ViewGene
Locus Name:
GeneID:
Location:

GeneID:1662
TrivialName: PA14_27940
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_27940
PAO1 Ortholog Locus:PA2798
Sequence Length:1185
Protein Length:394
Start: 2418001
Stop: 2419185
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06186.1|AE004707_5 (AE004707) probable two-component response regulator [Pseudomonas aeruginosa PAO1]
Identities = 390/394 (98%), Positives = 392/394 (99%)
Sequence:
ATGCATAAAGTCAGTGCCACGCTGCTGATCATCGATGACGACGAGGTGGTGCGCGAAAGCCTCGCTGCCTAC
TTGGAAGACAGCAACTTCAAGGTGTTGCAGGCCCTCAACGGTCTGCAGGGCCTGCAGATCTTCGAAAGCGAA
CAGCCGGACCTGGTCATTTGCGATTTGCGCATGCCGCAGATCGACGGCCTCGAACTGATCCGCCGCATCCGC
CAGACCGCTTCGGAAACGCCGATCATCGTGCTTTCCGGAGCCGGCGTGATGAGCGATGCGGTGGAAGCCTTG
CGCCTGGGCGCCGCCGACTACCTGATCAAGCCCCTGGAAGATCTCGCGGTGCTCGAGCATTCGGTGCGCCGG
GCCCTGGATCGCGCCTACCTGCGGGTCGAGAACCAGCGCTACCGCGACAAGCTGGAAGCCGCCAACCGCGAA
TTGCAGGCCAGCCTGAACCTGCTCCAGGAGGACCAGAACGCTGGACGCCAGGTGCAGATGAACATGCTTCCG
GTGACGCCGTGGAGCATCGAGGGGCTGGAGTTTTCCCACCGGATCATTCCGTCGCTGTATCTCTCTGGCGAC
TTCGTCGACTACTTCCGGGTCGACGAGCGACGCGTGGCGTTCTACCTGGCCGACGTTTCCGGCCATGGCGCT
TCCTCGGCCTTCGTCACGGTGCTGCTGAAGTTCATGACCACGCGTCTGCTCTACGAGTCACGGCGCAACGGC
ACGCTCCCGGAGTTCAAGCCGTCCGAGGTGCTGGCGCACATCAACCGCGGCCTGATCAATACCAAGCTGGGC
AAGCACGTGACCATGCTCGGCGGGGTCATCGACCTGGAGAAGAACTGCCTGACCTACAGCATCGGCGGCCAC
CTGCCGCTCCCGGTACTGTTCGTCGACGGGCAGGCGAGCTACCTGGAAGGCCGTGGCCTGCCGGTGGGCCTG
TTCGACGATGCGAGCTATGACGACCGGGTCATGGAGTTGCCCCCTTCCTTCAGCCTGTCGCTGTTTTCCGAT
GGCATCCTCGATGTGCTGCCAGGAGCTACGCTGAAGGAGAAAGAGGCTTCGCTACCGGAGCAGGTGGCAGCC
GCCGGAGGCACCCTCGACGGGCTGCGCCAGGTCTTCGGGCTGGCCAACCTGGCGGAGATGCCGGATGATATC
GCCTTGCTGGTGTTGAGCAGGAACCTTGCATGA
Translation:
MHKVSATLLIIDDDEVVRESLAAYLEDSNFKVLQALNGLQGLQIFESEQPDLVICDLRMPQIDGLELIRRIR
QTASETPIIVLSGAGVMSDAVEALRLGAADYLIKPLEDLAVLEHSVRRALDRAYLRVENQRYRDKLEAANRE
LQASLNLLQEDQNAGRQVQMNMLPVTPWSIEGLEFSHRIIPSLYLSGDFVDYFRVDERRVAFYLADVSGHGA
SSAFVTVLLKFMTTRLLYESRRNGTLPEFKPSEVLAHINRGLINTKLGKHVTMLGGVIDLEKNCLTYSIGGH
LPLPVLFVDGQASYLEGRGLPVGLFDDASYDDRVMELPPSFSLSLFSDGILDVLPGATLKEKEASLPEQVAA
AGGTLDGLRQVFGLANLAEMPDDIALLVLSRNLA*
AnnotationID:1671GeneID:1662
AnnotatorUID: diggins
Modification Date/Time: 2005-04-06 04:04:12
Gene Name:
Confidence Code:3
GeneProduct:putative two-component response regulator
Cell Localization:()
Synonyms:PA2798
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(28) Two-component regulatory systems
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:cd00156
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO55634.1| (AE016863) response regulator [Pseudomonas syringae pv. tomato str.
           DC3000]
          Length = 394

 Score =  606 bits (1562), Expect = e-173
 Identities = 307/393 (78%), Positives = 348/393 (88%)

>gb|AAN67778.1|AE016409_4 (AE016782) response regulator [Pseudomonas putida KT2440]
          Length = 393

 Score =  603 bits (1556), Expect = e-172
 Identities = 310/393 (78%), Positives = 344/393 (87%), Gaps = 1/393 (0%)






 
Structural Features:
cd00156, REC, Signal receiver domain






   
Genomic Context:






   
Comment:


















    ReferenceID:3327




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20474




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36260




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1662_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1662
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2930
                           PA2798_tr
                           translation of PA2798
                           394
                           98.98
                           99.49
                           0
                           1951.0
     

     
     
91341
                           gb|AAG06186.1|AE004707_5
                           (AE004707) probable two-component response regulator [Pseudomonas aeruginosa PAO1]
                           394
                           98.98
                           99.49
                           0
                           1951.0
     

     
     
91343
                           gb|AAN67778.1|AE016409_4
                           (AE016782) response regulator [Pseudomonas putida KT2440]
                           394
                           78.68
                           87.30
                           1
                           1557.0
     

     
     
91342
                           gb|AAO55634.1|
                           (AE016863) response regulator [Pseudomonas syringae pv. tomato str. DC3000]
                           394
                           77.91
                           88.32
                           0
                           1561.0
     

     






      

          
GC ORFID: 44664How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2798Glimmer Score: 

          
Start: 2535925Stop: 2534741

          
Length: 1185


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2798 translation of PA2798Homolog Bit Score 756.0

          
Other Homologs:  t_PA2798 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCATAAAGTCAGTGCCACGCTGCTGATCATCGATGACGACGAGGTGGTGCGCGAAAGCCTCGCTGCCTAC 
TTGGAAGACAGCAACTTCAAGGTGTTGCAGGCCCTCAACGGTCTGCAGGGCCTGCAGATCTTCGAAAGCGAA 
CAGCCGGACCTGGTCATTTGCGATTTGCGCATGCCGCAGATCGACGGCCTCGAACTGATCCGCCGCATCCGC 
CAGACCGCTTCGGAAACGCCGATCATCGTGCTTTCCGGAGCCGGCGTGATGAGCGATGCGGTGGAAGCCTTG 
CGCCTGGGCGCCGCCGACTACCTGATCAAGCCCCTGGAAGATCTCGCGGTGCTCGAGCATTCGGTGCGCCGG 
GCCCTGGATCGCGCCTACCTGCGGGTCGAGAACCAGCGCTACCGCGACAAGCTGGAAGCCGCCAACCGCGAA 
TTGCAGGCCAGCCTGAACCTGCTCCAGGAGGACCAGAACGCTGGACGCCAGGTGCAGATGAACATGCTTCCG 
GTGACGCCGTGGAGCATCGAGGGGCTGGAGTTTTCCCACCGGATCATTCCGTCGCTGTATCTCTCTGGCGAC 
TTCGTCGACTACTTCCGGGTCGACGAGCGACGCGTGGCGTTCTACCTGGCCGACGTTTCCGGCCATGGCGCT 
TCCTCGGCCTTCGTCACGGTGCTGCTGAAGTTCATGACCACGCGTCTGCTCTACGAGTCACGGCGCAACGGC 
ACGCTCCCGGAGTTCAAGCCGTCCGAGGTGCTGGCGCACATCAACCGCGGCCTGATCAATACCAAGCTGGGC 
AAGCACGTGACCATGCTCGGCGGGGTCATCGACCTGGAGAAGAACTGCCTGACCTACAGCATCGGCGGCCAC 
CTGCCGCTCCCGGTACTGTTCGTCGACGGGCAGGCGAGCTACCTGGAAGGCCGTGGCCTGCCGGTGGGCCTG 
TTCGACGATGCGAGCTATGACGACCGGGTCATGGAGTTGCCCCCTTCCTTCAGCCTGTCGCTGTTTTCCGAT 
GGCATCCTCGATGTGCTGCCAGGAGCTACGCTGAAGGAGAAAGAGGCTTCGCTACCGGAGCAGGTGGCAGCC 
GCCGGAGGCACCCTCGACGGGCTGCGCCAGGTCTTCGGGCTGGCCAACCTGGCGGAGATGCCGGATGATATC 
GCCTTGCTGGTGTTGAGCAGGAACCTTGCATGA