ViewGene
Locus Name:
GeneID:
Location:

GeneID:1660
TrivialName: PA14_11110
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_11110
PAO1 Ortholog Locus:PA4081
Sequence Length:1146
Protein Length:381
Start: 964995
Stop: 966140
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07468.1|AE004824_3 (AE004824) fimbrial subunit CupB6 [Pseudomonas aeruginosa PAO1]
Identities = 378/381 (99%), Positives = 380/381 (99%)
Sequence:
ATGAGCATGAGGTTATTTCCCGGCCGCGTTTCCCTGCGCCGCCGGCCTGGCGCGCAGGCTCGGCAGGCGCTC
GTTCTCGGCCTCTGCTGCCTGACCGGCGGCCAGGCCTGGGCCCTGAACGAGGTCGCCCTGAACTGCTCGTTC
GGCAATGGCAAAGGCTTGCCCTGGCGTGTGGTGAACGAGCTGACCAGCGGCACGGCGAAAGGCACGGTGCTG
TTCGCCAGGCCGGTGAGCCTGTTCCTGAGCTACAAGCCCCAGGCTTCCCAGGAGGCGCATGAGCTGGTCCTC
GGGGGGAACTGGTCCGGGGTGGGCTATCCGGGGCCCTACGGCACGGTAGCGTCCGACGTCAAAGGCATCGGC
TATCGGATCTCGGTGGATGCCCAGGACGGCGTCAAGCGGGTGATTCCGGTCGACAACCAGCCCCATGCGCTG
GACAAGCGAGTCACGAGCTTTTCCGGAAGCACGACCAGCGACTACCTACAGGAACTGGTCCTGACGGTCGAC
CCCGGCGAGTTGCCTGCCGGCGACCTGAAGGTAACCAGCGTATCCGGCAGCGCCACCCTGAATCTCTGGGCG
GTGGACAGGCTGAAGGGCGAAGCGTCCATCGGCAGCGTCCTGGCGGTGCCTGCGGACAACTACCCCACCGGG
GTTTGCCGAAAGCCCTATTCGCTGATCGGCCCGGCCTCCATCGCTATCGGCGGCGGTCCCCCGCCGCCGCCG
ATCCCGAAGAAATGCAAGGTCGAGGTGGGACGGGAAATCAACGTCAAACTGGGTAGCGTCGCGTTGAAGAAT
TTCCCGCGGGTCAACGACACCTCCACGGAGCGCTCCTTCGATATCTCTCTCAGCGAGTGTGCGGCGCTGGCC
AAGCCGGAAATCGCTTTCCGCGACAAGTATGTCTCGGCGCAGCAAGCGGACCCGACGATCCTCAGCTTGAAG
AGCGGCGGCGCGGCGGGGTTCGGCATCGTCGTGAAGAACGGCCTGGACCAGCAGCGGATACGTTTCGACGGC
ACGCCCTACCCGATGCGGCGTGTCGGCGACAGCGCCGACCTCCCGCTGAGTGCCGCCTACATCCGTATCGGC
GCGGAGGGCGAATTGAAGGCCGGGGTCGCCGACgGCGCCGCCGAGTTCACGTTTACCTTCCCCTGA
Translation:
MSMRLFPGRVSLRRRPGAQARQALVLGLCCLTGGQAWALNEVALNCSFGNGKGLPWRVVNELTSGTAKGTVL
FARPVSLFLSYKPQASQEAHELVLGGNWSGVGYPGPYGTVASDVKGIGYRISVDAQDGVKRVIPVDNQPHAL
DKRVTSFSGSTTSDYLQELVLTVDPGELPAGDLKVTSVSGSATLNLWAVDRLKGEASIGSVLAVPADNYPTG
VCRKPYSLIGPASIAIGGGPPPPPIPKKCKVEVGREINVKLGSVALKNFPRVNDTSTERSFDISLSECAALA
KPEIAFRDKYVSAQQADPTILSLKSGGAAGFGIVVKNGLDQQRIRFDGTPYPMRRVGDSADLPLSAAYIRIG
AEGELKAGVADGAAEFTFTFP*
AnnotationID:1669GeneID:1660
AnnotatorUID: diggins
Modification Date/Time: 2005-03-30 07:07:02
Gene Name:cupB6
Confidence Code:2
GeneProduct:fimbrial protein cupB6
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(16) Motility & Attachment
Alternate Gene Product Name:P pilus assembly protein
Functional Category Confidence Code:5
COGs:COG3539,pfam00419
Secondary Functional Category(ies):intracellular trafficking and secretion
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG3539, FimA, P pilus assembly protein, pilin FimA 
[Cell motility and secretion / Intracellular trafficking and secretion]
CD-Length = 184 residues,  80.4% aligned
Score = 67.9 bits (165), Expect = 2e-12

pfam00419, Fimbrial, Fimbrial protein.
CD-Length = 151 residues,  90.7% aligned
Score = 47.6 bits (113), Expect = 3e-06







   
Genomic Context:






   
Comment:


















    ReferenceID:3323




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20470




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36828




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1660_cdd.html


    		




 
URL:

















    ReferenceID:36935




  
Author/Investigator(s):
        Vallet I, Olson JW, Lory S, Lazdunski A, Filloux A.





  
Title:
        The chaperone/usher pathways of Pseudomonas aeruginosa: identification of fimbrial gene clusters (cup) and their involvement in biofilm formation.




  
PubMed:
        11381121


MedLine:
        




    
Source:
Proc Natl Acad Sci U S A. 2001 Jun 5;98(12):6911-6. Epub 2001 May 29.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=11381121









           
Homologs By Global Alignment 

           

       



     
Gene ID:1660
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2928
                           PA4081_tr
                           translation of PA4081
                           381
                           99.21
                           99.73
                           0
                           1955.0
     

     
     
91339
                           gb|AAG07468.1|AE004824_3
                           (AE004824) fimbrial subunit CupB6 [Pseudomonas aeruginosa PAO1]
                           381
                           99.21
                           99.73
                           0
                           1955.0
     

     






      

          
GC ORFID: 44662How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4081Glimmer Score: 

          
Start: 3988942Stop: 3987797

          
Length: 1146


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4081 translation of PA4081Homolog Bit Score 757.0

          
Other Homologs:  t_PA4081 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCATGAGGTTATTTCCCGGCCGCGTTTCCCTGCGCCGCCGGCCTGGCGCGCAGGCTCGGCAGGCGCTC 
GTTCTCGGCCTCTGCTGCCTGACCGGCGGCCAGGCCTGGGCCCTGAACGAGGTCGCCCTGAACTGCTCGTTC 
GGCAATGGCAAAGGCTTGCCCTGGCGTGTGGTGAACGAGCTGACCAGCGGCACGGCGAAAGGCACGGTGCTG 
TTCGCCAGGCCGGTGAGCCTGTTCCTGAGCTACAAGCCCCAGGCTTCCCAGGAGGCGCATGAGCTGGTCCTC 
GGGGGGAACTGGTCCGGGGTGGGCTATCCGGGGCCCTACGGCACGGTAGCGTCCGACGTCAAAGGCATCGGC 
TATCGGATCTCGGTGGATGCCCAGGACGGCGTCAAGCGGGTGATTCCGGTCGACAACCAGCCCCATGCGCTG 
GACAAGCGAGTCACGAGCTTTTCCGGAAGCACGACCAGCGACTACCTACAGGAACTGGTCCTGACGGTCGAC 
CCCGGCGAGTTGCCTGCCGGCGACCTGAAGGTAACCAGCGTATCCGGCAGCGCCACCCTGAATCTCTGGGCG 
GTGGACAGGCTGAAGGGCGAAGCGTCCATCGGCAGCGTCCTGGCGGTGCCTGCGGACAACTACCCCACCGGG 
GTTTGCCGAAAGCCCTATTCGCTGATCGGCCCGGCCTCCATCGCTATCGGCGGCGGTCCCCCGCCGCCGCCG 
ATCCCGAAGAAATGCAAGGTCGAGGTGGGACGGGAAATCAACGTCAAACTGGGTAGCGTCGCGTTGAAGAAT 
TTCCCGCGGGTCAACGACACCTCCACGGAGCGCTCCTTCGATATCTCTCTCAGCGAGTGTGCGGCGCTGGCC 
AAGCCGGAAATCGCTTTCCGCGACAAGTATGTCTCGGCGCAGCAAGCGGACCCGACGATCCTCAGCTTGAAG 
AGCGGCGGCGCGGCGGGGTTCGGCATCGTCGTGAAGAACGGCCTGGACCAGCAGCGGATACGTTTCGACGGC 
ACGCCCTACCCGATGCGGCGTGTCGGCGACAGCGCCGACCTCCCGCTGAGTGCCGCCTACATCCGTATCGGC 
GCGGAGGGCGAATTGAAGGCCGGGGTCGCCGACgGCGCCGCCGAGTTCACGTTTACCTTCCCCTGA