ViewGene

Locus Name:
GeneID:
Location:

GeneID:1661
TrivialName: PA14_37760
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_37760
PAO1 Ortholog Locus:PA2068
Sequence Length:1164
Protein Length:387
Start: 3366606
Stop: 3367769
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05456.1|AE004633_7 (AE004633) probable MFS transporter [Pseudomonas aeruginosa PAO1]
Identities = 386/387 (99%), Positives = 386/387 (99%)
Sequence:
ATGTACCTGATCTTTTCCGGCTACTTCGCCGCCGAGGGGCTGATCTATCCCTTCTGGCCGACCTGGCTGGCC
AGCCTGGGCTTCGGCGCCAGCCAGATCGGCCTGTTGATCGCCGCGGCCTACTGGCCGCAGGTGATCGCCGGG
GTGGCGCTGACCTACGTGGCCGACTGGCGCATCGACCAGTTGCGCCTGGCGACCCTGCTGGCGGCCCTGGCC
GGCGCCTGCGCCCTGCTGTTCCAGCTGGCCGAGGGCCTGCCGCTGTTCATCGCCCTGAGCGTGCTCTACGGC
GCGTTCTGGACCAGCGTGCTGCCGCTCACCGAGTCCTACCTGCTCAAGCGCGACAAGGCCGCCCTGCAGAAC
TACGGGCGGGTACGCGCGGTCGGTTCGCTGGCCTTCATCCTCACCGCGACCCTGGGCGGCCTGCTGCTCGGT
CGGTTCGGCCAGCAACTGGTGCCCGCCCTGGTCGGCCTGACGATGCTGCTCACCGCGCTGGCCTGCCTGTTC
CTCCGTCGCCGCAGCCTGCGCCGTCCGGACTCGCCGCTGCCGGGCGCCAGGCGCCGTCCCGACCTGCGCGGG
ATCCTCCGGCAACGCCCCCTGCTGCTGGCCATCGCCGCGGCGGGAATGATCCAGCTGAGCCACTCGCTGTAC
TTCACCACCGCCTCGCTGGGCTGGCAGGCGCTGGGCTACTCGTCGTTCTCGGTCGGCGCCTTCTGGGGCCTG
GCGGTGATCGCCGAGATCAGCTTCTTCGCCGTCTCCAACCGCATCCTGGACCGCCACCCGGCGCTCCAGGTG
ATGCTCTTCTCCAGCCTTTGCGCGGCGCTGCGCTGGGGCCTGCTGGCCGGCAGCGAACATCTCGCCGCGATC
CTCCTCGGCCAGTGCCTGCACGCCCTCAGCTTCGCCGCCTACCACGCCGCGGTGATGCGCTACATCCGCGAC
CACGCGCCGGAAAGCGCGCGGGTACTGACCCAGGGAATCTACTACTCTCTGGCGGTAGCGCTGCCCATGGGC
CTCGCCAGTCCGGCCGCCGGCTGGCTGTACGAAGGCCTGCCGCAGTGGTCCTATCTGATCATGGCGCTGTTC
GCCCTCGGCGGCGCGGTCCTGGTCTGGCTTGCCCTACAGAGTGCCCGAGATGCATCGACTAGCGTTTTCAGC
CGTTCTGTTTGA
Translation:
MYLIFSGYFAAEGLIYPFWPTWLASLGFGASQIGLLIAAAYWPQVIAGVALTYVADWRIDQLRLATLLAALA
GACALLFQLAEGLPLFIALSVLYGAFWTSVLPLTESYLLKRDKAALQNYGRVRAVGSLAFILTATLGGLLLG
RFGQQLVPALVGLTMLLTALACLFLRRRSLRRPDSPLPGARRRPDLRGILRQRPLLLAIAAAGMIQLSHSLY
FTTASLGWQALGYSSFSVGAFWGLAVIAEISFFAVSNRILDRHPALQVMLFSSLCAALRWGLLAGSEHLAAI
LLGQCLHALSFAAYHAAVMRYIRDHAPESARVLTQGIYYSLAVALPMGLASPAAGWLYEGLPQWSYLIMALF
ALGGAVLVWLALQSARDASTSVFSRSV*
AnnotationID:1670GeneID:1661
AnnotatorUID: diggins
Modification Date/Time: 2005-03-03 06:06:10
Gene Name:
Confidence Code:3
GeneProduct:putative MFS transporter
Cell Localization:()
Synonyms:PA2068
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):membrane proteins
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
Genomic Context:
Comment:
ReferenceID:3325
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:20472
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:32633
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:1661_cdd.html
URL:
Homologs By Global Alignment
Gene ID:1661

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
2929 PA2068_tr translation of PA2068 387 99.74 99.74 0 1952.0
91340 gb|AAG05456.1|AE004633_7 (AE004633) probable MFS transporter [Pseudomonas aeruginosa PAO1] 387 99.74 99.74 0 1952.0
GC ORFID: 44663How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA2068Glimmer Score:
Start: 1587307Stop: 1586144
Length: 1164
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA2068 translation of PA2068Homolog Bit Score 756.0
Other Homologs: t_PA2068 (ORF: GLIMMER)
GC ORF Sequence
ATGTACCTGATCTTTTCCGGCTACTTCGCCGCCGAGGGGCTGATCTATCCCTTCTGGCCGACCTGGCTGGCC
AGCCTGGGCTTCGGCGCCAGCCAGATCGGCCTGTTGATCGCCGCGGCCTACTGGCCGCAGGTGATCGCCGGG
GTGGCGCTGACCTACGTGGCCGACTGGCGCATCGACCAGTTGCGCCTGGCGACCCTGCTGGCGGCCCTGGCC
GGCGCCTGCGCCCTGCTGTTCCAGCTGGCCGAGGGCCTGCCGCTGTTCATCGCCCTGAGCGTGCTCTACGGC
GCGTTCTGGACCAGCGTGCTGCCGCTCACCGAGTCCTACCTGCTCAAGCGCGACAAGGCCGCCCTGCAGAAC
TACGGGCGGGTACGCGCGGTCGGTTCGCTGGCCTTCATCCTCACCGCGACCCTGGGCGGCCTGCTGCTCGGT
CGGTTCGGCCAGCAACTGGTGCCCGCCCTGGTCGGCCTGACGATGCTGCTCACCGCGCTGGCCTGCCTGTTC
CTCCGTCGCCGCAGCCTGCGCCGTCCGGACTCGCCGCTGCCGGGCGCCAGGCGCCGTCCCGACCTGCGCGGG
ATCCTCCGGCAACGCCCCCTGCTGCTGGCCATCGCCGCGGCGGGAATGATCCAGCTGAGCCACTCGCTGTAC
TTCACCACCGCCTCGCTGGGCTGGCAGGCGCTGGGCTACTCGTCGTTCTCGGTCGGCGCCTTCTGGGGCCTG
GCGGTGATCGCCGAGATCAGCTTCTTCGCCGTCTCCAACCGCATCCTGGACCGCCACCCGGCGCTCCAGGTG
ATGCTCTTCTCCAGCCTTTGCGCGGCGCTGCGCTGGGGCCTGCTGGCCGGCAGCGAACATCTCGCCGCGATC
CTCCTCGGCCAGTGCCTGCACGCCCTCAGCTTCGCCGCCTACCACGCCGCGGTGATGCGCTACATCCGCGAC
CACGCGCCGGAAAGCGCGCGGGTACTGACCCAGGGAATCTACTACTCTCTGGCGGTAGCGCTGCCCATGGGC
CTCGCCAGTCCGGCCGCCGGCTGGCTGTACGAAGGCCTGCCGCAGTGGTCCTATCTGATCATGGCGCTGTTC
GCCCTCGGCGGCGCGGTCCTGGTCTGGCTTGCCCTACAGAGTGCCCGAGATGCATCGACTAGCGTTTTCAGC
CGTTCTGTTTGA