ViewGene
Locus Name:
GeneID:
Location:

GeneID:1663
TrivialName: PA14_56030
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_56030
PAO1 Ortholog Locus:PA4311
Sequence Length:1116
Protein Length:371
Start: 5003033
Stop: 5004148
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07699.1|AE004847_6 (AE004847) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 370/371 (99%), Positives = 370/371 (99%)
Sequence:
GTGCACATCGCCGATATGACCATGTTCTACGCGCCTGCCAGCGGGGGGGTACGCACCTATCTCGAAGCCAAG
CATCGCCATCTCTGGCACTATCCCGGCATTCGCCACAGCGTGCTGGTTCCCGGCGCCGGCTATCGCCAGGCG
AACGGCATCCACGAGGTGCCGGCGCCGCCGCTGCCATTCGGCAATGGCTACCGCTTCCCTCTCCGTCGCGGC
CCCTGGCGCAAGGTGCTGCGCAATCTGCAACCGGACCTGATCGAGGTCGGCGACCCGTACCTCACCGCCTGG
GCGGCGCTCGACGCGCGACGTCGGCTGGACGTGCCGGTGATCGGCTTCTACCACTCCGACCTGCCGCTGCTG
GTGAGCAATCGCATGGGCGCCTGGCTCGGCACCAACGCGGACAACTACGTCAGCAAGCTGTACGGCCACTTC
GACCGGGTCCTGGCCCCCAGCCGGGTAATGGCGGAAAAGCTGATGCGCTTGGGCGTCGCCGACGTGCATGTA
CAACCGCTGGGCGTCGACCTGGTCACCTTCCATCCGAGCAACCGCGATCCGGGGCTGCGCCAGGAACTCGGC
CTGGACGAGGAAACCCGCCTGCTGGTGTTCGCCGGGCGCGGTTCGCGGGAAAAGAACCTGCCGGTACTGCTC
GACGCCATCCAGCGCCTCGGCGACGGCTATCACCTGTTGCTGGTGGGTTCCAACATGCCGACCCGGGTACCG
CGCAACACCAGCGTGGTCGACCATTTCTGCGACAGCCGCGAAGTCGCCCGCCTGCTGGCGAGCAGCGACGCG
CTGCTGCACGCCGGTGACCAGGAGACCTTCGGCCTGGTCGCACTCGAAGCGATGGCCAGCGGTATTCCGGTG
GTGGCGGTGCGCGCCGGGGCACTGGCGGAAATAGTCCCGGAGCGTTGCGGCGTGCTCTGCGCACCGAACAAC
GGCGACGCCATGGCCTGCGCGGTGCGCGAACTGTTCAGCCACGACGTCGAGCTGCGCGGCCAGCGCGCCCGC
CGTCACGTCGAGCGCCAGCATGCCTGGGACGCGGTGGTCGCCGGTCTGCTCCTGCACTACCACGCGGTACTC
GGCGACAGCGAGGCGAGGTTCCCGCGCTATGGCTGA
Translation:
MHIADMTMFYAPASGGVRTYLEAKHRHLWHYPGIRHSVLVPGAGYRQANGIHEVPAPPLPFGNGYRFPLRRG
PWRKVLRNLQPDLIEVGDPYLTAWAALDARRRLDVPVIGFYHSDLPLLVSNRMGAWLGTNADNYVSKLYGHF
DRVLAPSRVMAEKLMRLGVADVHVQPLGVDLVTFHPSNRDPGLRQELGLDEETRLLVFAGRGSREKNLPVLL
DAIQRLGDGYHLLLVGSNMPTRVPRNTSVVDHFCDSREVARLLASSDALLHAGDQETFGLVALEAMASGIPV
VAVRAGALAEIVPERCGVLCAPNNGDAMACAVRELFSHDVELRGQRARRHVERQHAWDAVVAGLLLHYHAVL
GDSEARFPRYG*
AnnotationID:1672GeneID:1663
AnnotatorUID: diggins
Modification Date/Time: 2005-06-09 06:06:05
Gene Name:
Confidence Code:3
GeneProduct:putative glycosyl transferase
Cell Localization:()
Synonyms:PA4311
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0438,pfam00534
Secondary Functional Category(ies):cell envelope biogenesis, outer membrane
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN66993.1|AE016327_8 (AE016779) glycosyl transferase, group 1 family protein
           [Pseudomonas putida KT2440]
          Length = 373

 Score =  535 bits (1378), Expect = e-151
 Identities = 260/361 (72%), Positives = 298/361 (82%)








 
Structural Features:
COG0438, RfaG, Glycosyltransferase 
[Cell envelope biogenesis, outer membrane]
CD-Length = 381 residues, 100.0% aligned
Score =  128 bits (322), Expect = 8e-31
Identities = 97/387 (25%), Positives = 152/387 (39%), Gaps = 30/387 (7%)
Identities = 97/387 (25%), Positives = 152/387 (39%), Gaps = 30/387 (7%)

pfam00534, Glycos_transf_1, Glycosyl transferases group 1.
CD-Length = 172 residues,  97.7% aligned
Score = 90.0 bits (223), Expect = 4e-19
Identities = 47/168 (27%), Positives = 84/168 (50%), Gaps = 16/168 (9%)






   
Genomic Context:






   
Comment:


















    ReferenceID:14407




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20476




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36678




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1663_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1663
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2931
                           PA4311_tr
                           translation of PA4311
                           371
                           99.73
                           99.73
                           0
                           1952.0
     

     
     
91344
                           gb|AAG07699.1|AE004847_6
                           (AE004847) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           371
                           99.46
                           99.73
                           0
                           1949.0
     

     
     
91345
                           gb|AAN66993.1|AE016327_8
                           (AE016779) glycosyl transferase, group 1 family protein [Pseudomonas putida KT2440]
                           377
                           69.49
                           79.57
                           10
                           1373.0
     

     
     
91346
                           gb|AAK23933.1|
                           (AE005869) glycosyl transferase, group 1 family protein [Caulobacter crescentus CB15]
                           411
                           41.36
                           52.06
                           49
                           760.0
     

     






      

          
GC ORFID: 44665How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4311Glimmer Score: 

          
Start: 4266709Stop: 4267824

          
Length: 1116


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4311 translation of PA4311Homolog Bit Score 756.0

          
Other Homologs:  t_PA4311 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGCACATCGCCGATATGACCATGTTCTACGCGCCTGCCAGCGGGGGGGTACGCACCTATCTCGAAGCCAAG 
CATCGCCATCTCTGGCACTATCCCGGCATTCGCCACAGCGTGCTGGTTCCCGGCGCCGGCTATCGCCAGGCG 
AACGGCATCCACGAGGTGCCGGCGCCGCCGCTGCCATTCGGCAATGGCTACCGCTTCCCTCTCCGTCGCGGC 
CCCTGGCGCAAGGTGCTGCGCAATCTGCAACCGGACCTGATCGAGGTCGGCGACCCGTACCTCACCGCCTGG 
GCGGCGCTCGACGCGCGACGTCGGCTGGACGTGCCGGTGATCGGCTTCTACCACTCCGACCTGCCGCTGCTG 
GTGAGCAATCGCATGGGCGCCTGGCTCGGCACCAACGCGGACAACTACGTCAGCAAGCTGTACGGCCACTTC 
GACCGGGTCCTGGCCCCCAGCCGGGTAATGGCGGAAAAGCTGATGCGCTTGGGCGTCGCCGACGTGCATGTA 
CAACCGCTGGGCGTCGACCTGGTCACCTTCCATCCGAGCAACCGCGATCCGGGGCTGCGCCAGGAACTCGGC 
CTGGACGAGGAAACCCGCCTGCTGGTGTTCGCCGGGCGCGGTTCGCGGGAAAAGAACCTGCCGGTACTGCTC 
GACGCCATCCAGCGCCTCGGCGACGGCTATCACCTGTTGCTGGTGGGTTCCAACATGCCGACCCGGGTACCG 
CGCAACACCAGCGTGGTCGACCATTTCTGCGACAGCCGCGAAGTCGCCCGCCTGCTGGCGAGCAGCGACGCG 
CTGCTGCACGCCGGTGACCAGGAGACCTTCGGCCTGGTCGCACTCGAAGCGATGGCCAGCGGTATTCCGGTG 
GTGGCGGTGCGCGCCGGGGCACTGGCGGAAATAGTCCCGGAGCGTTGCGGCGTGCTCTGCGCACCGAACAAC 
GGCGACGCCATGGCCTGCGCGGTGCGCGAACTGTTCAGCCACGACGTCGAGCTGCGCGGCCAGCGCGCCCGC 
CGTCACGTCGAGCGCCAGCATGCCTGGGACGCGGTGGTCGCCGGTCTGCTCCTGCACTACCACGCGGTACTC 
GGCGACAGCGAGGCGAGGTTCCCGCGCTATGGCTGA