jan;178(2):511-23.
Reference Type:Journal
Data:
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=8550474
Homologs By Global Alignment
Gene ID:1664

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
2932 PA4446_tr translation of PA4446 389 99.48 99.74 0 1952.0
91347 gb|AAG07834.1|AE004859_3 (AE004859) AlgW protein [Pseudomonas aeruginosa PAO1] 389 99.48 99.74 0 1952.0
91348 gb|AAC43674.1| (U29172) AlgW [Pseudomonas aeruginosa] 389 91.77 92.28 0 1760.0
91349 gb|AAO57884.1| (AE016872) trypsin domain protein [Pseudomonas syringae pv. tomato str. DC3000] 389 75.83 87.14 3 1527.0
91350 gb|AAN66925.1|AE016321_1 (AE016778) HtrA-like protease AlgW [Pseudomonas putida KT2440] 405 72.09 85.18 19 1527.0
GC ORFID: 44666How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA4446Glimmer Score:
Start: 4407104Stop: 4408273
Length: 1170
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA4446 translation of PA4446Homolog Bit Score 756.0
Other Homologs: psyr_15may02_Scaffold12_revised_gene2020 (ORF: BLASTX 586.0), t_PA4446 (ORF: GLIMMER)
GC ORF Sequence
ATGCCCAAGGCCCTGCGTTTCCTCGGCTGGCCCGTGCTGGTCGGCGTGCTGCTGGCCCTGCTAATCATCCAG
CGCAACCCCGAGCTGGTCGGCCTGCCACGCCAGGAGGTGCACGTCGAGCAGGCGCCTCTGCTCAGCCGCCTG
CAGGAAGGCCCGGTGTCCTATGCCAATGCGGTGAGCCGGGCGGCTCCGGCAGTGGCCAACCTGTACACCACC
AAGATGGTCAGCAAGCCCTCCCACCCATTGTTCGACGACCCGATGTTCCGCCGCTTCTTCGGCGACAACCTG
CCACAACAGAAGCGCATGGAATCGAGCCTCGGCTCGGCAGTGATCATGAGCGCGGAAGGCTACCTGCTGACC
AACAACCACGTGACCGCTGGCGCCGACCAGATCATCGTGGCCTTGCGCGACGGCCGCGAAACCATCGCCCAG
TTGGTCGGCAGCGACCCGGAAACCGACCTGGCCGTGCTGAAGATCGACCTTAAGAACCTGCCGGCGATGACC
CTCGGCCGCTCCGACGGCATTCGCACCGGCGACGTCTGCCTCGCCATCGGCAACCCGTTCGGCGTCGGCCAG
ACCGTGACCATGGGCATCATCAGCGCCACCGGACGCAACCAGCTCGGCCTGAACACCTACGAAGACTTCATC
CAGACCGACGCGGCGATCAACCCCGGTAACTCCGGCGGCGCGCTGGTGGACGCTGCCGGCAACCTGATCGGC
ATCAACACGGCGATCTTCTCCAAGTCCGGCGGCTCCCAGGGTATCGGCTTCGCCATCCCGACCAAGCTGGCC
CTGGAGGTCATGCAGTCGATCATCGAGCACGGCCAGGTGATCCGCGGCTGGCTCGGCGTCGAGGTCAAGGCG
CTGACCCCGGAACTGGCGGAGTCGCTGGGCCTCGGCGAAACCGCCGGGATCGTCGTCGCCGGCGTCTATCGC
GACGGTCCGGCGGCGCGCGGCGGCCTGCTGCCGGGCGACGTGATCCTGACCATCGACAAGCAGGAAGCCAGC
GACGGCCGCCGCTCGATGAACCAGGTGGCGCGCACCCGTCCGGGACAGAAGATCAGCATCGTGGTGCTGCGC
AACGGGCAGAAGGTCAACCTGACCGCCGAGGTCGGCCTGCGTCCGCCGCCGGCACCGGCTCCACAGCAGAAA
CAGAACGGCGGCGAGTGA